FFCP PHASE1:Hg19::chr1:233430709..233430711,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:233430709..233430711,+ | |||
|description=CAGE_peak_at_chr1:233430709..233430711,+ | |description=CAGE_peak_at_chr1:233430709..233430711,+ | ||
|id=chr1:233430709..233430711,+ | |id=chr1:233430709..233430711,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000037;9.37e-99;1!CL:0001024;9.37e-99;1!CL:1001319;2.55e-98;1!CL:1000600;2.55e-98;1!CL:0002092;2.73e-11;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0001024,9.37e-99,1;CL:1001319,2.55e-98,1;CL:1000600,2.55e-98,1;CL:0002092,2.73e-11,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!6.17e-15!239;DOID:162!1.57e-13!235;DOID:0050687!1.00e-11!143;DOID:305!1.87e-08!106;DOID:1909!1.24e-07!2;DOID:1749!1.63e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003343!1.18e-07!4;UBERON:0004785!1.18e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;2.55e-98;1!UBERON:0001256;2.55e-98;1!UBERON:0001259;2.55e-98;1!UBERON:0001255;4.52e-50;2!UBERON:0001556;4.52e-50;2!UBERON:0000365;5.15e-21;5!UBERON:0005910;9.07e-18;6!UBERON:0003350;1.07e-13;8!UBERON:0002371;1.22e-09;12!UBERON:0000486;1.33e-09;12!UBERON:0001474;7.18e-07;18!UBERON:0002075;7.60e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,2.55e-98,1;UBERON:0001256,2.55e-98,1;UBERON:0001259,2.55e-98,1;UBERON:0001255,4.52e-50,2;UBERON:0001556,4.52e-50,2;UBERON:0000365,5.15e-21,5;UBERON:0005910,9.07e-18,6;UBERON:0003350,1.07e-13,8;UBERON:0000162,2.00e-08,14;UBERON:0001353,2.00e-08,14;UBERON:0000163,2.00e-08,14;UBERON:0006866,2.00e-08,14;UBERON:0000164,2.00e-08,14;UBERON:0000931,2.00e-08,14;UBERON:0004122,5.93e-08,15;UBERON:0002075,7.60e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0.284338464974843,2.05520307534393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0.307240764308458,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0.173559738335131,0,0.435296032902013,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0.0801588202515337,0,0.39961921916426,0,0,0,0.14405479798815,0.49701014226173,0.235694034616795,0.271808412147228,0.209205692624666,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0.303298235083296,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0.157265941855896,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0.354996002191696,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0,0,1.13964576055364,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0.284338464974843,2.05520307534393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0.307240764308458,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0.173559738335131,0,0.435296032902013,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0.0801588202515337,0,0.39961921916426,0,0,0,0.14405479798815,0.49701014226173,0.235694034616795,0.271808412147228,0.209205692624666,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0.303298235083296,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0.157265941855896,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0.354996002191696,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0,0,1.13964576055364,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:233430709..233430711,+ | |short_description=p@chr1:233430709..233430711,+ | ||
}} | }} |
Latest revision as of 05:05, 28 July 2015
Short description: | p@chr1:233430709..233430711, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:233430709..233430711, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD34-positive, CD38-negative hematopoietic stem cell | 9.37e-99 | 1 |
bladder cell | 2.55e-98 | 1 |
lower urinary tract cell | 2.55e-98 | 1 |
bone marrow cell | 2.73e-11 | 10 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 2.55e-98 | 1 |
wall of urinary bladder | 2.55e-98 | 1 |
mucosa of urinary bladder | 2.55e-98 | 1 |
urinary bladder | 4.52e-50 | 2 |
lower urinary tract | 4.52e-50 | 2 |
urothelium | 5.15e-21 | 5 |
transitional epithelium | 9.07e-18 | 6 |
epithelium of mucosa | 1.07e-13 | 8 |
cloaca | 2.00e-08 | 14 |
anal region | 2.00e-08 | 14 |
embryonic cloaca | 2.00e-08 | 14 |
terminal part of digestive tract | 2.00e-08 | 14 |
primitive urogenital sinus | 2.00e-08 | 14 |
proctodeum | 2.00e-08 | 14 |
genitourinary system | 5.93e-08 | 15 |
viscus | 7.60e-07 | 18 |