FFCP PHASE1:Hg19::chr1:228275761..228275822,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=375 | |EntrezGene=375 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=652 | |HGNC=652 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000497165_5end | |association_with_transcript=0bp_to_ENST00000497165_5end | ||
|cluster_id=chr1:228275761..228275822,+ | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_10_at_ARF1_5end | |description=CAGE_peak_10_at_ARF1_5end | ||
|id=chr1:228275761..228275822,+ | |id=chr1:228275761..228275822,+ | ||
|ontology_enrichment_celltype=CL:0002057!6.24e-14!42;CL:0000860!4.17e-12!45;CL:0000766!2.83e-11!76;CL:0002139!5.54e-10!24;CL:0000359!6.61e-10!32;CL:0000839!1.51e-09!70;CL:0000763!2.09e-09!112;CL:0000049!2.09e-09!112;CL:0002194!1.71e-08!63;CL:0000576!1.71e-08!63;CL:0000040!1.71e-08!63;CL:0000559!1.71e-08!63;CL:0000557!3.42e-08!71;CL:0002009!7.57e-08!65;CL:0000048!8.31e-08!430;CL:0000034!1.25e-07!444;CL:0000071!1.67e-07!18;CL:0002546!1.67e-07!18;CL:0000723!1.69e-07!436 | |ontology_enrichment_celltype=CL:0002057!6.24e-14!42;CL:0000860!4.17e-12!45;CL:0000766!2.83e-11!76;CL:0002139!5.54e-10!24;CL:0000359!6.61e-10!32;CL:0000839!1.51e-09!70;CL:0000763!2.09e-09!112;CL:0000049!2.09e-09!112;CL:0002194!1.71e-08!63;CL:0000576!1.71e-08!63;CL:0000040!1.71e-08!63;CL:0000559!1.71e-08!63;CL:0000557!3.42e-08!71;CL:0002009!7.57e-08!65;CL:0000048!8.31e-08!430;CL:0000034!1.25e-07!444;CL:0000071!1.67e-07!18;CL:0002546!1.67e-07!18;CL:0000723!1.69e-07!436 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.58e-18;33!CL:0002057;9.58e-18;33!CL:0000473;8.61e-12;39!CL:0000234;8.61e-12;39!CL:1000413;1.12e-09;9!CL:0002544;3.48e-08;6!CL:0000094;1.27e-07;8!CL:0000359;1.81e-07;32!CL:0000576;1.98e-07;48!CL:0000766;5.53e-07;69!CL:0002139;7.31e-07;24!CL:0000071;9.68e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.91e-14,42;CL:0002057,1.91e-14,42;CL:0000766,1.89e-12,72;CL:0000473,6.67e-12,48;CL:0000234,6.67e-12,48;CL:0002194,1.95e-09,59;CL:0000576,1.95e-09,59;CL:0000040,1.95e-09,59;CL:0000559,1.95e-09,59;CL:1000413,2.21e-09,9;CL:0002009,6.00e-09,61;CL:0000763,1.08e-08,108;CL:0000049,1.08e-08,108;CL:0002544,5.03e-08,6;CL:0000839,7.28e-08,66;CL:0000094,8.90e-08,8;CL:0000359,1.00e-07,32;CL:0000557,1.14e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-10;42!CL:0002546;9.68e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!5.08e-21!216;UBERON:0004535!1.84e-19!110;UBERON:0001637!4.14e-19!42;UBERON:0003509!4.14e-19!42;UBERON:0004572!4.14e-19!42;UBERON:0001009!5.27e-19!113;UBERON:0000055!5.94e-18!69;UBERON:0001981!4.87e-15!60;UBERON:0007500!4.87e-15!60;UBERON:0004537!4.87e-15!60;UBERON:0006965!4.87e-15!60;UBERON:0004872!1.32e-14!84;UBERON:0004573!1.72e-14!33;UBERON:0004571!1.72e-14!33;UBERON:0002049!1.18e-13!79;UBERON:0007798!1.18e-13!79;UBERON:0002193!5.66e-13!112;UBERON:0002390!7.85e-11!102;UBERON:0003061!7.85e-11!102;UBERON:0000947!3.85e-09!21;UBERON:0010191!3.85e-09!21;UBERON:0000178!3.72e-08!15;UBERON:0000179!3.72e-08!15;UBERON:0000463!3.72e-08!15;UBERON:0001986!1.67e-07!18;UBERON:0004638!1.67e-07!18;UBERON:0004852!1.67e-07!18;UBERON:0002371!8.68e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.75e-18;15!UBERON:0000179;4.75e-18;15!UBERON:0000463;4.75e-18;15!UBERON:0001637;4.58e-13;42!UBERON:0003509;4.58e-13;42!UBERON:0004572;4.58e-13;42!UBERON:0004573;6.32e-12;33!UBERON:0004571;6.32e-12;33!UBERON:0002390;1.53e-11;32!UBERON:0003915;1.12e-09;9!UBERON:0004700;1.12e-09;9!UBERON:0001917;1.12e-09;9!UBERON:0007500;2.50e-09;56!UBERON:0001981;2.50e-09;56!UBERON:0004537;2.50e-09;56!UBERON:0002193;4.68e-09;42!UBERON:0000947;1.00e-08;21!UBERON:0010191;1.00e-08;21!UBERON:0004535;4.00e-07;109!UBERON:0004638;9.68e-07;18!UBERON:0001986;9.68e-07;18!UBERON:0004852;9.68e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.28e-26,203;UBERON:0004535,8.97e-21,109;UBERON:0001009,7.07e-20,112;UBERON:0000178,3.10e-18,15;UBERON:0000179,3.10e-18,15;UBERON:0000463,3.10e-18,15;UBERON:0002193,1.02e-16,108;UBERON:0001637,1.28e-16,42;UBERON:0003509,1.28e-16,42;UBERON:0004572,1.28e-16,42;UBERON:0002390,2.42e-16,98;UBERON:0003061,2.42e-16,98;UBERON:0000926,2.62e-15,315;UBERON:0004120,2.62e-15,315;UBERON:0006603,2.62e-15,315;UBERON:0004872,3.78e-14,83;UBERON:0004573,1.87e-13,33;UBERON:0004571,1.87e-13,33;UBERON:0000055,1.11e-12,68;UBERON:0007500,3.22e-12,59;UBERON:0001981,3.22e-12,59;UBERON:0004537,3.22e-12,59;UBERON:0006965,3.22e-12,59;UBERON:0002049,4.02e-10,78;UBERON:0007798,4.02e-10,78;UBERON:0003915,2.21e-09,9;UBERON:0004700,2.21e-09,9;UBERON:0001917,2.21e-09,9;UBERON:0000947,1.32e-08,21;UBERON:0010191,1.32e-08,21;UBERON:0002405,1.28e-07,93;UBERON:0002371,7.82e-07,76 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,2.01697543935533,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0.0821005894499457,0,3.14691421479123,1.91914699048606,1.39334510984468,0,0,0.369754010166788,0,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0,0,0,2.90796477559129,1.88937971844405,2.18325655069035,1.85943229524548,0.411167888021826,0.619412741790207,0,0.256160706529101,0.236482229888585,2.06847408441971,2.5819387343353,2.70852973188684,3.38836211176688,1.91034305040492,2.47195832889593,2.44867113896722,3.20929027076094,3.83602275479425,0,0.598390972864896,0,5.80418477257168,2.8369261234557,1.86846674698672,0.251248665256743,0,0.217188844705117,3.63239701580021,4.41933163185078,2.53169909952708,0.422510572623884,0,0,1.46027220490444,1.05123824989054,0.16072558669708,0.285012743741249,0,0.182664153764634,1.75996244461323,0,0,0.426730222566507,0,1.14950487990897,0,0,0,0.587237189370939,0.382273228125229,7.93027971474155,1.68152568894461,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,1.04535523804977,0,0,0.34362744548263,0,0,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0.821127996921047,0,0,0,0,0,0.255725123687061,0.722878304769133,1.00267582127178,0,0,0.486634870302636,0.0945348171640679,0,0,0.0654895377488563,0,0,0.649094787309367,0.522389211897802,0,0.238490624305342,0,0.371457501329565,5.56534740626774,0,2.08284300964557,3.39184765154406,0.838998872419812,2.20094433552054,1.04497483268405,1.03366703667732,0.35576626268671,0.33472061276467,1.20848795132744,0.760272105718513,1.70843440283719,1.10298924103761,4.0507097394088,0.0892997282840798,0.22452937262617,0.112611480483322,0,0.949265659568129,0.366403487860815,1.31780417436063,0,0,0,2.78587125662075,0.397227542439656,1.14734648299525,0.354668382198357,0,1.06748995729705,1.2333377420858,0,2.69421344139376,0,0,0,0.234321431833797,0.936480230490962,0,1.94283284717341,0.117434498643765,0,0,0,0.122834317311768,0.516628905878827,0,0.494533858557114,0.910161361938026,1.43723628363248,0,0,0.277064115484183,0,0,0.150238058906597,0.226864366320042,0,0,0.211931901159562,0,0.103052529238439,0.515281080091258,0,0.337552664482532,1.16924406193438,0.252433774244115,0.184099797284599,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24803506515239,0,0,0.325808305310325,0,0,0,0,1.01056513432752,0.925971025153221,0.761016608938393,0,0,0,0.936017060556951,0,0,0,0.141775097242386,0.268675568108545,0.581267877027924,0,0,0.880484340132261,0.207328115540772,0.720599767084807,0.12624243342638,0,0.763976851116555,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0.958499421966331,0,0,1.44781306667579,0,0.537182889719687,0,0,0,0.128343036279748,0,0,0,0,0,1.49801404789436,0,6.21623270154053,0,0,0.542530047399471,0,0,0,0,0.300946099727719,2.27407504055985,0,0.664225598535437,0,0,0,0,2.06768026122887,1.94142780736755,1.70764092485511,0,1.66435439510497,0,0.744323423456331,0.306923946576125,0,0.512556597022804,0.511707249066704,0.321707842287215,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0,0,3.59115856849996,0.114814448164607,0.182091168006717,0,0,0.0770153371044148,0,0,0,0,0.850468526382578,0.215915916102139,3.08454505380579,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0.976135183992909,0.309123034943167,0,0,0,0,0,0.676695028044854,0,0,0.137836572484531,0,0,0,0,0.991709492165869,0.960950336825531,0,1.71968227454435,6.507837690162,1.25924938732256,0.6970372701606,0.616067160352178,2.66153015158511,0,2.40921484835096,4.00749682877575,0,0,0,0,0.42793898803392,0.636406495851874,1.56989728039846,0,0,0,2.02182481573316,1.58510321173008,1.26377536871694,0,0.974853958525138,1.05650146756755,0,0,1.13008116620243,0,0.66343897524122,0.876901770507525,0.578775534266688,0,2.43492452355245,0.6196469961995,0.845086807596724,0,0,1.78335525740625,0,0,0,0,0,0.0962221127255121,0,0,0.564862804660675,0,0,0,0,58.3564750616995,38.2318603571188,29.0520065458823,17.6291513838764,16.865853196534,38.2599253603703,47.5227664769541,52.3462616354218,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,21.8023790205599,0,0.280797178113459,0.684704037099577,0,0,0.169291777801603,0.321176150207399,0.403599414382095,0,0,0,0,0,0,1.39203086947621,0,1.6227340708559,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0.111308705022906,0,0,0,0,0,0.20453736500431,0,0.622079175323615,0,1.25314822272926,1.02314474045374,0,23.948309234694,1.11136990144637,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0.341826167541004,0,0,0,0,0,0,0,0.156980256395025,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,4.6525771089503,2.64793564700399,4.70899377610838,3.58417289318877,0,1.52542140314453,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,4.24829966404928,0.19871461170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| ||
|short_description=p10@ARF1 | |short_description=p10@ARF1 | ||
}} | }} |
Latest revision as of 03:01, 16 September 2015
Short description: | p10@ARF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_ARF1_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000497165_5end |
EntrezGene: | ARF1 |
HGNC: | 652 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.91e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.91e-14 | 42 |
myeloid leukocyte | 1.89e-12 | 72 |
defensive cell | 6.67e-12 | 48 |
phagocyte | 6.67e-12 | 48 |
monopoietic cell | 1.95e-09 | 59 |
monocyte | 1.95e-09 | 59 |
monoblast | 1.95e-09 | 59 |
promonocyte | 1.95e-09 | 59 |
endothelial cell of artery | 2.21e-09 | 9 |
macrophage dendritic cell progenitor | 6.00e-09 | 61 |
myeloid cell | 1.08e-08 | 108 |
common myeloid progenitor | 1.08e-08 | 108 |
aortic endothelial cell | 5.03e-08 | 6 |
myeloid lineage restricted progenitor cell | 7.28e-08 | 66 |
granulocyte | 8.90e-08 | 8 |
vascular associated smooth muscle cell | 1.00e-07 | 32 |
granulocyte monocyte progenitor cell | 1.14e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.28e-26 | 203 |
cardiovascular system | 8.97e-21 | 109 |
circulatory system | 7.07e-20 | 112 |
blood | 3.10e-18 | 15 |
haemolymphatic fluid | 3.10e-18 | 15 |
organism substance | 3.10e-18 | 15 |
hemolymphoid system | 1.02e-16 | 108 |
artery | 1.28e-16 | 42 |
arterial blood vessel | 1.28e-16 | 42 |
arterial system | 1.28e-16 | 42 |
hematopoietic system | 2.42e-16 | 98 |
blood island | 2.42e-16 | 98 |
mesoderm | 2.62e-15 | 315 |
mesoderm-derived structure | 2.62e-15 | 315 |
presumptive mesoderm | 2.62e-15 | 315 |
splanchnic layer of lateral plate mesoderm | 3.78e-14 | 83 |
systemic artery | 1.87e-13 | 33 |
systemic arterial system | 1.87e-13 | 33 |
vessel | 1.11e-12 | 68 |
epithelial tube open at both ends | 3.22e-12 | 59 |
blood vessel | 3.22e-12 | 59 |
blood vasculature | 3.22e-12 | 59 |
vascular cord | 3.22e-12 | 59 |
vasculature | 4.02e-10 | 78 |
vascular system | 4.02e-10 | 78 |
endothelial tube | 2.21e-09 | 9 |
arterial system endothelium | 2.21e-09 | 9 |
endothelium of artery | 2.21e-09 | 9 |
aorta | 1.32e-08 | 21 |
aortic system | 1.32e-08 | 21 |
immune system | 1.28e-07 | 93 |
bone marrow | 7.82e-07 | 76 |