FFCP PHASE1:Hg19::chr1:19337630..19337635,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:19337630..19337635,- | |||
|description=CAGE_peak_at_chr1:19337630..19337635,- | |description=CAGE_peak_at_chr1:19337630..19337635,- | ||
|id=chr1:19337630..19337635,- | |id=chr1:19337630..19337635,- | ||
|ontology_enrichment_celltype=CL:0000066!2.11e-12!254;CL:0000223!2.50e-09!59;CL:1000497!3.73e-09!18;CL:0002518!3.73e-09!18;CL:1000449!5.80e-09!16;CL:0002076!6.46e-09!43;CL:0002681!1.67e-07!13;CL:0002584!1.67e-07!13;CL:0002251!1.89e-07!21 | |ontology_enrichment_celltype=CL:0000066!2.11e-12!254;CL:0000223!2.50e-09!59;CL:1000497!3.73e-09!18;CL:0002518!3.73e-09!18;CL:1000449!5.80e-09!16;CL:0002076!6.46e-09!43;CL:0002681!1.67e-07!13;CL:0002584!1.67e-07!13;CL:0002251!1.89e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.01e-13;15!CL:0002541;1.76e-12;3!CL:1000497;4.31e-12;17!CL:0002518;4.31e-12;17!CL:1000746;3.47e-11;7!CL:1000612;3.47e-11;7!CL:0002681;3.53e-11;12!CL:0002584;3.53e-11;12!CL:1000507;4.88e-08;10!CL:1000494;4.88e-08;10!CL:0002537;8.68e-08;5!CL:0002188;1.43e-07;5!CL:0000349;2.01e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,1.11e-13,15;CL:0002541,2.03e-12,3;CL:1000497,4.68e-12,17;CL:0002518,4.68e-12,17;CL:1000746,3.42e-11,7;CL:1000612,3.42e-11,7;CL:0002681,3.78e-11,12;CL:0002584,3.78e-11,12;CL:1000507,5.25e-08,10;CL:1000494,5.25e-08,10;CL:0002537,8.25e-08,5;CL:0002188,1.46e-07,5;CL:0000349,2.04e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.40e-17;2!UBERON:0010056;1.40e-17;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4362;8.11e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,7.71e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000153!1.96e-10!129;UBERON:0007811!1.96e-10!129;UBERON:0000033!1.48e-09!123;UBERON:0004211!5.80e-09!16;UBERON:0001285!5.80e-09!16;UBERON:0007684!5.80e-09!16;UBERON:0003220!5.80e-09!16;UBERON:0004208!5.80e-09!16;UBERON:0000064!1.27e-08!219;UBERON:0006555!2.96e-08!17;UBERON:0005103!2.96e-08!17;UBERON:0000083!2.96e-08!17;UBERON:0009201!2.96e-08!17;UBERON:0004819!2.96e-08!17;UBERON:0006553!2.96e-08!17;UBERON:0003074!2.96e-08!17;UBERON:0003060!2.96e-08!17;UBERON:0004121!7.15e-08!169;UBERON:0000080!1.25e-07!18;UBERON:0002120!1.25e-07!18;UBERON:0004875!1.25e-07!18;UBERON:0005721!1.25e-07!18;UBERON:0005754!1.25e-07!18;UBERON:0007297!1.25e-07!18;UBERON:0001225!1.67e-07!13;UBERON:0008987!1.67e-07!13;UBERON:0000058!1.99e-07!26;UBERON:0000924!2.16e-07!173;UBERON:0006601!2.16e-07!173;UBERON:0000489!5.39e-07!32;UBERON:0000475!6.73e-07!365;UBERON:0002113!8.67e-07!27;UBERON:0003918!8.67e-07!27;UBERON:0005095!8.67e-07!27;UBERON:0007687!8.67e-07!27;UBERON:0004111!9.89e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.57e-14;10!UBERON:0000158;5.57e-14;10!UBERON:0006555;1.01e-13;15!UBERON:0004819;1.01e-13;15!UBERON:0001285;1.01e-13;15!UBERON:0007684;1.01e-13;15!UBERON:0003124;1.76e-12;3!UBERON:0000920;1.76e-12;3!UBERON:0001723;4.85e-12;3!UBERON:0001033;4.85e-12;3!UBERON:0000074;3.47e-11;7!UBERON:0001229;3.47e-11;7!UBERON:0001225;3.53e-11;12!UBERON:0008987;3.53e-11;12!UBERON:0000489;7.99e-10;29!UBERON:0001851;5.62e-09;15!UBERON:0000353;5.62e-09;15!UBERON:0002113;1.61e-08;24!UBERON:0011143;1.61e-08;24!UBERON:0004211;4.88e-08;10!UBERON:0009773;4.88e-08;10!UBERON:0001231;4.88e-08;10!UBERON:0004810;4.88e-08;10!UBERON:0006554;8.91e-07;30!UBERON:0001008;8.91e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.11e-13,15;UBERON:0009773,1.11e-13,15;UBERON:0001231,1.11e-13,15;UBERON:0001285,1.11e-13,15;UBERON:0007684,1.11e-13,15;UBERON:0004208,1.11e-13,15;UBERON:0006555,8.11e-13,16;UBERON:0004819,8.11e-13,16;UBERON:0000920,2.03e-12,3;UBERON:0001723,3.57e-12,3;UBERON:0001033,3.57e-12,3;UBERON:0010056,3.57e-12,3;UBERON:0010532,3.42e-11,7;UBERON:0000074,3.42e-11,7;UBERON:0001229,3.42e-11,7;UBERON:0001230,3.42e-11,7;UBERON:0003220,3.42e-11,7;UBERON:0005749,3.42e-11,7;UBERON:0004199,3.42e-11,7;UBERON:0004209,3.42e-11,7;UBERON:0004198,3.42e-11,7;UBERON:0001225,3.78e-11,12;UBERON:0008987,3.78e-11,12;UBERON:0005631,5.05e-10,14;UBERON:0000158,5.05e-10,14;UBERON:0005103,7.37e-10,8;UBERON:0000083,7.37e-10,8;UBERON:0009201,7.37e-10,8;UBERON:0006553,7.37e-10,8;UBERON:0003074,7.37e-10,8;UBERON:0003060,7.37e-10,8;UBERON:0000489,3.66e-09,31;UBERON:0001851,5.93e-09,15;UBERON:0000353,5.93e-09,15;UBERON:0000080,8.08e-09,9;UBERON:0002120,8.08e-09,9;UBERON:0004875,8.08e-09,9;UBERON:0005721,8.08e-09,9;UBERON:0005754,8.08e-09,9;UBERON:0007297,8.08e-09,9;UBERON:0003103,1.39e-08,68;UBERON:0004810,5.25e-08,10;UBERON:0002113,7.95e-08,26;UBERON:0003918,7.95e-08,26;UBERON:0011143,7.95e-08,26;UBERON:0005095,7.95e-08,26;UBERON:0007687,7.95e-08,26;UBERON:0004876,2.66e-07,11;UBERON:0000058,4.39e-07,19;UBERON:0003887,9.91e-07,12 | |||
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|short_description=p@chr1:19337630..19337635,- | |short_description=p@chr1:19337630..19337635,- | ||
}} | }} |
Latest revision as of 01:44, 28 July 2015
Short description: | p@chr1:19337630..19337635, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:19337630..19337635, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 1.11e-13 | 15 |
chorionic membrane mesenchymal stem cell | 2.03e-12 | 3 |
kidney cell | 4.68e-12 | 17 |
kidney epithelial cell | 4.68e-12 | 17 |
glomerular cell | 3.42e-11 | 7 |
kidney corpuscule cell | 3.42e-11 | 7 |
kidney cortical cell | 3.78e-11 | 12 |
renal cortical epithelial cell | 3.78e-11 | 12 |
kidney tubule cell | 5.25e-08 | 10 |
nephron tubule epithelial cell | 5.25e-08 | 10 |
amnion mesenchymal stem cell | 8.25e-08 | 5 |
glomerular endothelial cell | 1.46e-07 | 5 |
extraembryonic cell | 2.04e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 7.71e-08 | 5 |