FFCP PHASE1:Hg19::chr15:59908870..59908880,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9245 | |EntrezGene=9245 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4205 | |HGNC=4205 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=140bp_to_ENST00000560210_5end | |association_with_transcript=140bp_to_ENST00000560210_5end | ||
|cluster_id=chr15:59908870..59908880,+ | |||
|coexpression_cluster_id=C3501 | |||
|description=CAGE_peak_21_at_GCNT3_5end | |description=CAGE_peak_21_at_GCNT3_5end | ||
|id=chr15:59908870..59908880,+ | |id=chr15:59908870..59908880,+ | ||
|ontology_enrichment_celltype=CL:0000167!1.36e-07!1;CL:0000164!1.36e-07!1;CL:0000502!1.36e-07!1;CL:0000172!1.36e-07!1;CL:0000173!1.36e-07!1;CL:0002351!1.36e-07!1 | |ontology_enrichment_celltype=CL:0000167!1.36e-07!1;CL:0000164!1.36e-07!1;CL:0000502!1.36e-07!1;CL:0000172!1.36e-07!1;CL:0000173!1.36e-07!1;CL:0002351!1.36e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000167;3.67e-23;1!CL:0000164;3.67e-23;1!CL:0000502;3.67e-23;1!CL:0000172;3.67e-23;1!CL:0000173;3.67e-23;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,3.28e-23,1;CL:0000164,3.28e-23,1;CL:0000502,3.28e-23,1;CL:0000172,3.28e-23,1;CL:0000173,3.28e-23,1;CL:0002351,3.28e-23,1 | |||
|ontology_enrichment_development_v019=CL:0002351;3.67e-23;1!UBERON:0008801;3.67e-23;1 | |||
|ontology_enrichment_disease=DOID:4430!1.36e-07!1 | |ontology_enrichment_disease=DOID:4430!1.36e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:4430;3.67e-23;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,3.28e-23,1 | |||
|ontology_enrichment_uberon=UBERON:0003127!1.77e-13!2;UBERON:0001829!3.46e-13!2;UBERON:0000078!1.11e-11!18;UBERON:0000166!6.25e-10!21;UBERON:0000161!9.02e-10!35;UBERON:0001044!1.22e-09!6;UBERON:0003293!1.22e-09!6;UBERON:0003294!1.22e-09!6;UBERON:0010047!1.22e-09!6;UBERON:0000167!1.22e-09!6;UBERON:0001723!4.60e-09!3;UBERON:0001033!4.60e-09!3;UBERON:0010056!4.60e-09!3;UBERON:0000077!2.59e-08!130;UBERON:0003126!2.71e-08!7;UBERON:0001005!2.71e-08!7;UBERON:0001004!5.30e-08!72;UBERON:0001041!1.01e-07!98;UBERON:0002372!1.06e-07!1;UBERON:0001961!1.06e-07!1;UBERON:0001744!1.06e-07!1;UBERON:0001735!1.06e-07!1;UBERON:0001831!1.63e-07!1;UBERON:0001567!1.63e-07!1;UBERON:0008801!1.63e-07!1;UBERON:0007029!2.23e-07!1;UBERON:0001736!2.37e-07!1;UBERON:0006298!2.37e-07!1;UBERON:0000165!2.67e-07!28;UBERON:0000930!2.67e-07!28;UBERON:0007023!3.20e-07!115;UBERON:0004921!3.40e-07!129;UBERON:0004185!3.40e-07!129;UBERON:0003103!9.16e-07!69 | |ontology_enrichment_uberon=UBERON:0003127!1.77e-13!2;UBERON:0001829!3.46e-13!2;UBERON:0000078!1.11e-11!18;UBERON:0000166!6.25e-10!21;UBERON:0000161!9.02e-10!35;UBERON:0001044!1.22e-09!6;UBERON:0003293!1.22e-09!6;UBERON:0003294!1.22e-09!6;UBERON:0010047!1.22e-09!6;UBERON:0000167!1.22e-09!6;UBERON:0001723!4.60e-09!3;UBERON:0001033!4.60e-09!3;UBERON:0010056!4.60e-09!3;UBERON:0000077!2.59e-08!130;UBERON:0003126!2.71e-08!7;UBERON:0001005!2.71e-08!7;UBERON:0001004!5.30e-08!72;UBERON:0001041!1.01e-07!98;UBERON:0002372!1.06e-07!1;UBERON:0001961!1.06e-07!1;UBERON:0001744!1.06e-07!1;UBERON:0001735!1.06e-07!1;UBERON:0001831!1.63e-07!1;UBERON:0001567!1.63e-07!1;UBERON:0008801!1.63e-07!1;UBERON:0007029!2.23e-07!1;UBERON:0001736!2.37e-07!1;UBERON:0006298!2.37e-07!1;UBERON:0000165!2.67e-07!28;UBERON:0000930!2.67e-07!28;UBERON:0007023!3.20e-07!115;UBERON:0004921!3.40e-07!129;UBERON:0004185!3.40e-07!129;UBERON:0003103!9.16e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0003127;1.91e-44;2!UBERON:0002372;1.33e-23;1!UBERON:0001961;1.33e-23;1!UBERON:0001744;1.33e-23;1!UBERON:0001042;1.33e-23;1!UBERON:0001735;1.33e-23;1!UBERON:0001831;3.67e-23;1!UBERON:0001567;3.67e-23;1!UBERON:0003126;1.69e-13;7!UBERON:0001005;1.69e-13;7!UBERON:0000341;1.65e-12;2!UBERON:0006562;1.65e-12;2!UBERON:0001829;2.74e-12;2!UBERON:0004089;2.74e-12;2!UBERON:0001723;1.26e-08;3!UBERON:0001033;1.26e-08;3!UBERON:0000165;9.65e-08;28!UBERON:0007196;8.58e-07;15!UBERON:0001558;8.58e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,1.91e-44,2;UBERON:0002372,1.34e-23,1;UBERON:0001961,1.34e-23,1;UBERON:0001744,1.34e-23,1;UBERON:0001735,1.34e-23,1;UBERON:0001831,6.40e-23,1;UBERON:0001567,6.40e-23,1;UBERON:0008801,6.40e-23,1;UBERON:0003126,1.69e-13,7;UBERON:0001005,1.69e-13,7;UBERON:0000341,1.48e-12,2;UBERON:0001829,3.62e-12,2;UBERON:0004089,3.62e-12,2;UBERON:0001042,7.08e-10,10;UBERON:0009145,7.08e-10,10;UBERON:0000166,1.09e-09,22;UBERON:0006562,4.61e-09,11;UBERON:0001723,1.04e-08,3;UBERON:0001033,1.04e-08,3;UBERON:0010056,1.04e-08,3;UBERON:0000072,6.63e-08,47;UBERON:0001004,1.35e-07,74;UBERON:0000165,1.71e-07,29;UBERON:0000930,1.71e-07,29;UBERON:0000065,6.41e-07,54;UBERON:0007196,8.58e-07,15;UBERON:0001558,8.58e-07,15 | |||
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|short_description=p21@GCNT3 | |short_description=p21@GCNT3 | ||
}} | }} |
Latest revision as of 09:12, 18 September 2015
Short description: | p21@GCNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_GCNT3_5end |
Coexpression cluster: | C3501_somatostatinoma_tonsil_throat_trachea_endometrioid_salivary_smallcell |
Association with transcript: | 140bp_to_ENST00000560210_5end |
EntrezGene: | GCNT3 |
HGNC: | 4205 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 3.28e-23 | 1 |
enteroendocrine cell | 3.28e-23 | 1 |
type D enteroendocrine cell | 3.28e-23 | 1 |
somatostatin secreting cell | 3.28e-23 | 1 |
pancreatic D cell | 3.28e-23 | 1 |
progenitor cell of endocrine pancreas | 3.28e-23 | 1 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 1.91e-44 | 2 |
tonsil | 1.34e-23 | 1 |
mucosa-associated lymphoid tissue | 1.34e-23 | 1 |
lymphoid tissue | 1.34e-23 | 1 |
tonsillar ring | 1.34e-23 | 1 |
parotid gland | 6.40e-23 | 1 |
cheek | 6.40e-23 | 1 |
parotid gland primordium | 6.40e-23 | 1 |
trachea | 1.69e-13 | 7 |
respiratory airway | 1.69e-13 | 7 |
throat | 1.48e-12 | 2 |
major salivary gland | 3.62e-12 | 2 |
midface | 3.62e-12 | 2 |
chordate pharynx | 7.08e-10 | 10 |
pharyngeal region of foregut | 7.08e-10 | 10 |
oral opening | 1.09e-09 | 22 |
pharynx | 4.61e-09 | 11 |
tongue | 1.04e-08 | 3 |
gustatory system | 1.04e-08 | 3 |
future tongue | 1.04e-08 | 3 |
segment of respiratory tract | 6.63e-08 | 47 |
respiratory system | 1.35e-07 | 74 |
mouth | 1.71e-07 | 29 |
stomodeum | 1.71e-07 | 29 |
respiratory tract | 6.41e-07 | 54 |
tracheobronchial tree | 8.58e-07 | 15 |
lower respiratory tract | 8.58e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 3.28e-23 | 1 |