FFCP PHASE1:Hg19::chr1:186275480..186275498,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:186275480..186275498,+ | |||
|coexpression_cluster_id=C536 | |||
|description=CAGE_peak_at_chr1:186275480..186275498,+ | |description=CAGE_peak_at_chr1:186275480..186275498,+ | ||
|id=chr1:186275480..186275498,+ | |id=chr1:186275480..186275498,+ | ||
|ontology_enrichment_celltype=CL:0000153!5.71e-17!9;CL:0000447!5.71e-17!9;CL:0000135!9.82e-13!3;CL:0000386!9.82e-13!3;CL:0000388!9.82e-13!3;CL:0000667!6.08e-12!6;CL:0000058!6.08e-12!6;CL:0000138!6.08e-12!6;CL:0000499!4.03e-11!27;CL:0000327!1.18e-10!14;CL:0002549!4.15e-09!2 | |ontology_enrichment_celltype=CL:0000153!5.71e-17!9;CL:0000447!5.71e-17!9;CL:0000135!9.82e-13!3;CL:0000386!9.82e-13!3;CL:0000388!9.82e-13!3;CL:0000667!6.08e-12!6;CL:0000058!6.08e-12!6;CL:0000138!6.08e-12!6;CL:0000499!4.03e-11!27;CL:0000327!1.18e-10!14;CL:0002549!4.15e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:0000153;1.40e-27;9!CL:0000447;1.40e-27;9!CL:0000138;8.45e-24;6!CL:0000327;1.03e-16;15!CL:0000182;4.03e-12;12!CL:0000499;4.29e-09;28!CL:0002549;6.93e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.07e-27,9;CL:0000447,1.07e-27,9;CL:0000058,7.83e-24,6;CL:0000138,7.83e-24,6;CL:0000327,8.75e-17,15;CL:0000182,4.03e-12,12;CL:0000499,3.94e-09,28;CL:0002549,7.49e-09,2;CL:0000151,3.75e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000043!9.82e-13!3;UBERON:0003947!4.15e-09!2;UBERON:0005629!4.15e-09!2;UBERON:0005358!4.15e-09!2;UBERON:0001886!4.15e-09!2;UBERON:0004086!4.15e-09!2;UBERON:0005282!4.15e-09!2;UBERON:0005281!4.15e-09!2;UBERON:0007023!4.44e-08!115;UBERON:0005284!7.91e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.06e-13;19!UBERON:0006925;3.06e-13;19!UBERON:0002423;3.92e-10;25!UBERON:0002368;5.89e-10;33!UBERON:0000007;6.93e-09;2!UBERON:0005629;6.93e-09;2!UBERON:0005358;6.93e-09;2!UBERON:0001886;6.93e-09;2!UBERON:0004086;6.93e-09;2!UBERON:0005282;6.93e-09;2!UBERON:0005281;6.93e-09;2!UBERON:0002365;1.74e-08;31!UBERON:0002330;1.74e-08;31!UBERON:0000949;1.56e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.07e-13,19;UBERON:0006925,3.07e-13,19;UBERON:0008836,3.07e-13,19;UBERON:0008835,1.78e-11,22;UBERON:0003894,1.78e-11,22;UBERON:0009854,5.45e-11,23;UBERON:0002368,5.62e-11,35;UBERON:0007499,3.92e-10,25;UBERON:0009497,3.92e-10,25;UBERON:0000015,3.92e-10,25;UBERON:0002423,3.92e-10,25;UBERON:0006235,3.92e-10,25;UBERON:0004161,3.92e-10,25;UBERON:0009856,9.39e-10,26;UBERON:0000007,5.94e-09,2;UBERON:0005629,7.49e-09,2;UBERON:0005358,7.49e-09,2;UBERON:0001886,7.49e-09,2;UBERON:0004086,7.49e-09,2;UBERON:0005282,7.49e-09,2;UBERON:0005281,7.49e-09,2;UBERON:0000949,1.56e-08,45;UBERON:0002365,3.20e-08,31;UBERON:0002330,3.20e-08,31 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,5.05375898741465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,1.30361867064741,77.1427368639566,6.8128881842369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,1.15235184896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,4.91413608338813,2.95394953340702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.844430541190656,1.97576935775941,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0.858452096273142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0.544017803369474,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895528817321244,0,0,0,0,0,0.228840068396924,0,0.932623203496683,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,1.82089681270989,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.426467963801962,0,0,0,0,0,0,0,0,0,0.286888821570705,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,5.05375898741465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,1.30361867064741,77.1427368639566,6.8128881842369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,1.15235184896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,4.91413608338813,2.95394953340702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.844430541190656,1.97576935775941,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0.858452096273142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0.544017803369474,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895528817321244,0,0,0,0,0,0.228840068396924,0,0.932623203496683,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,1.82089681270989,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.426467963801962,0,0,0,0,0,0,0,0,0,0.286888821570705,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr1:186275480..186275498,+ | |short_description=p@chr1:186275480..186275498,+ | ||
}} | }} |
Latest revision as of 01:29, 28 July 2015
Short description: | p@chr1:186275480..186275498, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:186275480..186275498, + |
Coexpression cluster: | C536_Chondrocyte_Mallassezderived_liver_mesothelioma_Adipocyte_serous_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.07e-27 | 9 |
carbohydrate secreting cell | 1.07e-27 | 9 |
chondroblast | 7.83e-24 | 6 |
chondrocyte | 7.83e-24 | 6 |
extracellular matrix secreting cell | 8.75e-17 | 15 |
hepatocyte | 4.03e-12 | 12 |
stromal cell | 3.94e-09 | 28 |
fibroblast of choroid plexus | 7.49e-09 | 2 |
secretory cell | 3.75e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
liver | 3.07e-13 | 19 |
digestive gland | 3.07e-13 | 19 |
liver bud | 3.07e-13 | 19 |
hepatic diverticulum | 1.78e-11 | 22 |
liver primordium | 1.78e-11 | 22 |
digestive tract diverticulum | 5.45e-11 | 23 |
endocrine gland | 5.62e-11 | 35 |
epithelial sac | 3.92e-10 | 25 |
epithelium of foregut-midgut junction | 3.92e-10 | 25 |
anatomical boundary | 3.92e-10 | 25 |
hepatobiliary system | 3.92e-10 | 25 |
foregut-midgut junction | 3.92e-10 | 25 |
septum transversum | 3.92e-10 | 25 |
sac | 9.39e-10 | 26 |
pituitary gland | 5.94e-09 | 2 |
vascular plexus | 7.49e-09 | 2 |
ventricle of nervous system | 7.49e-09 | 2 |
choroid plexus | 7.49e-09 | 2 |
brain ventricle | 7.49e-09 | 2 |
ventricular system of brain | 7.49e-09 | 2 |
ventricular system of central nervous system | 7.49e-09 | 2 |
endocrine system | 1.56e-08 | 45 |
exocrine gland | 3.20e-08 | 31 |
exocrine system | 3.20e-08 | 31 |