FFCP PHASE1:Hg19::chr1:158979872..158979898,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3428 | |EntrezGene=3428 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5395 | |HGNC=5395 | ||
|TSSclassifier=strong | |||
|UniProt=E7EPR3 | |UniProt=E7EPR3 | ||
|association_with_transcript=72bp_to_ENST00000430894_5end | |association_with_transcript=72bp_to_ENST00000430894_5end | ||
|cluster_id=chr1:158979872..158979898,+ | |||
|coexpression_cluster_id=C3886 | |||
|description=CAGE_peak_3_at_IFI16_5end | |description=CAGE_peak_3_at_IFI16_5end | ||
|id=chr1:158979872..158979898,+ | |id=chr1:158979872..158979898,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.35e-21!42;CL:0000860!8.26e-20!45;CL:0002194!2.03e-18!63;CL:0000576!2.03e-18!63;CL:0000040!2.03e-18!63;CL:0000559!2.03e-18!63;CL:0000766!2.39e-18!76;CL:0002009!4.56e-17!65;CL:0000557!8.72e-16!71;CL:0000839!1.14e-15!70;CL:0000048!1.91e-08!430;CL:0000723!2.30e-08!436;CL:0000034!3.87e-07!444;CL:0000055!4.51e-07!180 | |ontology_enrichment_celltype=CL:0002057!1.35e-21!42;CL:0000860!8.26e-20!45;CL:0002194!2.03e-18!63;CL:0000576!2.03e-18!63;CL:0000040!2.03e-18!63;CL:0000559!2.03e-18!63;CL:0000766!2.39e-18!76;CL:0002009!4.56e-17!65;CL:0000557!8.72e-16!71;CL:0000839!1.14e-15!70;CL:0000048!1.91e-08!430;CL:0000723!2.30e-08!436;CL:0000034!3.87e-07!444;CL:0000055!4.51e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.48e-19;33!CL:0002057;4.48e-19;33!CL:0000473;6.09e-17;39!CL:0000234;6.09e-17;39!CL:0000576;5.73e-14;48!CL:0000766;2.65e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.25e-24,48;CL:0000234,8.25e-24,48;CL:0000860,8.25e-23,42;CL:0002057,8.25e-23,42;CL:0002194,1.85e-21,59;CL:0000576,1.85e-21,59;CL:0000040,1.85e-21,59;CL:0000559,1.85e-21,59;CL:0000766,6.42e-21,72;CL:0002009,9.64e-20,61;CL:0000839,1.74e-18,66;CL:0000557,3.75e-18,67;CL:0000723,8.89e-10,433;CL:0000048,9.72e-10,427;CL:0000034,1.39e-08,441;CL:0000763,3.00e-07,108;CL:0000049,3.00e-07,108;CL:0000057,5.08e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;1.44e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!4.12e-21!167;UBERON:0002390!2.36e-18!102;UBERON:0003061!2.36e-18!102;UBERON:0002193!1.23e-16!112;UBERON:0002371!1.34e-16!80;UBERON:0004765!3.17e-16!101;UBERON:0001434!3.17e-16!101;UBERON:0001474!3.55e-15!86;UBERON:0003081!1.69e-11!216;UBERON:0002405!1.11e-09!115;UBERON:0000467!6.89e-09!625;UBERON:0000926!7.37e-09!448;UBERON:0004120!7.37e-09!448;UBERON:0006603!7.37e-09!448;UBERON:0000480!1.20e-08!626;UBERON:0000468!3.15e-08!659;UBERON:0000923!7.01e-07!604;UBERON:0005291!7.01e-07!604;UBERON:0006598!7.01e-07!604;UBERON:0002532!7.01e-07!604;UBERON:0002050!7.10e-07!605;UBERON:0005423!7.10e-07!605 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,5.26e-23,167;UBERON:0002390,1.09e-19,98;UBERON:0003061,1.09e-19,98;UBERON:0004765,1.72e-19,90;UBERON:0001434,8.35e-19,100;UBERON:0002371,1.75e-18,76;UBERON:0002193,6.01e-18,108;UBERON:0000926,7.08e-18,315;UBERON:0004120,7.08e-18,315;UBERON:0006603,7.08e-18,315;UBERON:0001474,4.37e-17,82;UBERON:0002405,5.04e-15,93;UBERON:0003081,2.46e-14,203;UBERON:0002050,1.25e-08,564;UBERON:0000923,5.54e-08,560;UBERON:0010316,5.54e-08,560;UBERON:0005291,5.54e-08,560;UBERON:0006598,5.54e-08,560;UBERON:0010317,5.54e-08,560;UBERON:0002532,5.54e-08,560 | |||
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| ||
|short_description=p3@IFI16 | |short_description=p3@IFI16 | ||
}} | }} |
Latest revision as of 21:58, 17 September 2015
Short description: | p3@IFI16 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_IFI16_5end |
Coexpression cluster: | C3886_CD14_malignant_oral_Keratinocyte_Mallassezderived_Smooth_Small |
Association with transcript: | 72bp_to_ENST00000430894_5end |
EntrezGene: | IFI16 |
HGNC: | 5395 |
UniProt: | E7EPR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.25e-24 | 48 |
phagocyte | 8.25e-24 | 48 |
classical monocyte | 8.25e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.25e-23 | 42 |
monopoietic cell | 1.85e-21 | 59 |
monocyte | 1.85e-21 | 59 |
monoblast | 1.85e-21 | 59 |
promonocyte | 1.85e-21 | 59 |
myeloid leukocyte | 6.42e-21 | 72 |
macrophage dendritic cell progenitor | 9.64e-20 | 61 |
myeloid lineage restricted progenitor cell | 1.74e-18 | 66 |
granulocyte monocyte progenitor cell | 3.75e-18 | 67 |
somatic stem cell | 8.89e-10 | 433 |
multi fate stem cell | 9.72e-10 | 427 |
stem cell | 1.39e-08 | 441 |
myeloid cell | 3.00e-07 | 108 |
common myeloid progenitor | 3.00e-07 | 108 |
fibroblast | 5.08e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 5.26e-23 | 167 |
hematopoietic system | 1.09e-19 | 98 |
blood island | 1.09e-19 | 98 |
skeletal element | 1.72e-19 | 90 |
skeletal system | 8.35e-19 | 100 |
bone marrow | 1.75e-18 | 76 |
hemolymphoid system | 6.01e-18 | 108 |
mesoderm | 7.08e-18 | 315 |
mesoderm-derived structure | 7.08e-18 | 315 |
presumptive mesoderm | 7.08e-18 | 315 |
bone element | 4.37e-17 | 82 |
immune system | 5.04e-15 | 93 |
lateral plate mesoderm | 2.46e-14 | 203 |
embryonic structure | 1.25e-08 | 564 |
germ layer | 5.54e-08 | 560 |
germ layer / neural crest | 5.54e-08 | 560 |
embryonic tissue | 5.54e-08 | 560 |
presumptive structure | 5.54e-08 | 560 |
germ layer / neural crest derived structure | 5.54e-08 | 560 |
epiblast (generic) | 5.54e-08 | 560 |