FFCP PHASE1:Hg19::chr1:149889362..149889373,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9900 | |EntrezGene=9900 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20566 | |HGNC=20566 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_ENST00000369145_5end | |association_with_transcript=19bp_to_ENST00000369145_5end | ||
|cluster_id=chr1:149889362..149889373,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_2_at_SV2A_5end | |description=CAGE_peak_2_at_SV2A_5end | ||
|id=chr1:149889362..149889373,- | |id=chr1:149889362..149889373,- | ||
|ontology_enrichment_celltype=CL:0000055!2.64e-13!180;CL:0000133!3.65e-12!59;CL:0002319!4.86e-11!25;CL:0000333!4.37e-10!41;CL:0000221!5.11e-08!71;CL:0000095!2.47e-07!17;CL:0000123!2.47e-07!17 | |ontology_enrichment_celltype=CL:0000055!2.64e-13!180;CL:0000133!3.65e-12!59;CL:0002319!4.86e-11!25;CL:0000333!4.37e-10!41;CL:0000221!5.11e-08!71;CL:0000095!2.47e-07!17;CL:0000123!2.47e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0002319;1.76e-11;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.36e-11,25;CL:0000133,1.53e-11,59;CL:0000333,1.03e-08,41;CL:0000221,2.24e-07,72;CL:0000047,8.51e-07,8;CL:0000095,8.83e-07,17;CL:0000123,8.83e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.35e-11;82!UBERON:0006238;5.72e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.39e-46!94;UBERON:0001016!1.39e-46!94;UBERON:0005743!1.35e-44!86;UBERON:0001017!1.60e-43!82;UBERON:0000955!1.18e-36!69;UBERON:0006238!1.18e-36!69;UBERON:0001049!1.00e-33!57;UBERON:0005068!1.00e-33!57;UBERON:0006241!1.00e-33!57;UBERON:0007135!1.00e-33!57;UBERON:0000924!3.03e-33!173;UBERON:0006601!3.03e-33!173;UBERON:0002346!9.81e-33!90;UBERON:0004121!3.52e-32!169;UBERON:0003075!7.59e-32!86;UBERON:0007284!7.59e-32!86;UBERON:0002616!1.54e-31!59;UBERON:0000033!3.71e-29!123;UBERON:0000153!3.92e-28!129;UBERON:0007811!3.92e-28!129;UBERON:0003056!2.55e-27!61;UBERON:0002780!4.08e-25!41;UBERON:0001890!4.08e-25!41;UBERON:0006240!4.08e-25!41;UBERON:0003080!5.97e-25!42;UBERON:0002020!1.52e-21!34;UBERON:0003528!1.52e-21!34;UBERON:0001893!2.41e-21!34;UBERON:0002791!1.20e-20!33;UBERON:0001869!2.37e-20!32;UBERON:0000956!3.32e-16!25;UBERON:0000203!3.32e-16!25;UBERON:0000475!1.00e-15!365;UBERON:0002619!9.71e-15!22;UBERON:0001950!1.69e-13!20;UBERON:0007023!1.18e-12!115;UBERON:0000064!3.53e-12!219;UBERON:0000119!4.09e-12!312;UBERON:0000483!1.09e-11!309;UBERON:0000025!3.57e-10!194;UBERON:0003076!8.41e-10!15;UBERON:0003057!8.41e-10!15;UBERON:0000481!7.24e-09!347;UBERON:0004732!1.50e-08!13;UBERON:0000477!1.67e-08!286;UBERON:0004733!5.45e-08!12;UBERON:0002028!5.45e-08!12;UBERON:0007277!5.45e-08!12;UBERON:0004111!8.05e-08!241;UBERON:0002308!8.54e-07!9;UBERON:0000125!8.54e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.59e-25;34!UBERON:0003528;1.83e-25;34!UBERON:0002020;1.83e-25;34!UBERON:0001869;2.48e-25;32!UBERON:0000073;3.98e-25;53!UBERON:0002616;3.98e-25;53!UBERON:0002791;4.58e-25;32!UBERON:0002780;9.01e-25;41!UBERON:0001890;9.01e-25;41!UBERON:0000955;9.37e-23;68!UBERON:0000956;2.52e-22;25!UBERON:0000203;2.52e-22;25!UBERON:0001017;5.17e-22;75!UBERON:0002619;2.23e-20;22!UBERON:0001016;7.58e-19;83!UBERON:0001950;1.19e-18;20!UBERON:0004732;3.29e-11;13!UBERON:0004733;1.90e-10;12!UBERON:0002028;1.90e-10;12!UBERON:0011216;1.25e-09;132!UBERON:0000125;8.16e-09;9!UBERON:0002308;8.16e-09;9!UBERON:0002420;1.36e-08;9!UBERON:0007245;1.36e-08;9!UBERON:0010009;1.36e-08;9!UBERON:0010011;1.36e-08;9!UBERON:0000454;1.36e-08;9!UBERON:0002680;2.87e-08;9!UBERON:0001895;2.87e-08;9!UBERON:0000200;3.86e-07;6!UBERON:0009663;6.89e-07;7!UBERON:0010314;7.54e-07;132 | |||
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| ||
|short_description=p2@SV2A | |short_description=p2@SV2A | ||
}} | }} |
Latest revision as of 20:49, 16 September 2015
Short description: | p2@SV2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SV2A_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 19bp_to_ENST00000369145_5end |
EntrezGene: | SV2A |
HGNC: | 20566 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.36e-11 | 25 |
neurectodermal cell | 1.53e-11 | 59 |
migratory neural crest cell | 1.03e-08 | 41 |
ectodermal cell | 2.24e-07 | 72 |
neuronal stem cell | 8.51e-07 | 8 |
neuron associated cell | 8.83e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 8.83e-07 | 17 |