FFCP PHASE1:Hg19::chr1:110754094..110754115,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3749 | |EntrezGene=3749 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6236 | |HGNC=6236 | ||
|TSSclassifier=strong | |||
|UniProt=Q03721 | |UniProt=Q03721 | ||
|association_with_transcript=0bp_to_ENST00000369787,ENST00000413138_5end | |association_with_transcript=0bp_to_ENST00000369787,ENST00000413138_5end | ||
|cluster_id=chr1:110754094..110754115,+ | |||
|description=CAGE_peak_5_at_KCNC4_5end | |description=CAGE_peak_5_at_KCNC4_5end | ||
|id=chr1:110754094..110754115,+ | |id=chr1:110754094..110754115,+ | ||
|ontology_enrichment_celltype=CL:0002539!7.04e-08!10 | |ontology_enrichment_celltype=CL:0002539!7.04e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0002539;1.51e-13;10!CL:0000359;4.11e-12;32!CL:0000192;3.32e-08;43!CL:0000077;4.12e-07;19!CL:0002591;5.40e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,1.18e-13,10;CL:0000359,1.22e-12,32;CL:0000222,8.11e-11,121;CL:0000192,5.14e-09,43;CL:0000514,5.14e-09,43;CL:0000077,4.60e-07,19;CL:0002591,6.24e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000514;3.32e-08;43 | |||
|ontology_enrichment_disease=DOID:2394!1.45e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:0060084;5.50e-18;3!DOID:127;5.50e-18;3!DOID:2394;5.73e-18;14!DOID:0060072;1.28e-13;4!DOID:120;6.74e-09;27!DOID:193;3.18e-08;29 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.41e-18,3;DOID:127,4.41e-18,3;DOID:2394,6.66e-18,14;DOID:0060072,1.09e-13,4;DOID:120,7.25e-09,27;DOID:193,3.40e-08,29 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.60e-15!115;UBERON:0001637!1.00e-13!42;UBERON:0003509!1.00e-13!42;UBERON:0004572!1.00e-13!42;UBERON:0004573!4.15e-12!33;UBERON:0004571!4.15e-12!33;UBERON:0000025!2.39e-11!194;UBERON:0004872!3.15e-11!84;UBERON:0000947!8.20e-11!21;UBERON:0010191!8.20e-11!21;UBERON:0001981!2.15e-10!60;UBERON:0007500!2.15e-10!60;UBERON:0004537!2.15e-10!60;UBERON:0006965!2.15e-10!60;UBERON:0004111!2.95e-10!241;UBERON:0000055!3.80e-10!69;UBERON:0001009!1.71e-09!113;UBERON:0004535!6.29e-09!110;UBERON:0000477!5.38e-08!286;UBERON:0004237!7.04e-08!10;UBERON:0004695!7.04e-08!10;UBERON:0002111!7.04e-08!10;UBERON:0004178!7.04e-08!10;UBERON:0001135!1.07e-07!15;UBERON:0002049!1.20e-07!79;UBERON:0007798!1.20e-07!79;UBERON:0000991!6.42e-07!21;UBERON:0009196!6.42e-07!21;UBERON:0009117!6.42e-07!21;UBERON:0005564!6.42e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0002118;3.30e-17;5!UBERON:0004237;1.51e-13;10!UBERON:0004695;1.51e-13;10!UBERON:0002111;1.51e-13;10!UBERON:0004178;1.51e-13;10!UBERON:0004573;1.08e-10;33!UBERON:0004571;1.08e-10;33!UBERON:0000992;4.87e-10;13!UBERON:0001135;5.96e-09;15!UBERON:0003134;7.95e-09;33!UBERON:0000947;8.26e-09;21!UBERON:0010191;8.26e-09;21!UBERON:0001637;1.49e-07;42!UBERON:0003509;1.49e-07;42!UBERON:0004572;1.49e-07;42!UBERON:0000474;6.34e-07;37!UBERON:0000055;6.35e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002118,2.35e-17,5;UBERON:0004237,1.18e-13,10;UBERON:0004695,1.18e-13,10;UBERON:0002111,1.18e-13,10;UBERON:0004178,1.18e-13,10;UBERON:0004573,3.56e-12,33;UBERON:0004571,3.56e-12,33;UBERON:0001637,1.89e-11,42;UBERON:0003509,1.89e-11,42;UBERON:0004572,1.89e-11,42;UBERON:0000992,4.56e-10,13;UBERON:0007500,3.09e-09,59;UBERON:0001981,3.09e-09,59;UBERON:0004537,3.09e-09,59;UBERON:0006965,3.09e-09,59;UBERON:0001135,5.07e-09,15;UBERON:0000947,6.57e-09,21;UBERON:0010191,6.57e-09,21;UBERON:0003134,2.64e-08,37;UBERON:0000474,2.64e-08,37;UBERON:0000055,9.62e-08,68;UBERON:0003100,2.23e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,1.04535523804977,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.434473211648397,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,1.72046919021225,0.347140501607594,0,0.838998872419812,0.825354125820202,0,0.258416759169329,0.35576626268671,0,0,0,0,0.367663080345869,0,1.16089646769304,0,0.563057402416611,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.860509862246441,0.354668382198357,0,0,0,0.311211035399766,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.226864366320042,0.358779271377724,0,0.211931901159562,0.600182192168805,0.206105058476878,0,0,1.35021065793013,0.487185025805993,0.757301322732344,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.52159065589379,2.61460037580088,3.499054691372,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0.246381468041427,0,0.348631135379878,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,0,0,1.54227252690289,0,0.501689773854853,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0.929691098594572,5.03699754929024,2.0911118104818,1.54016790088044,1.59691809095107,1.73986598415015,0.18532421910392,0,0,0,0,0,0,2.54562598340749,0,0,0,0.117812402345686,2.42618977887979,0,0,0,0.974853958525138,0,0,0,2.26016233240486,8.82184549673799,0.66343897524122,0,0,0,0,0,0.563391205064483,0,0,0,0.354761064070598,0,0,0,0,0,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0.169291777801603,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.442317039724898,0.886642856860642,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0.889563386041866,1.72989514525104,0.522109747527277,0.067401132980677,0,0.468528891450678,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0.817220436669454,0,0.137539436597234,0,0,0,0.668245123238271,0,0.630445658393585,1.88836517285993,0,0,0,0,0,0,2.71499800876856,6.91377192961014,4.89881040164114,0,0,0.511164065356265,0,0,0,0.775697738169303,0.26446520348538,0,0,0.320362237703084,0.78602152549833,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,0.110929051536852,0.683060432355218,0.553394539744923,0,0,0,0,0.936669811613763,0.869526171664951,0.149254802886874,0,0,0,0,0,0.457680136793847,0.907385542579434,0.777186002913902,0.295710299979268,0.63718706865481,0.449803112163605,0.931577741257556,1.24411862352257,0.53168342911599,0.521745061811734,1.05180326298053,5.33127297036314,1.62748293281865,0,1.39633724155235,1.85613503951397,1.19428766609585,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0.219284049578707,1.06013487567529,1.3503982678964,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0.323474434190045,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,1.41696576325585,0,0.41023272848151,0,1.24483054435592,0.161475645631851,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.742913430802341,0,0.826747186004736,0.317079050969534,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,2.31097092121228,0.263091094251396,0,0,0.235479278551542,0,0,0,0,0,0.643288897589907,0.158013611732727,0,0,0,0.207216164163037,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0.329821550236287,0,0.154348316215889,0,0,0.245148321753905,0,0.588925401344836,0,0,0,0.187967835959707,0.580120991762195,0,0,0,0,0.730336388246517,0.458729283404541,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0,0.380095503034311,0.203977659483963,0,0.459474497674225,0.50141507858475,0,0,0,0,0,0,0.710478008196067,0.744896571550295,0,0.0636471582781649,0.202117188958219,1.08858373948481,0.342233301085281,0.202056159043763,0.215166616178029,0,0,0,0,0.0898252021065869,0,0.611207220914332,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,1.04535523804977,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.434473211648397,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,1.72046919021225,0.347140501607594,0,0.838998872419812,0.825354125820202,0,0.258416759169329,0.35576626268671,0,0,0,0,0.367663080345869,0,1.16089646769304,0,0.563057402416611,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.860509862246441,0.354668382198357,0,0,0,0.311211035399766,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.226864366320042,0.358779271377724,0,0.211931901159562,0.600182192168805,0.206105058476878,0,0,1.35021065793013,0.487185025805993,0.757301322732344,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.52159065589379,2.61460037580088,3.499054691372,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0.246381468041427,0,0.348631135379878,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,0,0,1.54227252690289,0,0.501689773854853,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0.929691098594572,5.03699754929024,2.0911118104818,1.54016790088044,1.59691809095107,1.73986598415015,0.18532421910392,0,0,0,0,0,0,2.54562598340749,0,0,0,0.117812402345686,2.42618977887979,0,0,0,0.974853958525138,0,0,0,2.26016233240486,8.82184549673799,0.66343897524122,0,0,0,0,0,0.563391205064483,0,0,0,0.354761064070598,0,0,0,0,0,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0.169291777801603,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.442317039724898,0.886642856860642,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0.889563386041866,1.72989514525104,0.522109747527277,0.067401132980677,0,0.468528891450678,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0.817220436669454,0,0.137539436597234,0,0,0,0.668245123238271,0,0.630445658393585,1.88836517285993,0,0,0,0,0,0,2.71499800876856,6.91377192961014,4.89881040164114,0,0,0.511164065356265,0,0,0,0.775697738169303,0.26446520348538,0,0,0.320362237703084,0.78602152549833,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,0.110929051536852,0.683060432355218,0.553394539744923,0,0,0,0,0.936669811613763,0.869526171664951,0.149254802886874,0,0,0,0,0,0.457680136793847,0.907385542579434,0.777186002913902,0.295710299979268,0.63718706865481,0.449803112163605,0.931577741257556,1.24411862352257,0.53168342911599,0.521745061811734,1.05180326298053,5.33127297036314,1.62748293281865,0,1.39633724155235,1.85613503951397,1.19428766609585,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0.219284049578707,1.06013487567529,1.3503982678964,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0.323474434190045,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,1.41696576325585,0,0.41023272848151,0,1.24483054435592,0.161475645631851,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.742913430802341,0,0.826747186004736,0.317079050969534,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,2.31097092121228,0.263091094251396,0,0,0.235479278551542,0,0,0,0,0,0.643288897589907,0.158013611732727,0,0,0,0.207216164163037,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0.329821550236287,0,0.154348316215889,0,0,0.245148321753905,0,0.588925401344836,0,0,0,0.187967835959707,0.580120991762195,0,0,0,0,0.730336388246517,0.458729283404541,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0,0.380095503034311,0.203977659483963,0,0.459474497674225,0.50141507858475,0,0,0,0,0,0,0.710478008196067,0.744896571550295,0,0.0636471582781649,0.202117188958219,1.08858373948481,0.342233301085281,0.202056159043763,0.215166616178029,0,0,0,0,0.0898252021065869,0,0.611207220914332,0,0,0.402547587182052,0 | ||
|short_description=p5@KCNC4 | |short_description=p5@KCNC4 | ||
}} | }} |
Latest revision as of 00:28, 16 September 2015
Short description: | p5@KCNC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_KCNC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000369787, ENST00000413138_5end |
EntrezGene: | KCNC4 |
HGNC: | 6236 |
UniProt: | Q03721 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 1.18e-13 | 10 |
vascular associated smooth muscle cell | 1.22e-12 | 32 |
mesodermal cell | 8.11e-11 | 121 |
smooth muscle cell | 5.14e-09 | 43 |
smooth muscle myoblast | 5.14e-09 | 43 |
mesothelial cell | 4.60e-07 | 19 |
smooth muscle cell of the pulmonary artery | 6.24e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
right ovary | 2.35e-17 | 5 |
blood vessel smooth muscle | 1.18e-13 | 10 |
arterial system smooth muscle | 1.18e-13 | 10 |
artery smooth muscle tissue | 1.18e-13 | 10 |
aorta smooth muscle tissue | 1.18e-13 | 10 |
systemic artery | 3.56e-12 | 33 |
systemic arterial system | 3.56e-12 | 33 |
artery | 1.89e-11 | 42 |
arterial blood vessel | 1.89e-11 | 42 |
arterial system | 1.89e-11 | 42 |
female gonad | 4.56e-10 | 13 |
epithelial tube open at both ends | 3.09e-09 | 59 |
blood vessel | 3.09e-09 | 59 |
blood vasculature | 3.09e-09 | 59 |
vascular cord | 3.09e-09 | 59 |
smooth muscle tissue | 5.07e-09 | 15 |
aorta | 6.57e-09 | 21 |
aortic system | 6.57e-09 | 21 |
female reproductive organ | 2.64e-08 | 37 |
female reproductive system | 2.64e-08 | 37 |
vessel | 9.62e-08 | 68 |
female organism | 2.23e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.41e-18 | 3 |
leiomyoma | 4.41e-18 | 3 |
ovarian cancer | 6.66e-18 | 14 |
benign neoplasm | 1.09e-13 | 4 |
female reproductive organ cancer | 7.25e-09 | 27 |
reproductive organ cancer | 3.40e-08 | 29 |