FFCP PHASE1:Hg19::chr11:16629630..16629643,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr11:16629630..16629643,-
|short_description=p20@SOX6
|description=CAGE_peak_20_at_SOX6_5end
|association_with_transcript=-356bp_to_ENST00000525835_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55553 | |EntrezGene=55553 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16421 | |HGNC=16421 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-356bp_to_ENST00000525835_5end | |||
|cluster_id=chr11:16629630..16629643,- | |||
|coexpression_cluster_id=C90 | |||
|description=CAGE_peak_20_at_SOX6_5end | |||
|id=chr11:16629630..16629643,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.91e-19;1!UBERON:0003056;2.97e-07;3 | |||
|ontology_enrichment_disease=DOID:171!1.23e-10!10 | |||
|ontology_enrichment_disease_v019=DOID:171;2.97e-45;10!DOID:3095;1.02e-20;22!DOID:2994;1.02e-20;22!DOID:3193;1.57e-10;2!DOID:962;1.57e-10;2!DOID:1192;1.93e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.71e-45,10;DOID:3095,9.76e-21,22;DOID:2994,9.76e-21,22;DOID:3193,1.57e-10,2;DOID:962,1.57e-10,2;DOID:1192,1.93e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0002346!3.70e-17!90;UBERON:0000073!8.69e-13!94;UBERON:0001016!8.69e-13!94;UBERON:0001049!1.04e-12!57;UBERON:0005068!1.04e-12!57;UBERON:0006241!1.04e-12!57;UBERON:0007135!1.04e-12!57;UBERON:0000924!2.12e-12!173;UBERON:0006601!2.12e-12!173;UBERON:0003075!2.38e-12!86;UBERON:0007284!2.38e-12!86;UBERON:0002780!5.41e-12!41;UBERON:0001890!5.41e-12!41;UBERON:0006240!5.41e-12!41;UBERON:0000955!5.90e-12!69;UBERON:0006238!5.90e-12!69;UBERON:0003080!1.26e-11!42;UBERON:0001017!1.32e-11!82;UBERON:0001893!4.56e-11!34;UBERON:0005743!8.23e-11!86;UBERON:0002616!1.04e-10!59;UBERON:0001950!1.64e-10!20;UBERON:0007023!1.83e-10!115;UBERON:0000200!2.03e-10!6;UBERON:0001869!3.10e-10!32;UBERON:0002791!7.59e-10!33;UBERON:0003978!1.57e-09!3;UBERON:0009751!1.57e-09!3;UBERON:0000946!1.57e-09!3;UBERON:0002523!1.57e-09!3;UBERON:0005983!1.57e-09!3;UBERON:0002165!1.57e-09!3;UBERON:0002062!1.57e-09!3;UBERON:0007280!1.57e-09!3;UBERON:0002619!2.01e-09!22;UBERON:0004121!3.55e-09!169;UBERON:0002771!1.74e-08!3;UBERON:0000956!4.15e-08!25;UBERON:0000203!4.15e-08!25;UBERON:0002020!4.83e-08!34;UBERON:0003528!4.83e-08!34;UBERON:0003056!5.11e-08!61;UBERON:0003714!2.87e-07!2;UBERON:0000007!4.71e-07!2;UBERON:0002133!4.99e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;3.22e-72;4!UBERON:0000923;3.22e-72;4!UBERON:0010316;3.22e-72;4!UBERON:0005291;3.22e-72;4!UBERON:0002050;6.46e-58;5!UBERON:0005423;6.46e-58;5!UBERON:0003714;5.68e-37;2!UBERON:0000941;3.91e-19;1!UBERON:0001785;3.91e-19;1!UBERON:0002464;3.91e-19;1!UBERON:0004904;3.91e-19;1!UBERON:0001021;3.91e-19;1!UBERON:0005162;2.99e-10;2!UBERON:0000122;2.99e-10;2!UBERON:0000010;5.20e-09;8!UBERON:0000922;2.43e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003714,4.73e-37,2;UBERON:0000941,3.25e-19,1;UBERON:0001785,3.25e-19,1;UBERON:0002464,3.25e-19,1;UBERON:0004904,3.25e-19,1;UBERON:0001021,3.25e-19,1;UBERON:0003902,3.25e-19,1;UBERON:0005425,3.25e-19,1;UBERON:0005162,2.72e-10,2;UBERON:0000122,2.72e-10,2;UBERON:0000010,5.00e-09,8;UBERON:0002346,2.54e-07,86 | |||
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| ||
|short_description=p20@SOX6 | |||
}} | }} |
Latest revision as of 23:16, 16 September 2015
Short description: | p20@SOX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SOX6_5end |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | -356bp_to_ENST00000525835_5end |
EntrezGene: | SOX6 |
HGNC: | 16421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tissue | 4.73e-37 | 2 |
cranial nerve II | 3.25e-19 | 1 |
cranial nerve | 3.25e-19 | 1 |
nerve trunk | 3.25e-19 | 1 |
nerve connecting eye with brain | 3.25e-19 | 1 |
nerve | 3.25e-19 | 1 |
retinal neural layer | 3.25e-19 | 1 |
presumptive neural retina | 3.25e-19 | 1 |
multi cell component structure | 2.72e-10 | 2 |
neuron projection bundle | 2.72e-10 | 2 |
peripheral nervous system | 5.00e-09 | 8 |
neurectoderm | 2.54e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.71e-45 | 10 |
germ cell and embryonal cancer | 9.76e-21 | 22 |
germ cell cancer | 9.76e-21 | 22 |
peripheral nerve sheath neoplasm | 1.57e-10 | 2 |
neurofibroma | 1.57e-10 | 2 |
peripheral nervous system neoplasm | 1.93e-07 | 3 |