FFCP PHASE1:Hg19::chr19:49470000..49470017,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=118bp_to_BC007552_5end | |association_with_transcript=118bp_to_BC007552_5end | ||
|cluster_id=chr19:49470000..49470017,- | |||
|coexpression_cluster_id=C467 | |||
|description=CAGE_peak_4_at_BC007552_5end | |description=CAGE_peak_4_at_BC007552_5end | ||
|id=chr19:49470000..49470017,- | |id=chr19:49470000..49470017,- | ||
|ontology_enrichment_celltype=CL:0002194!4.70e-17!63;CL:0000576!4.70e-17!63;CL:0000040!4.70e-17!63;CL:0000559!4.70e-17!63;CL:0002009!4.24e-16!65;CL:0000839!5.96e-13!70;CL:0000557!2.45e-12!71;CL:0000766!1.54e-11!76;CL:0002057!6.14e-11!42;CL:0000860!1.71e-10!45;CL:0000048!2.80e-10!430;CL:0002371!2.94e-10!591;CL:0000144!4.59e-10!625;CL:0000723!8.30e-10!436;CL:0000548!1.12e-09!679;CL:0000004!1.12e-09!679;CL:0000255!1.12e-09!679;CL:0000034!1.59e-09!444;CL:0000012!2.64e-09!682;CL:0002320!1.10e-07!365;CL:0000003!3.52e-07!722 | |ontology_enrichment_celltype=CL:0002194!4.70e-17!63;CL:0000576!4.70e-17!63;CL:0000040!4.70e-17!63;CL:0000559!4.70e-17!63;CL:0002009!4.24e-16!65;CL:0000839!5.96e-13!70;CL:0000557!2.45e-12!71;CL:0000766!1.54e-11!76;CL:0002057!6.14e-11!42;CL:0000860!1.71e-10!45;CL:0000048!2.80e-10!430;CL:0002371!2.94e-10!591;CL:0000144!4.59e-10!625;CL:0000723!8.30e-10!436;CL:0000548!1.12e-09!679;CL:0000004!1.12e-09!679;CL:0000255!1.12e-09!679;CL:0000034!1.59e-09!444;CL:0000012!2.64e-09!682;CL:0002320!1.10e-07!365;CL:0000003!3.52e-07!722 | ||
|ontology_enrichment_celltype_v019=CL:0000473;8.38e-14;39!CL:0000234;8.38e-14;39!CL:0000860;3.65e-10;33!CL:0002057;3.65e-10;33!CL:0000235;6.46e-10;6!CL:0000576;1.12e-09;48!CL:0000766;3.90e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,4.84e-20,59;CL:0000576,4.84e-20,59;CL:0000040,4.84e-20,59;CL:0000559,4.84e-20,59;CL:0002009,5.27e-19,61;CL:0000473,3.42e-17,48;CL:0000234,3.42e-17,48;CL:0000839,1.06e-16,66;CL:0000557,2.77e-16,67;CL:0000766,1.34e-15,72;CL:0000048,5.07e-12,427;CL:0000723,1.94e-11,433;CL:0000860,2.73e-11,42;CL:0002057,2.73e-11,42;CL:0000034,1.08e-10,441;CL:0002320,1.38e-10,361;CL:0000235,7.02e-10,6;CL:0000134,2.65e-09,354;CL:0000763,1.47e-08,108;CL:0000049,1.47e-08,108;CL:0000219,1.34e-07,386;CL:0002087,1.95e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.23e-16!167;UBERON:0000926!1.90e-13!448;UBERON:0004120!1.90e-13!448;UBERON:0006603!1.90e-13!448;UBERON:0002371!1.00e-12!80;UBERON:0002390!1.24e-12!102;UBERON:0003061!1.24e-12!102;UBERON:0004765!4.53e-12!101;UBERON:0001434!4.53e-12!101;UBERON:0002193!4.63e-12!112;UBERON:0002405!4.38e-11!115;UBERON:0001474!4.64e-11!86;UBERON:0003081!2.62e-10!216;UBERON:0002384!2.86e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.28e-08;9!UBERON:0000042;2.28e-08;9!UBERON:0003688;3.08e-07;6!UBERON:0002358;3.08e-07;6!UBERON:0003684;3.08e-07;6!UBERON:0001178;3.08e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,3.00e-20,167;UBERON:0001434,1.62e-18,100;UBERON:0004765,1.05e-16,90;UBERON:0002371,5.90e-16,76;UBERON:0002390,3.39e-15,98;UBERON:0003061,3.39e-15,98;UBERON:0001474,6.55e-15,82;UBERON:0000926,2.73e-14,315;UBERON:0004120,2.73e-14,315;UBERON:0006603,2.73e-14,315;UBERON:0002193,2.92e-14,108;UBERON:0002405,1.26e-12,93;UBERON:0003081,9.68e-12,203;UBERON:0002384,4.30e-10,371;UBERON:0003688,6.33e-07,6;UBERON:0002358,6.33e-07,6;UBERON:0003684,6.33e-07,6;UBERON:0001178,6.33e-07,6 | |||
|phase1_expression=1.63510541343501,1.92690471501885,1.26858963686374,6.00439790118782,2.68176656656373,5.23403114460221,0,0,0.522371256399677,0,1.39560233594486,0,0,0.495065411840187,3.97676850873499,2.01697543935533,2.41077811209591,0.730310090387373,2.92759679274304,0,0.816002764977012,0.626909442956176,0,0,0.251085279189606,0.152826811495903,0,0,0,0,0.309632246632152,0,0.6024118375565,0.369754010166788,0.0774672005803016,0,0,0,0.200544447470142,1.51907609501096,13.4349284543955,2.59114932815184,6.43938919085466,1.59938062657521,0.755751887377619,1.4555043671269,0.697287110717054,1.6446715520873,2.47765096716083,3.16461631554365,2.0492856522328,0.709446689665756,1.03423704220986,1.93645405075148,1.35426486594342,2.44715041405386,2.18324920046277,0.449446968890169,1.53041946185451,0,1.27867425159808,0.989553900560148,1.19678194572979,0.426224750532694,1.7412554317715,1.13477044938228,1.86846674698672,2.26123798731069,1.5644487552606,0.434377689410233,1.81619850790011,1.10483290796269,0.316462387440884,0.845021145247767,1.27562579979026,0.628975936525128,0.673971786878971,0.600707571366025,0,0.855038231223746,1.59133341759272,1.64397738388171,0,0,0,0,0,0,0.661044872784862,0,0.569212969109448,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0,0.651844533267181,0,0,0,0,0.664601683750863,0.270803863765016,0.384273959177026,0.260118695119756,0.164437904603676,0,0,0,0.267540828089713,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,0.895037932904712,1.44575660953827,0.50133791063589,1.59331170856906,0,0.973269740605272,0.472674085820339,0.886917589850256,0.527008714158756,0.130979075497713,0,0.741568885568859,4.21911611751088,7.13931922926996,10.5036788809903,0,0,0,0,0.860234595106124,0.694281003215189,1.13061588384802,0.419499436209906,0,0.626984899610432,0.258416759169329,0,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0.267899184852239,0.44905874525234,0.225222960966644,0,0,0.732806975721629,0,0,0,0.993943903390637,0.12663051166458,0.132409180813219,0,0.709336764396714,0,1.06748995729705,1.72667283892012,0,0.942974704487816,1.30769522490767,0,3.45705554687999,0,1.87296046098192,1.1409436430889,1.64393548606981,0.587172493218824,0.647491777472526,0.561803226808994,0.204154171254893,0.737005903870608,0.723280468230358,0,3.70900393917835,0,2.87447256726495,0.673344455816265,0.125118519871964,0,1.31693286264251,2.14541457059314,1.50238058906597,0.680593098960126,0.179389635688862,1.2813443329114,0.211931901159562,0,0.103052529238439,0,0.558350568994769,0,0.194874010322397,0,0.276149695926898,0,0,0.503760491138201,0,1.35282597214308,0,0,0.365921118388786,0,0.348581828608555,0.518305275076852,0.504641701751257,0.72995471815166,0,3.21620469096443,0,2.3218396401599,12.271951188383,0.473227200159376,0.505754070234305,0.482022059766964,0.661763836394364,1.08939722046203,0.237270619111097,0.674156540800822,0.588664395376038,0.769494313892781,0,0,0,2.94017422771084,0,0,2.36315962672562,0,0,0.343135620597051,0.439001141634502,0,0.201057944823262,0.0925884451585296,0,1.03993478527958,0,0.463721619900307,0.352226082707465,0.288732895522148,0.925971025153221,1.52203321787679,0.790204397959275,0,8.8638122191463,2.34004265139238,15.309009715739,3.74935335947108,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.126995788584338,0,1.17217447210047,1.71072446022705,0.308482478109971,0.901029173531752,0.571652865261156,0,0,0.07333828582095,0.775630294546667,7.15312891703765,0.845302752556,0.26593811658487,1.04007436911366,0.514414748524284,2.83698264046557,0.266422179016099,1.00084595560703,3.7983512377401,1.64648067356154,0.325736184293735,1.06617584622764,0,1.80863626235752,0.871533458600294,0.599837947092342,32.8384207731214,21.5970549315814,10.5416969741516,0.239624855491583,0,0,0.723906533337896,1.43833425785268,0.179060963239896,0.896681151948218,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0.637938751653163,0.749007023947182,5.9832291840805,0,0.613457458595699,2.00068208423871,3.52644530809656,1.66376689224646,1.60586089917446,2.83864347061082,0.585707074963566,0.300946099727719,0,3.10419213877515,0,0.921845842708516,0.521301686808497,1.17480694477644,0.686286847621712,0.206768026122887,1.50999940573032,0.213455115606889,3.33440328590885,0,0.907170879989041,0.992431231275107,0,2.24528075546459,1.40953064181271,1.02341449813341,1.44768529029247,7.42090332224955,0.925258162815933,0.532685175939381,0.0821271560138091,0,1.04589340613963,0.120859449591622,0.200506470303285,0.460404944679482,0.803701137152247,1.82091168006717,2.49136388422906,0,0.231046011313244,0,0,0,1.13733384070897,0.850468526382578,0.431831832204279,0,0,1.50506932156456,0,0,0.671624264166535,0,0.261435451024901,0.512900250232778,0,0,0.824328093181778,0,0.247528499761764,0,1.30012049207304,1.6068392984416,0,2.31072925671967,0.921022048356777,0.551346289938122,0.214840489736547,1.74020032697074,0.852266274161009,0.356128142586949,0.165284915360978,0.384380134730212,0,0.4046311234222,1.39453664789186,0,0,0.61606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| |phase1_expression=1.63510541343501,1.92690471501885,1.26858963686374,6.00439790118782,2.68176656656373,5.23403114460221,0,0,0.522371256399677,0,1.39560233594486,0,0,0.495065411840187,3.97676850873499,2.01697543935533,2.41077811209591,0.730310090387373,2.92759679274304,0,0.816002764977012,0.626909442956176,0,0,0.251085279189606,0.152826811495903,0,0,0,0,0.309632246632152,0,0.6024118375565,0.369754010166788,0.0774672005803016,0,0,0,0.200544447470142,1.51907609501096,13.4349284543955,2.59114932815184,6.43938919085466,1.59938062657521,0.755751887377619,1.4555043671269,0.697287110717054,1.6446715520873,2.47765096716083,3.16461631554365,2.0492856522328,0.709446689665756,1.03423704220986,1.93645405075148,1.35426486594342,2.44715041405386,2.18324920046277,0.449446968890169,1.53041946185451,0,1.27867425159808,0.989553900560148,1.19678194572979,0.426224750532694,1.7412554317715,1.13477044938228,1.86846674698672,2.26123798731069,1.5644487552606,0.434377689410233,1.81619850790011,1.10483290796269,0.316462387440884,0.845021145247767,1.27562579979026,0.628975936525128,0.673971786878971,0.600707571366025,0,0.855038231223746,1.59133341759272,1.64397738388171,0,0,0,0,0,0,0.661044872784862,0,0.569212969109448,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0,0.651844533267181,0,0,0,0,0.664601683750863,0.270803863765016,0.384273959177026,0.260118695119756,0.164437904603676,0,0,0,0.267540828089713,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,0.895037932904712,1.44575660953827,0.50133791063589,1.59331170856906,0,0.973269740605272,0.472674085820339,0.886917589850256,0.527008714158756,0.130979075497713,0,0.741568885568859,4.21911611751088,7.13931922926996,10.5036788809903,0,0,0,0,0.860234595106124,0.694281003215189,1.13061588384802,0.419499436209906,0,0.626984899610432,0.258416759169329,0,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0.267899184852239,0.44905874525234,0.225222960966644,0,0,0.732806975721629,0,0,0,0.993943903390637,0.12663051166458,0.132409180813219,0,0.709336764396714,0,1.06748995729705,1.72667283892012,0,0.942974704487816,1.30769522490767,0,3.45705554687999,0,1.87296046098192,1.1409436430889,1.64393548606981,0.587172493218824,0.647491777472526,0.561803226808994,0.204154171254893,0.737005903870608,0.723280468230358,0,3.70900393917835,0,2.87447256726495,0.673344455816265,0.125118519871964,0,1.31693286264251,2.14541457059314,1.50238058906597,0.680593098960126,0.179389635688862,1.2813443329114,0.211931901159562,0,0.103052529238439,0,0.558350568994769,0,0.194874010322397,0,0.276149695926898,0,0,0.503760491138201,0,1.35282597214308,0,0,0.365921118388786,0,0.348581828608555,0.518305275076852,0.504641701751257,0.72995471815166,0,3.21620469096443,0,2.3218396401599,12.271951188383,0.473227200159376,0.505754070234305,0.482022059766964,0.661763836394364,1.08939722046203,0.237270619111097,0.674156540800822,0.588664395376038,0.769494313892781,0,0,0,2.94017422771084,0,0,2.36315962672562,0,0,0.343135620597051,0.439001141634502,0,0.201057944823262,0.0925884451585296,0,1.03993478527958,0,0.463721619900307,0.352226082707465,0.288732895522148,0.925971025153221,1.52203321787679,0.790204397959275,0,8.8638122191463,2.34004265139238,15.309009715739,3.74935335947108,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.126995788584338,0,1.17217447210047,1.71072446022705,0.308482478109971,0.901029173531752,0.571652865261156,0,0,0.07333828582095,0.775630294546667,7.15312891703765,0.845302752556,0.26593811658487,1.04007436911366,0.514414748524284,2.83698264046557,0.266422179016099,1.00084595560703,3.7983512377401,1.64648067356154,0.325736184293735,1.06617584622764,0,1.80863626235752,0.871533458600294,0.599837947092342,32.8384207731214,21.5970549315814,10.5416969741516,0.239624855491583,0,0,0.723906533337896,1.43833425785268,0.179060963239896,0.896681151948218,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0.637938751653163,0.749007023947182,5.9832291840805,0,0.613457458595699,2.00068208423871,3.52644530809656,1.66376689224646,1.60586089917446,2.83864347061082,0.585707074963566,0.300946099727719,0,3.10419213877515,0,0.921845842708516,0.521301686808497,1.17480694477644,0.686286847621712,0.206768026122887,1.50999940573032,0.213455115606889,3.33440328590885,0,0.907170879989041,0.992431231275107,0,2.24528075546459,1.40953064181271,1.02341449813341,1.44768529029247,7.42090332224955,0.925258162815933,0.532685175939381,0.0821271560138091,0,1.04589340613963,0.120859449591622,0.200506470303285,0.460404944679482,0.803701137152247,1.82091168006717,2.49136388422906,0,0.231046011313244,0,0,0,1.13733384070897,0.850468526382578,0.431831832204279,0,0,1.50506932156456,0,0,0.671624264166535,0,0.261435451024901,0.512900250232778,0,0,0.824328093181778,0,0.247528499761764,0,1.30012049207304,1.6068392984416,0,2.31072925671967,0.921022048356777,0.551346289938122,0.214840489736547,1.74020032697074,0.852266274161009,0.356128142586949,0.165284915360978,0.384380134730212,0,0.4046311234222,1.39453664789186,0,0,0.61606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| ||
|short_description=p4@BC007552 | |short_description=p4@BC007552 | ||
}} | }} |
Latest revision as of 15:58, 27 July 2015
Short description: | p4@BC007552 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BC007552_5end |
Coexpression cluster: | C467_CD14_Monocytederived_Mesenchymal_Macrophage_Dendritic_mucinous_liver |
Association with transcript: | 118bp_to_BC007552_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 4.84e-20 | 59 |
monocyte | 4.84e-20 | 59 |
monoblast | 4.84e-20 | 59 |
promonocyte | 4.84e-20 | 59 |
macrophage dendritic cell progenitor | 5.27e-19 | 61 |
defensive cell | 3.42e-17 | 48 |
phagocyte | 3.42e-17 | 48 |
myeloid lineage restricted progenitor cell | 1.06e-16 | 66 |
granulocyte monocyte progenitor cell | 2.77e-16 | 67 |
myeloid leukocyte | 1.34e-15 | 72 |
multi fate stem cell | 5.07e-12 | 427 |
somatic stem cell | 1.94e-11 | 433 |
classical monocyte | 2.73e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.73e-11 | 42 |
stem cell | 1.08e-10 | 441 |
connective tissue cell | 1.38e-10 | 361 |
macrophage | 7.02e-10 | 6 |
mesenchymal cell | 2.65e-09 | 354 |
myeloid cell | 1.47e-08 | 108 |
common myeloid progenitor | 1.47e-08 | 108 |
motile cell | 1.34e-07 | 386 |
nongranular leukocyte | 1.95e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 3.00e-20 | 167 |
skeletal system | 1.62e-18 | 100 |
skeletal element | 1.05e-16 | 90 |
bone marrow | 5.90e-16 | 76 |
hematopoietic system | 3.39e-15 | 98 |
blood island | 3.39e-15 | 98 |
bone element | 6.55e-15 | 82 |
mesoderm | 2.73e-14 | 315 |
mesoderm-derived structure | 2.73e-14 | 315 |
presumptive mesoderm | 2.73e-14 | 315 |
hemolymphoid system | 2.92e-14 | 108 |
immune system | 1.26e-12 | 93 |
lateral plate mesoderm | 9.68e-12 | 203 |
connective tissue | 4.30e-10 | 371 |
omentum | 6.33e-07 | 6 |
peritoneum | 6.33e-07 | 6 |
abdominal cavity | 6.33e-07 | 6 |
visceral peritoneum | 6.33e-07 | 6 |