FFCP PHASE1:Hg19::chr13:36046061..36046077,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:36046061..36046077,+ | |||
|coexpression_cluster_id=C699 | |||
|description=CAGE_peak_at_chr13:36046061..36046077,+ | |description=CAGE_peak_at_chr13:36046061..36046077,+ | ||
|id=chr13:36046061..36046077,+ | |id=chr13:36046061..36046077,+ | ||
|ontology_enrichment_celltype=CL:0000064!9.86e-09!3;CL:0005012!9.86e-09!3;CL:0000067!9.86e-09!3;CL:0002304!9.86e-09!3;CL:0000197!5.60e-07!6;CL:0000098!5.60e-07!6;CL:0002167!5.60e-07!6 | |ontology_enrichment_celltype=CL:0000064!9.86e-09!3;CL:0005012!9.86e-09!3;CL:0000067!9.86e-09!3;CL:0002304!9.86e-09!3;CL:0000197!5.60e-07!6;CL:0000098!5.60e-07!6;CL:0002167!5.60e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000333;1.89e-36;5!CL:0002321;1.18e-12;15!CL:0000064;7.26e-08;3!CL:0000067;7.26e-08;3!CL:0005012;7.26e-08;3!CL:0002304;7.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,2.87e-08,59;CL:0000064,8.29e-08,3;CL:0000067,8.29e-08,3;CL:0005012,8.29e-08,3;CL:0002304,8.29e-08,3;CL:0000333,8.59e-08,41;CL:0000221,8.03e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0003056;5.73e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;1.60e-30;6!DOID:171;1.24e-18;10!DOID:3095;7.92e-09;22!DOID:2994;7.92e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.25e-30,6;DOID:171,1.07e-18,10;DOID:3095,7.41e-09,22;DOID:2994,7.41e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0003076!1.91e-17!15;UBERON:0003057!1.91e-17!15;UBERON:0004733!5.48e-15!12;UBERON:0002028!5.48e-15!12;UBERON:0007277!5.48e-15!12;UBERON:0003075!6.07e-14!86;UBERON:0007284!6.07e-14!86;UBERON:0004732!1.09e-13!13;UBERON:0007625!4.57e-13!11;UBERON:0002346!5.24e-13!90;UBERON:0000033!5.60e-12!123;UBERON:0000153!5.87e-12!129;UBERON:0007811!5.87e-12!129;UBERON:0000073!3.95e-11!94;UBERON:0001016!3.95e-11!94;UBERON:0004121!5.74e-11!169;UBERON:0002298!1.01e-10!8;UBERON:0000970!1.29e-10!20;UBERON:0000488!1.32e-10!4;UBERON:0000924!1.69e-10!173;UBERON:0006601!1.69e-10!173;UBERON:0002104!5.26e-10!21;UBERON:0001456!7.42e-10!21;UBERON:0002680!3.04e-09!9;UBERON:0001895!3.04e-09!9;UBERON:0010092!3.04e-09!9;UBERON:0000019!5.83e-09!19;UBERON:0000047!5.83e-09!19;UBERON:0004088!5.83e-09!19;UBERON:0003072!5.83e-09!19;UBERON:0003071!5.83e-09!19;UBERON:0004128!5.83e-09!19;UBERON:0000020!6.03e-09!23;UBERON:0001778!9.86e-09!3;UBERON:0001775!9.86e-09!3;UBERON:0001032!1.75e-08!24;UBERON:0004456!1.75e-08!24;UBERON:0005743!1.94e-08!86;UBERON:0000988!3.43e-08!3;UBERON:0001896!4.71e-08!3;UBERON:0005290!4.71e-08!3;UBERON:0010096!4.71e-08!3;UBERON:0001444!8.47e-08!48;UBERON:0000475!1.11e-07!365;UBERON:0001049!1.16e-07!57;UBERON:0005068!1.16e-07!57;UBERON:0006241!1.16e-07!57;UBERON:0007135!1.16e-07!57;UBERON:0000063!3.18e-07!97;UBERON:0002203!4.86e-07!6;UBERON:0001768!4.86e-07!6 | |ontology_enrichment_uberon=UBERON:0003076!1.91e-17!15;UBERON:0003057!1.91e-17!15;UBERON:0004733!5.48e-15!12;UBERON:0002028!5.48e-15!12;UBERON:0007277!5.48e-15!12;UBERON:0003075!6.07e-14!86;UBERON:0007284!6.07e-14!86;UBERON:0004732!1.09e-13!13;UBERON:0007625!4.57e-13!11;UBERON:0002346!5.24e-13!90;UBERON:0000033!5.60e-12!123;UBERON:0000153!5.87e-12!129;UBERON:0007811!5.87e-12!129;UBERON:0000073!3.95e-11!94;UBERON:0001016!3.95e-11!94;UBERON:0004121!5.74e-11!169;UBERON:0002298!1.01e-10!8;UBERON:0000970!1.29e-10!20;UBERON:0000488!1.32e-10!4;UBERON:0000924!1.69e-10!173;UBERON:0006601!1.69e-10!173;UBERON:0002104!5.26e-10!21;UBERON:0001456!7.42e-10!21;UBERON:0002680!3.04e-09!9;UBERON:0001895!3.04e-09!9;UBERON:0010092!3.04e-09!9;UBERON:0000019!5.83e-09!19;UBERON:0000047!5.83e-09!19;UBERON:0004088!5.83e-09!19;UBERON:0003072!5.83e-09!19;UBERON:0003071!5.83e-09!19;UBERON:0004128!5.83e-09!19;UBERON:0000020!6.03e-09!23;UBERON:0001778!9.86e-09!3;UBERON:0001775!9.86e-09!3;UBERON:0001032!1.75e-08!24;UBERON:0004456!1.75e-08!24;UBERON:0005743!1.94e-08!86;UBERON:0000988!3.43e-08!3;UBERON:0001896!4.71e-08!3;UBERON:0005290!4.71e-08!3;UBERON:0010096!4.71e-08!3;UBERON:0001444!8.47e-08!48;UBERON:0000475!1.11e-07!365;UBERON:0001049!1.16e-07!57;UBERON:0005068!1.16e-07!57;UBERON:0006241!1.16e-07!57;UBERON:0007135!1.16e-07!57;UBERON:0000063!3.18e-07!97;UBERON:0002203!4.86e-07!6;UBERON:0001768!4.86e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.89e-36;5!UBERON:0002410;1.89e-36;5!UBERON:0000010;1.28e-20;8!UBERON:0002148;3.70e-11;2!UBERON:0006331;3.70e-11;2!UBERON:0009662;3.70e-11;2!UBERON:0000970;1.32e-09;20!UBERON:0002104;3.54e-09;21!UBERON:0000020;1.98e-08;23!UBERON:0001032;4.20e-08;24!UBERON:0004456;4.20e-08;24!UBERON:0000988;7.26e-08;3!UBERON:0001778;7.26e-08;3!UBERON:0001775;7.26e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.39e-36,5;UBERON:0002410,1.39e-36,5;UBERON:0000010,1.09e-20,8;UBERON:0002148,4.09e-11,2;UBERON:0006331,4.09e-11,2;UBERON:0009662,4.09e-11,2;UBERON:0000970,3.85e-09,21;UBERON:0002104,3.85e-09,21;UBERON:0000020,4.52e-08,24;UBERON:0001032,4.52e-08,24;UBERON:0004456,4.52e-08,24;UBERON:0000988,7.76e-08,3;UBERON:0001778,8.29e-08,3;UBERON:0001775,8.29e-08,3;UBERON:0001016,1.11e-07,89;UBERON:0004121,6.74e-07,171;UBERON:0000924,6.74e-07,171;UBERON:0006601,6.74e-07,171 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,1.13441780596881,0.665188192387692,0.527008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.206651562351531,0,0.247266929278557,0,0,0.336672227908132,0,0,0.438977620880838,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0,0.68205903612839,0,0.460249493211497,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.713715955188647,0.315404830067869,0.35142424497814,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0.248107807818777,0.460385919864187,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.976135183992909,0,0,0,0,0,0,0,0.154048617114644,0,0,0.214840489736547,0,0,0,0,0,0,0,0.464845549297286,0.31481234683064,0.6970372701606,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.933118762985422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0.234264445725339,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.19755703795225,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16354660725395,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.310482014706917,1.38348634936231,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.56892287734466,1.94084660514027,0,5.4604819096007,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475788130837822,0.0657727735628491,0,0,0,0,0,0,0,0,4.14563956224607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39762066981717,0,0,0.218559560503957,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0,0.865253124247578,0,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0.103432995861895,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,1.13441780596881,0.665188192387692,0.527008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.206651562351531,0,0.247266929278557,0,0,0.336672227908132,0,0,0.438977620880838,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0,0.68205903612839,0,0.460249493211497,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.713715955188647,0.315404830067869,0.35142424497814,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0.248107807818777,0.460385919864187,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.976135183992909,0,0,0,0,0,0,0,0.154048617114644,0,0,0.214840489736547,0,0,0,0,0,0,0,0.464845549297286,0.31481234683064,0.6970372701606,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.933118762985422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0.234264445725339,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.19755703795225,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16354660725395,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.310482014706917,1.38348634936231,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.56892287734466,1.94084660514027,0,5.4604819096007,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475788130837822,0.0657727735628491,0,0,0,0,0,0,0,0,4.14563956224607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39762066981717,0,0,0.218559560503957,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0,0.865253124247578,0,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0.103432995861895,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr13:36046061..36046077,+ | |short_description=p@chr13:36046061..36046077,+ | ||
}} | }} |
Latest revision as of 15:45, 24 July 2015
Short description: | p@chr13:36046061..36046077, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:36046061..36046077, + |
Coexpression cluster: | C699_medulloblastoma_Lens_neuroblastoma_Ciliary_eye_small_cerebellum |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 2.87e-08 | 59 |
ciliated cell | 8.29e-08 | 3 |
ciliated epithelial cell | 8.29e-08 | 3 |
multi-ciliated epithelial cell | 8.29e-08 | 3 |
non-pigmented ciliary epithelial cell | 8.29e-08 | 3 |
migratory neural crest cell | 8.59e-08 | 41 |
ectodermal cell | 8.03e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.39e-36 | 5 |
autonomic nervous system | 1.39e-36 | 5 |
peripheral nervous system | 1.09e-20 | 8 |
locus ceruleus | 4.09e-11 | 2 |
brainstem nucleus | 4.09e-11 | 2 |
hindbrain nucleus | 4.09e-11 | 2 |
eye | 3.85e-09 | 21 |
visual system | 3.85e-09 | 21 |
sense organ | 4.52e-08 | 24 |
sensory system | 4.52e-08 | 24 |
entire sense organ system | 4.52e-08 | 24 |
pons | 7.76e-08 | 3 |
ciliary epithelium | 8.29e-08 | 3 |
ciliary body | 8.29e-08 | 3 |
nervous system | 1.11e-07 | 89 |
ectoderm-derived structure | 6.74e-07 | 171 |
ectoderm | 6.74e-07 | 171 |
presumptive ectoderm | 6.74e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.25e-30 | 6 |
neuroectodermal tumor | 1.07e-18 | 10 |
germ cell and embryonal cancer | 7.41e-09 | 22 |
germ cell cancer | 7.41e-09 | 22 |