FFCP PHASE1:Hg19::chr18:7117813..7117843,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284217 | |EntrezGene=284217 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6481 | |HGNC=6481 | ||
|TSSclassifier=strong | |||
|UniProt=P25391 | |UniProt=P25391 | ||
|association_with_transcript=0bp_to_ENST00000389658,NM_005559,uc002knm.2,uc010wzj.1_5end | |association_with_transcript=0bp_to_ENST00000389658,NM_005559,uc002knm.2,uc010wzj.1_5end | ||
|cluster_id=chr18:7117813..7117843,- | |||
|coexpression_cluster_id=C3739 | |||
|description=CAGE_peak_2_at_LAMA1_5end | |description=CAGE_peak_2_at_LAMA1_5end | ||
|id=chr18:7117813..7117843,- | |id=chr18:7117813..7117843,- | ||
|ontology_enrichment_celltype=CL:0000055!6.46e-15!180;CL:0000221!2.27e-10!71;CL:0000133!1.26e-09!59;CL:0000147!5.02e-08!14;CL:0000333!6.76e-07!41 | |ontology_enrichment_celltype=CL:0000055!6.46e-15!180;CL:0000221!2.27e-10!71;CL:0000133!1.26e-09!59;CL:0000147!5.02e-08!14;CL:0000333!6.76e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.11e-09;14!CL:0000148;8.96e-09;10!CL:0000039;1.91e-08;7!CL:0000586;1.91e-08;7!CL:0002319;2.78e-08;25!CL:0002321;2.95e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,7.86e-11,59;CL:0000147,7.27e-10,14;CL:0000221,8.17e-09,72;CL:0000148,9.16e-09,10;CL:0000541,9.16e-09,10;CL:0000333,1.58e-08,41;CL:0000039,1.67e-08,7;CL:0000586,1.67e-08,7;CL:0002319,2.43e-08,25;CL:0002321,4.03e-08,250;CL:0000047,2.54e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.68e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.19e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.35e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.77e-18!94;UBERON:0001016!2.77e-18!94;UBERON:0005743!3.37e-18!86;UBERON:0004121!3.61e-18!169;UBERON:0000475!3.08e-17!365;UBERON:0001017!5.69e-17!82;UBERON:0000924!8.46e-17!173;UBERON:0006601!8.46e-17!173;UBERON:0000033!1.50e-15!123;UBERON:0000119!2.93e-15!312;UBERON:0003075!1.01e-14!86;UBERON:0007284!1.01e-14!86;UBERON:0000153!1.91e-14!129;UBERON:0007811!1.91e-14!129;UBERON:0000483!3.86e-14!309;UBERON:0002346!5.77e-13!90;UBERON:0000955!1.31e-12!69;UBERON:0006238!1.31e-12!69;UBERON:0002616!6.46e-12!59;UBERON:0003056!6.90e-12!61;UBERON:0001049!1.71e-10!57;UBERON:0005068!1.71e-10!57;UBERON:0006241!1.71e-10!57;UBERON:0007135!1.71e-10!57;UBERON:0000481!1.88e-10!347;UBERON:0000922!2.51e-08!612;UBERON:0003080!1.25e-07!42;UBERON:0002780!1.71e-07!41;UBERON:0001890!1.71e-07!41;UBERON:0006240!1.71e-07!41;UBERON:0000991!2.98e-07!21;UBERON:0009196!2.98e-07!21;UBERON:0009117!2.98e-07!21;UBERON:0005564!2.98e-07!21;UBERON:0000468!3.95e-07!659;UBERON:0000486!7.44e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000991;3.91e-10;21!UBERON:0000992;3.00e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000991,2.26e-10,21;UBERON:0009196,2.26e-10,21;UBERON:0009117,2.26e-10,21;UBERON:0005564,2.26e-10,21;UBERON:0004176,1.16e-09,22;UBERON:0000119,1.45e-07,309;UBERON:0000992,1.93e-07,13;UBERON:0004121,5.27e-07,171;UBERON:0000924,5.27e-07,171;UBERON:0006601,5.27e-07,171 | |||
|phase1_expression=1.63510541343501,0.642301571672949,0.422863212287913,1.0007329835313,0.446961094427288,0,0,1.26343974685366,0,0,0,0,0,0.990130823680373,1.98838425436749,0,0,0.730310090387373,0,1.23121058076788,0.204000691244253,1.56727360739044,6.29719171688325,4.24310717725941,3.38965126905968,0,0.164201178899891,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,5.75381528295886,0.361439152384566,0,0,0,0,1.22895262313288,0.443458794925128,0.614843499851882,0.982343066232845,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,2.51577443545116,1.43418310374407,0.354668382198357,0.560677600142307,0,0,6.22422070799533,1.75123873690594,3.92308567472301,6.20565453344219,1.72852777344,0.937285727335186,3.1216007683032,1.1409436430889,1.19558944441441,0.469737994575059,0.647491777472526,0.140450806702248,0.816616685019573,0.61417158655884,0.723280468230358,0,1.7308685049499,0.910161361938026,0.718618141816238,0.168336113954066,0.375355559615893,0.277064115484183,0,0.30648779579902,4.5071417671979,1.58805056424029,0,0,0,0,0.103052529238439,0.515281080091258,0.18611685633159,0,0,0,0,0.646584227275248,0,0,0.508681776931463,0,0.818238361772504,1.72082757233402,5.61079048196139,6.22889911110981,3.48581828608555,4.97573064073778,3.28017106138317,6.20461510428911,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,2.057870056657,1.47008711385542,0,0,0,0,0,1.71567810298526,0.548751427043128,0,0,0.740707561268237,0.977424915930974,0,0,2.31860809950154,5.75302601755526,0,0,0,0,0,0,0,0,0.93733833986777,1.00789276919316,0.283550194484773,3.67189943081678,1.45316969256981,4.98397482914775,0,0,0,0,0,1.14296209725904,6.49380323449072,1.17217447210047,1.71072446022705,3.70178973731965,5.1058319833466,1.71495859578347,4.70950554250515,10.4630416519987,2.42016343209135,6.46358578788889,7.15312891703765,3.381211010224,6.91439103120663,1.04007436911366,0,0,0.266422179016099,0.714889968290738,0,0,4.23457039581856,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,1.42636905040718,2.17171960001369,1.2328579353023,1.25342674267927,0,0,0,0,2.7950408664471,2.60279707715243,1.54657762555539,1.50764638800914,1.27587750330633,0,0,0,0.36807447515742,2.00068208423871,0.813795071099207,0.207970861530807,0,0,0.117141414992713,0.902838299183157,0,1.03473071292505,0,0,0.347534457872331,0.783204629850962,0.343143423810856,0,0,0,0,0,0.30239029332968,0.992431231275107,1.84154367945675,1.96462066103151,1.79394808957981,3.58195074346692,1.12597744800525,1.48418066444991,1.85051632563187,0.710246901252508,0.328508624055237,2.07701771673448,0.581051892299796,0,1.60405176242628,1.28913384510255,0.229628896329213,0.364182336013434,2.88473712910733,4.51199612907412,4.6979355633693,3.13739907670742,0,2.84989398010764,0,0,0.215915916102139,0,1.08378575017541,1.00337954770971,1.52925763827023,2.49322802678617,0,0,0.261435451024901,2.82095137628028,3.93617574839647,0.976135183992909,0.103041011647722,0,0,1.14853107599234,0.650060246036521,0,0.096670718292122,3.08097234229289,2.6095624703442,4.13509717453592,2.14840489736547,3.91545073568417,3.40906509664404,0.534192213880424,0,0,0,0,0,0.62962469366128,0,0,2.66153015158511,0,0,0.286249773483982,5.21021717103534,7.59310619324942,3.0500831027812,1.535386747868,0,0,0,3.05783177891635,3.56898138656871,2.47406044925942,0.202182481573316,0,1.68503382495592,0.48763373908959,0.243713489631284,0,2.45699840534374,0.989838023675989,1.13008116620243,0,0,0,0.578775534266688,1.9676842561399,0.202910376962704,0,0,0.860468113224309,0.0982490410131212,0.7133421029625,4.25713276884717,0.633322905892992,0,3.41525856389144,3.84928192269481,0,0,1.08890984861323,0.282431402330337,0.86101074534246,3.36942951335251,0.886860307073351,4.59446800413919,0,0,0,0,0,0,0,0,0,1.92495971052672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,1.9882952955326,0.984685914873589,0,0,0,0.398495976502139,0,0,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0.969332746095218,0.185536196323703,1.99613798001194,0,0,0.724999575434793,0.796554137998498,0,0.236387681767936,1.37897349296586,0,0.173624994933292,0.885741385813839,0.60298219312704,1.52581736317083,0.110579259931225,0.886642856860642,0.219385397153973,0,0,0,0,34.584585658209,25.5809286567851,17.7095216232873,0,0.824378340616761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.889563386041866,0.494255755786011,0.522109747527277,1.21322039365219,0.802577647298789,0.937057782901357,0,0,0,0,1.20990716048664,1.83643656978294,0.126373159256976,0.150323419414493,0.622129148383483,0,0,0.313932918407225,0,3.69992409838731,0,0,0,0,0.17472666824203,0,0.290268993867255,0.365446585430928,0,0.0969890164884194,0,0.451961481561065,1.23337732182076,0.39742922340597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| ||
|short_description=p2@LAMA1 | |short_description=p2@LAMA1 | ||
}} | }} |
Latest revision as of 08:17, 20 September 2015
Short description: | p2@LAMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAMA1_5end |
Coexpression cluster: | C3739_choriocarcinoma_large_melanoma_pancreatic_mesenchymal_Meningeal_Melanocyte |
Association with transcript: | 0bp_to_ENST00000389658, NM_005559, uc002knm.2, uc010wzj.1_5end |
EntrezGene: | LAMA1 |
HGNC: | 6481 |
UniProt: | P25391 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 7.86e-11 | 59 |
pigment cell | 7.27e-10 | 14 |
ectodermal cell | 8.17e-09 | 72 |
melanocyte | 9.16e-09 | 10 |
melanoblast | 9.16e-09 | 10 |
migratory neural crest cell | 1.58e-08 | 41 |
germ line cell | 1.67e-08 | 7 |
germ cell | 1.67e-08 | 7 |
neural cell | 2.43e-08 | 25 |
embryonic cell | 4.03e-08 | 250 |
neuronal stem cell | 2.54e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
gonad | 2.26e-10 | 21 |
indifferent external genitalia | 2.26e-10 | 21 |
indifferent gonad | 2.26e-10 | 21 |
gonad primordium | 2.26e-10 | 21 |
external genitalia | 1.16e-09 | 22 |
cell layer | 1.45e-07 | 309 |
female gonad | 1.93e-07 | 13 |
ectoderm-derived structure | 5.27e-07 | 171 |
ectoderm | 5.27e-07 | 171 |
presumptive ectoderm | 5.27e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.35e-09 | 14 |