FFCP PHASE1:Hg19::chr18:60825483..60825499,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:60825483..60825499,- | |||
|coexpression_cluster_id=C342 | |||
|description=CAGE_peak_at_chr18:60825483..60825499,- | |description=CAGE_peak_at_chr18:60825483..60825499,- | ||
|id=chr18:60825483..60825499,- | |id=chr18:60825483..60825499,- | ||
|ontology_enrichment_celltype=CL:0000542!5.62e-42!53;CL:0000051!5.62e-42!53;CL:0000838!1.04e-39!52;CL:0000791!3.76e-26!18;CL:0000789!3.76e-26!18;CL:0002420!3.76e-26!18;CL:0002419!3.76e-26!18;CL:0000790!3.76e-26!18;CL:0000084!1.23e-24!25;CL:0000827!1.23e-24!25;CL:0000945!6.85e-19!24;CL:0000826!6.85e-19!24;CL:0002087!6.69e-16!119;CL:0000625!2.77e-15!11;CL:0000738!8.17e-15!140;CL:0000624!1.07e-14!6;CL:0002031!1.36e-12!124;CL:0000037!9.98e-11!172;CL:0000566!9.98e-11!172;CL:0000988!1.20e-10!182;CL:0002032!1.50e-10!165;CL:0000837!1.50e-10!165;CL:0000815!1.85e-08!2;CL:0000792!1.85e-08!2;CL:0002677!1.85e-08!2 | |ontology_enrichment_celltype=CL:0000542!5.62e-42!53;CL:0000051!5.62e-42!53;CL:0000838!1.04e-39!52;CL:0000791!3.76e-26!18;CL:0000789!3.76e-26!18;CL:0002420!3.76e-26!18;CL:0002419!3.76e-26!18;CL:0000790!3.76e-26!18;CL:0000084!1.23e-24!25;CL:0000827!1.23e-24!25;CL:0000945!6.85e-19!24;CL:0000826!6.85e-19!24;CL:0002087!6.69e-16!119;CL:0000625!2.77e-15!11;CL:0000738!8.17e-15!140;CL:0000624!1.07e-14!6;CL:0002031!1.36e-12!124;CL:0000037!9.98e-11!172;CL:0000566!9.98e-11!172;CL:0000988!1.20e-10!182;CL:0002032!1.50e-10!165;CL:0000837!1.50e-10!165;CL:0000815!1.85e-08!2;CL:0000792!1.85e-08!2;CL:0002677!1.85e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.09e-24;24!CL:0000542;7.88e-12;53!CL:0000815;1.51e-09;2!CL:0000792;1.51e-09;2!CL:0002677;1.51e-09;2!CL:0000791;7.76e-09;18!CL:0000789;7.76e-09;18!CL:0002419;7.76e-09;18!CL:0000625;6.54e-07;11!CL:0000898;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.62e-25,52;CL:0000945,1.00e-24,24;CL:0000826,1.00e-24,24;CL:0000542,1.41e-24,53;CL:0000051,1.41e-24,53;CL:0002087,7.14e-11,115;CL:0002031,2.16e-10,120;CL:0000815,1.86e-09,2;CL:0000792,1.86e-09,2;CL:0002677,1.86e-09,2;CL:0000738,4.34e-09,136;CL:0000791,7.65e-09,18;CL:0000789,7.65e-09,18;CL:0002420,7.65e-09,18;CL:0002419,7.65e-09,18;CL:0000790,7.65e-09,18;CL:0002032,1.46e-07,161;CL:0000837,1.46e-07,161;CL:0000037,3.26e-07,168;CL:0000625,5.98e-07,11;CL:0000988,8.32e-07,177 | |||
|ontology_enrichment_development_v019=UBERON:0005425;9.48e-18;1!CL:0000051;7.88e-12;53!CL:0000790;7.76e-09;18!UBERON:0003056;8.86e-07;3 | |||
|ontology_enrichment_disease=DOID:0060058!1.54e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:630;2.90e-18;1!DOID:0050177;2.90e-18;1!DOID:0050427;2.90e-18;1!DOID:0060058;1.29e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.66e-18,1;DOID:0050177,2.66e-18,1;DOID:0050427,2.66e-18,1;DOID:0060058,1.29e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0005162!6.90e-08!2;UBERON:0000122!6.90e-08!2;UBERON:0000178!9.90e-08!15;UBERON:0000179!9.90e-08!15;UBERON:0000463!9.90e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.48e-18;1!UBERON:0001785;9.48e-18;1!UBERON:0002464;9.48e-18;1!UBERON:0004904;9.48e-18;1!UBERON:0001021;9.48e-18;1!UBERON:0003714;1.51e-09;2!UBERON:0005162;1.51e-09;2!UBERON:0000122;1.51e-09;2!UBERON:0002106;5.97e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,7.37e-18,1;UBERON:0001785,7.37e-18,1;UBERON:0002464,7.37e-18,1;UBERON:0004904,7.37e-18,1;UBERON:0001021,7.37e-18,1;UBERON:0003902,7.37e-18,1;UBERON:0005425,7.37e-18,1;UBERON:0003714,1.33e-09,2;UBERON:0005162,1.33e-09,2;UBERON:0000122,1.33e-09,2;UBERON:0002106,6.14e-07,3;UBERON:0004854,6.14e-07,3;UBERON:0009034,6.14e-07,3;UBERON:0002095,6.14e-07,3;UBERON:0004782,6.14e-07,3;UBERON:0003281,6.14e-07,3;UBERON:0009664,6.14e-07,3;UBERON:0002296,6.14e-07,3;UBERON:0005602,6.14e-07,3;UBERON:0001179,6.14e-07,3;UBERON:0006293,6.14e-07,3 | |||
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| ||
|short_description=p@chr18:60825483..60825499,- | |short_description=p@chr18:60825483..60825499,- | ||
}} | }} |
Latest revision as of 01:48, 26 July 2015
Short description: | p@chr18:60825483..60825499, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:60825483..60825499, - |
Coexpression cluster: | C342_xeroderma_b_B_splenic_plasma_Burkitt_thymus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.62e-25 | 52 |
lymphocyte of B lineage | 1.00e-24 | 24 |
pro-B cell | 1.00e-24 | 24 |
lymphocyte | 1.41e-24 | 53 |
common lymphoid progenitor | 1.41e-24 | 53 |
nongranular leukocyte | 7.14e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 2.16e-10 | 120 |
regulatory T cell | 1.86e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.86e-09 | 2 |
naive regulatory T cell | 1.86e-09 | 2 |
leukocyte | 4.34e-09 | 136 |
mature alpha-beta T cell | 7.65e-09 | 18 |
alpha-beta T cell | 7.65e-09 | 18 |
immature T cell | 7.65e-09 | 18 |
mature T cell | 7.65e-09 | 18 |
immature alpha-beta T cell | 7.65e-09 | 18 |
hematopoietic oligopotent progenitor cell | 1.46e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.46e-07 | 161 |
hematopoietic stem cell | 3.26e-07 | 168 |
CD8-positive, alpha-beta T cell | 5.98e-07 | 11 |
hematopoietic cell | 8.32e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 7.37e-18 | 1 |
cranial nerve | 7.37e-18 | 1 |
nerve trunk | 7.37e-18 | 1 |
nerve connecting eye with brain | 7.37e-18 | 1 |
nerve | 7.37e-18 | 1 |
retinal neural layer | 7.37e-18 | 1 |
presumptive neural retina | 7.37e-18 | 1 |
neural tissue | 1.33e-09 | 2 |
multi cell component structure | 1.33e-09 | 2 |
neuron projection bundle | 1.33e-09 | 2 |
spleen | 6.14e-07 | 3 |
gastrointestinal system mesentery | 6.14e-07 | 3 |
stomach region | 6.14e-07 | 3 |
mesentery | 6.14e-07 | 3 |
gastrointestinal system serosa | 6.14e-07 | 3 |
mesentery of stomach | 6.14e-07 | 3 |
gut mesentery | 6.14e-07 | 3 |
dorsal mesentery | 6.14e-07 | 3 |
dorsal mesogastrium | 6.14e-07 | 3 |
peritoneal cavity | 6.14e-07 | 3 |
spleen primordium | 6.14e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.66e-18 | 1 |
monogenic disease | 2.66e-18 | 1 |
xeroderma pigmentosum | 2.66e-18 | 1 |
lymphoma | 1.29e-07 | 10 |