FFCP PHASE1:Hg19::chr12:89991814..89991817,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:89991814..89991817,- | |||
|coexpression_cluster_id=C621 | |||
|description=CAGE_peak_at_chr12:89991814..89991817,- | |description=CAGE_peak_at_chr12:89991814..89991817,- | ||
|id=chr12:89991814..89991817,- | |id=chr12:89991814..89991817,- | ||
|ontology_enrichment_celltype=CL:0000738!2.70e-32!140;CL:0002087!1.84e-30!119;CL:0000037!9.72e-27!172;CL:0000566!9.72e-27!172;CL:0002031!2.25e-25!124;CL:0002032!6.72e-25!165;CL:0000837!6.72e-25!165;CL:0000988!1.16e-23!182;CL:0002057!1.41e-20!42;CL:0000860!2.25e-20!45;CL:0002009!2.83e-17!65;CL:0000766!3.76e-17!76;CL:0002194!1.59e-16!63;CL:0000576!1.59e-16!63;CL:0000040!1.59e-16!63;CL:0000559!1.59e-16!63;CL:0000557!1.31e-14!71;CL:0000763!6.18e-13!112;CL:0000049!6.18e-13!112;CL:0000839!8.06e-13!70;CL:0000542!3.46e-12!53;CL:0000051!3.46e-12!53;CL:0000838!5.18e-12!52 | |ontology_enrichment_celltype=CL:0000738!2.70e-32!140;CL:0002087!1.84e-30!119;CL:0000037!9.72e-27!172;CL:0000566!9.72e-27!172;CL:0002031!2.25e-25!124;CL:0002032!6.72e-25!165;CL:0000837!6.72e-25!165;CL:0000988!1.16e-23!182;CL:0002057!1.41e-20!42;CL:0000860!2.25e-20!45;CL:0002009!2.83e-17!65;CL:0000766!3.76e-17!76;CL:0002194!1.59e-16!63;CL:0000576!1.59e-16!63;CL:0000040!1.59e-16!63;CL:0000559!1.59e-16!63;CL:0000557!1.31e-14!71;CL:0000763!6.18e-13!112;CL:0000049!6.18e-13!112;CL:0000839!8.06e-13!70;CL:0000542!3.46e-12!53;CL:0000051!3.46e-12!53;CL:0000838!5.18e-12!52 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.97e-20;33!CL:0002057;6.97e-20;33!CL:0000576;6.16e-14;48!CL:0000473;9.27e-13;39!CL:0000234;9.27e-13;39!CL:0002087;1.20e-11;104!CL:0000236;3.70e-11;13!CL:0000766;1.69e-09;69!CL:0000542;6.29e-08;53!CL:0000094;1.13e-07;8!CL:0000738;1.18e-07;136!CL:0000945;2.19e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.57e-32,136;CL:0002087,1.20e-29,115;CL:0002031,5.90e-25,120;CL:0000860,7.38e-25,42;CL:0002057,7.38e-25,42;CL:0000037,1.50e-22,168;CL:0000473,3.09e-20,48;CL:0000234,3.09e-20,48;CL:0000988,3.72e-20,177;CL:0002032,5.41e-20,161;CL:0000837,5.41e-20,161;CL:0000766,1.07e-18,72;CL:0002009,4.45e-16,61;CL:0002194,9.10e-16,59;CL:0000576,9.10e-16,59;CL:0000040,9.10e-16,59;CL:0000559,9.10e-16,59;CL:0000557,1.77e-14,67;CL:0000839,6.35e-13,66;CL:0000838,6.55e-12,52;CL:0000542,1.63e-11,53;CL:0000051,1.63e-11,53;CL:0000236,3.58e-10,14;CL:0000763,1.84e-09,108;CL:0000049,1.84e-09,108;CL:0000094,8.58e-08,8;CL:0000945,2.35e-07,24;CL:0000826,2.35e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.99e-18;42!CL:0000051;6.29e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.07e-15!102;UBERON:0003061!1.07e-15!102;UBERON:0002371!4.31e-14!80;UBERON:0001049!4.73e-14!57;UBERON:0005068!4.73e-14!57;UBERON:0006241!4.73e-14!57;UBERON:0007135!4.73e-14!57;UBERON:0001474!2.98e-13!86;UBERON:0003080!5.15e-13!42;UBERON:0002780!7.32e-13!41;UBERON:0001890!7.32e-13!41;UBERON:0006240!7.32e-13!41;UBERON:0002193!1.44e-12!112;UBERON:0002020!6.41e-12!34;UBERON:0003528!6.41e-12!34;UBERON:0002616!1.20e-11!59;UBERON:0001893!2.94e-11!34;UBERON:0001869!3.19e-11!32;UBERON:0002791!5.24e-11!33;UBERON:0002619!1.04e-09!22;UBERON:0000955!1.65e-09!69;UBERON:0006238!1.65e-09!69;UBERON:0004765!1.75e-09!101;UBERON:0001434!1.75e-09!101;UBERON:0007023!7.26e-09!115;UBERON:0001950!1.03e-08!20;UBERON:0002405!1.14e-08!115;UBERON:0000956!1.41e-08!25;UBERON:0000203!1.41e-08!25;UBERON:0001017!1.88e-08!82;UBERON:0000073!3.46e-08!94;UBERON:0001016!3.46e-08!94;UBERON:0005743!1.70e-07!86 | |ontology_enrichment_uberon=UBERON:0002390!1.07e-15!102;UBERON:0003061!1.07e-15!102;UBERON:0002371!4.31e-14!80;UBERON:0001049!4.73e-14!57;UBERON:0005068!4.73e-14!57;UBERON:0006241!4.73e-14!57;UBERON:0007135!4.73e-14!57;UBERON:0001474!2.98e-13!86;UBERON:0003080!5.15e-13!42;UBERON:0002780!7.32e-13!41;UBERON:0001890!7.32e-13!41;UBERON:0006240!7.32e-13!41;UBERON:0002193!1.44e-12!112;UBERON:0002020!6.41e-12!34;UBERON:0003528!6.41e-12!34;UBERON:0002616!1.20e-11!59;UBERON:0001893!2.94e-11!34;UBERON:0001869!3.19e-11!32;UBERON:0002791!5.24e-11!33;UBERON:0002619!1.04e-09!22;UBERON:0000955!1.65e-09!69;UBERON:0006238!1.65e-09!69;UBERON:0004765!1.75e-09!101;UBERON:0001434!1.75e-09!101;UBERON:0007023!7.26e-09!115;UBERON:0001950!1.03e-08!20;UBERON:0002405!1.14e-08!115;UBERON:0000956!1.41e-08!25;UBERON:0000203!1.41e-08!25;UBERON:0001017!1.88e-08!82;UBERON:0000073!3.46e-08!94;UBERON:0001016!3.46e-08!94;UBERON:0005743!1.70e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0002791;3.50e-14;32!UBERON:0002619;7.87e-14;22!UBERON:0001869;1.02e-13;32!UBERON:0002780;1.54e-13;41!UBERON:0001890;1.54e-13;41!UBERON:0003528;8.34e-13;34!UBERON:0002020;8.34e-13;34!UBERON:0001893;1.05e-12;34!UBERON:0001950;4.02e-12;20!UBERON:0000956;1.52e-11;25!UBERON:0000203;1.52e-11;25!UBERON:0000073;2.20e-10;53!UBERON:0002616;2.20e-10;53 | |||
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| ||
|short_description=p@chr12:89991814..89991817,- | |short_description=p@chr12:89991814..89991817,- | ||
}} | }} |
Latest revision as of 13:18, 24 July 2015
Short description: | p@chr12:89991814..89991817, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:89991814..89991817, - |
Coexpression cluster: | C621_Neutrophils_CD14_CD4_CD8_Natural_CD19_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 8.57e-32 | 136 |
nongranular leukocyte | 1.20e-29 | 115 |
hematopoietic lineage restricted progenitor cell | 5.90e-25 | 120 |
classical monocyte | 7.38e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.38e-25 | 42 |
hematopoietic stem cell | 1.50e-22 | 168 |
defensive cell | 3.09e-20 | 48 |
phagocyte | 3.09e-20 | 48 |
hematopoietic cell | 3.72e-20 | 177 |
hematopoietic oligopotent progenitor cell | 5.41e-20 | 161 |
hematopoietic multipotent progenitor cell | 5.41e-20 | 161 |
myeloid leukocyte | 1.07e-18 | 72 |
macrophage dendritic cell progenitor | 4.45e-16 | 61 |
monopoietic cell | 9.10e-16 | 59 |
monocyte | 9.10e-16 | 59 |
monoblast | 9.10e-16 | 59 |
promonocyte | 9.10e-16 | 59 |
granulocyte monocyte progenitor cell | 1.77e-14 | 67 |
myeloid lineage restricted progenitor cell | 6.35e-13 | 66 |
lymphoid lineage restricted progenitor cell | 6.55e-12 | 52 |
lymphocyte | 1.63e-11 | 53 |
common lymphoid progenitor | 1.63e-11 | 53 |
B cell | 3.58e-10 | 14 |
myeloid cell | 1.84e-09 | 108 |
common myeloid progenitor | 1.84e-09 | 108 |
granulocyte | 8.58e-08 | 8 |
lymphocyte of B lineage | 2.35e-07 | 24 |
pro-B cell | 2.35e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 3.44e-18 | 41 |
forebrain | 3.44e-18 | 41 |
anterior neural tube | 3.44e-18 | 41 |
future forebrain | 3.44e-18 | 41 |
neural tube | 3.63e-18 | 56 |
neural rod | 3.63e-18 | 56 |
future spinal cord | 3.63e-18 | 56 |
neural keel | 3.63e-18 | 56 |
regional part of nervous system | 1.15e-17 | 53 |
regional part of brain | 1.15e-17 | 53 |
regional part of telencephalon | 9.27e-16 | 32 |
brain grey matter | 1.24e-15 | 34 |
gray matter | 1.24e-15 | 34 |
telencephalon | 1.66e-15 | 34 |
cerebral hemisphere | 1.92e-15 | 32 |
bone marrow | 8.57e-15 | 76 |
hematopoietic system | 3.43e-14 | 98 |
blood island | 3.43e-14 | 98 |
regional part of cerebral cortex | 4.95e-14 | 22 |
bone element | 8.48e-13 | 82 |
brain | 8.77e-13 | 68 |
future brain | 8.77e-13 | 68 |
neocortex | 2.72e-12 | 20 |
cerebral cortex | 1.02e-11 | 25 |
pallium | 1.02e-11 | 25 |
hemolymphoid system | 1.42e-11 | 108 |
nervous system | 1.54e-11 | 89 |
central nervous system | 4.62e-11 | 81 |
skeletal element | 1.35e-10 | 90 |
immune system | 1.73e-10 | 93 |
skeletal system | 1.12e-09 | 100 |
pre-chordal neural plate | 3.05e-09 | 61 |
neural plate | 6.06e-09 | 82 |
presumptive neural plate | 6.06e-09 | 82 |
neurectoderm | 1.21e-08 | 86 |