FFCP PHASE1:Hg19::chr12:54430878..54430894,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:54430878..54430894,+ | |||
|coexpression_cluster_id=C169 | |||
|description=CAGE_peak_at_chr12:54430878..54430894,+ | |description=CAGE_peak_at_chr12:54430878..54430894,+ | ||
|id=chr12:54430878..54430894,+ | |id=chr12:54430878..54430894,+ | ||
|ontology_enrichment_celltype=CL:0000214!3.21e-12!3;CL:0002580!4.32e-12!3;CL:0002564!9.75e-12!3;CL:0002602!1.67e-08!2;CL:0002334!2.38e-07!12 | |ontology_enrichment_celltype=CL:0000214!3.21e-12!3;CL:0002580!4.32e-12!3;CL:0002564!9.75e-12!3;CL:0002602!1.67e-08!2;CL:0002334!2.38e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000313;1.54e-29;1!CL:0000159;1.66e-15;2!CL:0000214;1.09e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,1.78e-29,1;CL:0000159,1.78e-15,2;CL:0000214,9.90e-11,3 | |||
|ontology_enrichment_development_v019=UBERON:0003918;2.74e-12;10!UBERON:0007687;2.74e-12;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2355;7.48e-30;1!DOID:2152;1.54e-29;1!DOID:74;1.15e-15;2!DOID:1287;1.70e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,7.48e-30,1;DOID:2152,1.78e-29,1;DOID:74,1.15e-15,2;DOID:1287,1.70e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004905!5.31e-19!5;UBERON:0000982!5.31e-19!5;UBERON:0004770!5.31e-19!5;UBERON:0006915!3.21e-12!3;UBERON:0002018!3.21e-12!3;UBERON:0002217!3.21e-12!3;UBERON:0007616!3.21e-12!3;UBERON:0002242!9.75e-12!3;UBERON:0003068!9.75e-12!3;UBERON:0002328!9.75e-12!3;UBERON:0004880!9.75e-12!3;UBERON:0009568!1.67e-08!2;UBERON:0002216!1.67e-08!2;UBERON:0002209!1.67e-08!2;UBERON:0002213!1.67e-08!2;UBERON:0004267!1.67e-08!2;UBERON:0006444!1.67e-08!2;UBERON:0001995!1.67e-08!2;UBERON:0004715!1.67e-08!2;UBERON:0001468!1.67e-08!2;UBERON:0001130!1.67e-08!2;UBERON:0001066!1.67e-08!2;UBERON:0000489!6.31e-08!32;UBERON:0002298!9.90e-08!8;UBERON:0002113!1.27e-07!27;UBERON:0003918!1.27e-07!27;UBERON:0005095!1.27e-07!27;UBERON:0007687!1.27e-07!27;UBERON:0005174!2.03e-07!5;UBERON:0001137!2.03e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;1.54e-29;1!UBERON:0002426;3.16e-29;1!UBERON:0003831;3.16e-29;1!UBERON:0003898;3.16e-29;1!UBERON:0004830;3.16e-29;1!UBERON:0003830;3.16e-29;1!UBERON:0005175;3.16e-29;1!UBERON:0001774;3.16e-29;1!UBERON:0001103;3.16e-29;1!UBERON:0004909;1.66e-15;2!UBERON:0005090;2.37e-15;2!UBERON:0001630;2.37e-15;2!UBERON:0000988;7.42e-11;3!UBERON:0006915;1.09e-10;3!UBERON:0007616;1.09e-10;3!UBERON:0002217;1.09e-10;3!UBERON:0002018;1.09e-10;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,1.78e-29,1;UBERON:0002426,3.16e-29,1;UBERON:0003831,3.16e-29,1;UBERON:0003898,3.16e-29,1;UBERON:0004830,3.16e-29,1;UBERON:0003830,3.16e-29,1;UBERON:0005175,3.16e-29,1;UBERON:0001774,3.16e-29,1;UBERON:0001103,3.16e-29,1;UBERON:0010084,3.16e-29,1;UBERON:0004909,1.78e-15,2;UBERON:0005090,2.37e-15,2;UBERON:0001630,2.37e-15,2;UBERON:0000988,7.42e-11,3;UBERON:0006915,9.90e-11,3;UBERON:0007616,9.90e-11,3;UBERON:0002217,9.90e-11,3;UBERON:0002018,9.90e-11,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0,0.236132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0.308097234229289,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0,2.25485129121739,1.45163467956146,0,0,0,0,0.284609546029793,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.53592655385482,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.869349641179368,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,3.73833531372574,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,2.01339777236026,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0.0771741581079447,0,0,0,0,0.588925401344836,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0.946629373159108,0,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0,0.236132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0.308097234229289,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0,2.25485129121739,1.45163467956146,0,0,0,0,0.284609546029793,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.53592655385482,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.869349641179368,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,3.73833531372574,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,2.01339777236026,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0.0771741581079447,0,0,0,0,0.588925401344836,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0.946629373159108,0,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p@chr12:54430878..54430894,+ | |short_description=p@chr12:54430878..54430894,+ | ||
}} | }} |
Latest revision as of 09:58, 24 July 2015
Short description: | p@chr12:54430878..54430894, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:54430878..54430894, + |
Coexpression cluster: | C169_hereditary_adult_gall_lymphangiectasia_chronic_b_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 1.78e-29 | 1 |
seromucus secreting cell | 1.78e-15 | 2 |
synovial cell | 9.90e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 1.78e-29 | 1 |
chest muscle | 3.16e-29 | 1 |
respiratory system muscle | 3.16e-29 | 1 |
skeletal muscle of trunk | 3.16e-29 | 1 |
respiratory system skeletal muscle | 3.16e-29 | 1 |
thoracic segment muscle | 3.16e-29 | 1 |
chest organ | 3.16e-29 | 1 |
muscle of trunk | 3.16e-29 | 1 |
diaphragm | 3.16e-29 | 1 |
future diaphragm | 3.16e-29 | 1 |
epithelium of gonad | 1.78e-15 | 2 |
muscle structure | 2.37e-15 | 2 |
muscle organ | 2.37e-15 | 2 |
pons | 7.42e-11 | 3 |
stratified squamous epithelium | 9.90e-11 | 3 |
layer of synovial tissue | 9.90e-11 | 3 |
synovial joint | 9.90e-11 | 3 |
synovial membrane of synovial joint | 9.90e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
anemia | 7.48e-30 | 1 |
ovary epithelial cancer | 1.78e-29 | 1 |
hematopoietic system disease | 1.15e-15 | 2 |
cardiovascular system disease | 1.70e-08 | 4 |