FFCP PHASE1:Hg19::chr12:47182487..47182490,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:47182487..47182490,- | |||
|coexpression_cluster_id=C1670 | |||
|description=CAGE_peak_at_chr12:47182487..47182490,- | |description=CAGE_peak_at_chr12:47182487..47182490,- | ||
|id=chr12:47182487..47182490,- | |id=chr12:47182487..47182490,- | ||
|ontology_enrichment_celltype=CL:0002076!5.02e-22!43;CL:0000223!2.48e-16!59;CL:0002368!2.47e-15!13;CL:0000066!6.00e-14!254;CL:0002251!9.67e-13!21;CL:0002159!7.61e-12!13;CL:0002166!4.49e-11!3;CL:0000068!7.30e-11!3;CL:0000069!7.30e-11!3;CL:0000307!7.30e-11!3;CL:0000377!7.30e-11!3;CL:0002621!1.04e-10!3;CL:0000220!5.52e-10!246;CL:0002321!7.89e-10!248;CL:0002573!3.43e-09!2;CL:0000076!6.31e-09!62;CL:0000244!5.79e-08!4;CL:0000731!5.79e-08!4;CL:0000317!1.20e-07!2;CL:1000448!1.20e-07!2;CL:0002308!1.20e-07!2;CL:0002140!1.20e-07!2;CL:0000362!8.16e-07!8 | |ontology_enrichment_celltype=CL:0002076!5.02e-22!43;CL:0000223!2.48e-16!59;CL:0002368!2.47e-15!13;CL:0000066!6.00e-14!254;CL:0002251!9.67e-13!21;CL:0002159!7.61e-12!13;CL:0002166!4.49e-11!3;CL:0000068!7.30e-11!3;CL:0000069!7.30e-11!3;CL:0000307!7.30e-11!3;CL:0000377!7.30e-11!3;CL:0002621!1.04e-10!3;CL:0000220!5.52e-10!246;CL:0002321!7.89e-10!248;CL:0002573!3.43e-09!2;CL:0000076!6.31e-09!62;CL:0000244!5.79e-08!4;CL:0000731!5.79e-08!4;CL:0000317!1.20e-07!2;CL:1000448!1.20e-07!2;CL:0002308!1.20e-07!2;CL:0002140!1.20e-07!2;CL:0000362!8.16e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002166;3.66e-43;3!CL:0002159;7.25e-36;14!CL:0002621;4.88e-20;3!CL:0000307;5.37e-20;3!CL:0002368;7.01e-18;13!CL:0000362;1.35e-14;9!CL:0002077;2.05e-13;34!CL:0000312;3.75e-12;5!CL:0002076;8.41e-12;42!CL:0000240;2.77e-10;6!CL:0000311;2.77e-10;6!CL:0000079;2.77e-10;6!CL:0000237;2.77e-10;6!CL:0000317;2.57e-08;2!CL:1000448;2.57e-08;2!CL:0002308;2.57e-08;2!CL:0002140;2.57e-08;2!CL:0002202;2.77e-07;9!CL:0002632;2.77e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,2.21e-43,3;CL:0002159,7.71e-36,14;CL:0000068,5.37e-20,3;CL:0000069,5.37e-20,3;CL:0000307,5.37e-20,3;CL:0002621,5.37e-20,3;CL:0000377,5.37e-20,3;CL:0002368,7.33e-18,13;CL:0002077,1.13e-14,34;CL:0000362,1.67e-14,9;CL:0000312,4.70e-12,5;CL:0002076,5.60e-12,42;CL:0000240,3.34e-10,6;CL:0000311,3.34e-10,6;CL:0000079,3.34e-10,6;CL:0000237,3.34e-10,6;CL:0000036,3.34e-10,6;CL:0000357,3.34e-10,6;CL:0000114,3.34e-10,6;CL:0000223,1.36e-08,58;CL:0000317,2.67e-08,2;CL:1000448,2.67e-08,2;CL:0002308,2.67e-08,2;CL:0002140,2.67e-08,2;CL:0000066,3.71e-08,253;CL:0002202,2.77e-07,9;CL:0002632,2.77e-07,9;CL:0002321,8.32e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000377;5.37e-20;3!CL:0000357;2.77e-10;6!CL:0000114;2.77e-10;6 | |||
|ontology_enrichment_disease=DOID:1749!1.02e-12!14 | |ontology_enrichment_disease=DOID:1749!1.02e-12!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001708;1.39e-32;4!UBERON:0008895;1.39e-32;4!UBERON:0011159;3.18e-26;5!UBERON:0001949;4.88e-20;3!UBERON:0011137;2.74e-12;11!UBERON:0010323;2.74e-12;11!UBERON:0010371;9.18e-12;31!UBERON:0000486;2.01e-11;12!UBERON:0003929;3.88e-09;7!UBERON:0003126;4.04e-09;7!UBERON:0001005;4.04e-09;7!UBERON:0001003;5.37e-09;15!UBERON:0007376;5.37e-09;15!UBERON:0000075;1.26e-08;16!UBERON:0002419;2.57e-08;2!UBERON:0007771;2.57e-08;2!UBERON:0003297;2.57e-08;2!UBERON:0001821;2.57e-08;2!UBERON:0003487;2.57e-08;2!UBERON:0001820;2.57e-08;2!UBERON:0003350;4.19e-08;8!UBERON:0001828;4.19e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,9.55e-33,4;UBERON:0008895,9.55e-33,4;UBERON:0011159,2.35e-26,5;UBERON:0010188,4.36e-22,6;UBERON:0002539,4.36e-22,6;UBERON:0008816,4.36e-22,6;UBERON:0001949,5.37e-20,3;UBERON:0010323,2.39e-12,11;UBERON:0011137,7.95e-10,14;UBERON:0003126,4.04e-09,7;UBERON:0001005,4.04e-09,7;UBERON:0001003,6.08e-09,15;UBERON:0007376,6.08e-09,15;UBERON:0007383,6.08e-09,15;UBERON:0000075,1.15e-08,16;UBERON:0003102,1.96e-08,99;UBERON:0002419,2.67e-08,2;UBERON:0007771,2.67e-08,2;UBERON:0003297,2.67e-08,2;UBERON:0001821,2.67e-08,2;UBERON:0003487,2.67e-08,2;UBERON:0001820,2.67e-08,2;UBERON:0005089,2.67e-08,2;UBERON:0005088,2.67e-08,2;UBERON:0003350,4.34e-08,8;UBERON:0001828,4.34e-08,8;UBERON:0008814,9.23e-08,18 | |||
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| ||
|short_description=p@chr12:47182487..47182490,- | |short_description=p@chr12:47182487..47182490,- | ||
}} | }} |
Latest revision as of 08:43, 24 July 2015
Short description: | p@chr12:47182487..47182490, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:47182487..47182490, - |
Coexpression cluster: | C1670_Urothelial_Mallassezderived_squamous_Gingival_Mammary_oral_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 2.21e-43 | 3 |
general ecto-epithelial cell | 7.71e-36 | 14 |
duct epithelial cell | 5.37e-20 | 3 |
branched duct epithelial cell | 5.37e-20 | 3 |
tracheal epithelial cell | 5.37e-20 | 3 |
gingival epithelial cell | 5.37e-20 | 3 |
tracheoblast | 5.37e-20 | 3 |
respiratory epithelial cell | 7.33e-18 | 13 |
ecto-epithelial cell | 1.13e-14 | 34 |
epidermal cell | 1.67e-14 | 9 |
keratinocyte | 4.70e-12 | 5 |
endo-epithelial cell | 5.60e-12 | 42 |
stratified squamous epithelial cell | 3.34e-10 | 6 |
keratin accumulating cell | 3.34e-10 | 6 |
stratified epithelial cell | 3.34e-10 | 6 |
keratinizing barrier epithelial cell | 3.34e-10 | 6 |
epithelial fate stem cell | 3.34e-10 | 6 |
stratified epithelial stem cell | 3.34e-10 | 6 |
surface ectodermal cell | 3.34e-10 | 6 |
endodermal cell | 1.36e-08 | 58 |
sebum secreting cell | 2.67e-08 | 2 |
epithelial cell of sweat gland | 2.67e-08 | 2 |
epithelial cell of skin gland | 2.67e-08 | 2 |
acinar cell of sebaceous gland | 2.67e-08 | 2 |
epithelial cell | 3.71e-08 | 253 |
epithelial cell of tracheobronchial tree | 2.77e-07 | 9 |
epithelial cell of lower respiratory tract | 2.77e-07 | 9 |
embryonic cell | 8.32e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 9.55e-33 | 4 |
splanchnocranium | 9.55e-33 | 4 |
primary subdivision of cranial skeletal system | 2.35e-26 | 5 |
protuberance | 4.36e-22 | 6 |
pharyngeal arch | 4.36e-22 | 6 |
embryonic head | 4.36e-22 | 6 |
gingival epithelium | 5.37e-20 | 3 |
cranial skeletal system | 2.39e-12 | 11 |
axial skeletal system | 7.95e-10 | 14 |
trachea | 4.04e-09 | 7 |
respiratory airway | 4.04e-09 | 7 |
skin epidermis | 6.08e-09 | 15 |
outer epithelium | 6.08e-09 | 15 |
enveloping layer of ectoderm | 6.08e-09 | 15 |
subdivision of skeletal system | 1.15e-08 | 16 |
surface structure | 1.96e-08 | 99 |
skin gland | 2.67e-08 | 2 |
epidermis gland | 2.67e-08 | 2 |
gland of integumental system | 2.67e-08 | 2 |
sebaceous gland | 2.67e-08 | 2 |
skin sebaceous gland | 2.67e-08 | 2 |
sweat gland | 2.67e-08 | 2 |
sweat gland placode | 2.67e-08 | 2 |
sebaceous gland placode | 2.67e-08 | 2 |
epithelium of mucosa | 4.34e-08 | 8 |
gingiva | 4.34e-08 | 8 |
pharyngeal arch system | 9.23e-08 | 18 |