FFCP PHASE1:Hg19::chr12:40618579..40618591,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=120892 | |EntrezGene=120892 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18618 | |HGNC=18618 | ||
|TSSclassifier=strong | |||
|UniProt=E9PC85,Q17RV3,Q5S007 | |UniProt=E9PC85,Q17RV3,Q5S007 | ||
|association_with_transcript=-221bp_to_ENST00000343742,NM_198578,uc001rmg.3_5end | |association_with_transcript=-221bp_to_ENST00000343742,NM_198578,uc001rmg.3_5end | ||
|cluster_id=chr12:40618579..40618591,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_7_at_LRRK2_5end | |description=CAGE_peak_7_at_LRRK2_5end | ||
|id=chr12:40618579..40618591,+ | |id=chr12:40618579..40618591,+ | ||
|ontology_enrichment_celltype=CL:0000766!3.85e-12!76;CL:0002057!7.35e-12!42;CL:0000860!1.67e-10!45;CL:0000094!5.34e-10!8;CL:0002194!1.24e-08!63;CL:0000576!1.24e-08!63;CL:0000040!1.24e-08!63;CL:0000559!1.24e-08!63;CL:0002009!4.26e-08!65;CL:0000839!6.47e-07!70 | |ontology_enrichment_celltype=CL:0000766!3.85e-12!76;CL:0002057!7.35e-12!42;CL:0000860!1.67e-10!45;CL:0000094!5.34e-10!8;CL:0002194!1.24e-08!63;CL:0000576!1.24e-08!63;CL:0000040!1.24e-08!63;CL:0000559!1.24e-08!63;CL:0002009!4.26e-08!65;CL:0000839!6.47e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000094;1.39e-22;8!CL:0000775;2.63e-22;3!CL:0000081;2.21e-16;11!CL:0000771;1.07e-15;2!CL:0002591;3.69e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.17e-22,8;CL:0000775,2.14e-22,3;CL:0000081,1.95e-16,11;CL:0000771,9.98e-16,2;CL:0000766,1.49e-11,72;CL:0002591,5.07e-08,1;CL:0000763,5.07e-07,108;CL:0000049,5.07e-07,108 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.10e-35!115;UBERON:0002390!1.76e-11!102;UBERON:0003061!1.76e-11!102;UBERON:0002193!6.42e-10!112;UBERON:0000178!7.96e-10!15;UBERON:0000179!7.96e-10!15;UBERON:0000463!7.96e-10!15;UBERON:0001049!1.00e-08!57;UBERON:0005068!1.00e-08!57;UBERON:0006241!1.00e-08!57;UBERON:0007135!1.00e-08!57;UBERON:0002780!3.42e-08!41;UBERON:0001890!3.42e-08!41;UBERON:0006240!3.42e-08!41;UBERON:0003075!4.80e-08!86;UBERON:0007284!4.80e-08!86;UBERON:0003080!7.61e-08!42;UBERON:0002616!2.69e-07!59;UBERON:0002346!3.07e-07!90;UBERON:0000468!5.54e-07!659;UBERON:0000467!6.09e-07!625;UBERON:0000480!7.25e-07!626 | |ontology_enrichment_uberon=UBERON:0007023!3.10e-35!115;UBERON:0002390!1.76e-11!102;UBERON:0003061!1.76e-11!102;UBERON:0002193!6.42e-10!112;UBERON:0000178!7.96e-10!15;UBERON:0000179!7.96e-10!15;UBERON:0000463!7.96e-10!15;UBERON:0001049!1.00e-08!57;UBERON:0005068!1.00e-08!57;UBERON:0006241!1.00e-08!57;UBERON:0007135!1.00e-08!57;UBERON:0002780!3.42e-08!41;UBERON:0001890!3.42e-08!41;UBERON:0006240!3.42e-08!41;UBERON:0003075!4.80e-08!86;UBERON:0007284!4.80e-08!86;UBERON:0003080!7.61e-08!42;UBERON:0002616!2.69e-07!59;UBERON:0002346!3.07e-07!90;UBERON:0000468!5.54e-07!659;UBERON:0000467!6.09e-07!625;UBERON:0000480!7.25e-07!626 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.63e-22;15!UBERON:0000179;3.63e-22;15!UBERON:0000463;3.63e-22;15!UBERON:0002390;8.11e-09;32!UBERON:0005795;3.69e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.44e-22,15;UBERON:0000179,2.44e-22,15;UBERON:0000463,2.44e-22,15;UBERON:0002390,5.19e-11,98;UBERON:0003061,5.19e-11,98;UBERON:0002193,9.30e-10,108 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0.895661896959697,0.32389366601898,0.257575567634187,0.726991193897824,0,0.485168122375632,0.232429036905685,0,0.309706370895104,0.575384784644301,0.768482119587302,1.41889337933151,0,0,1.35426486594342,0.376484679085209,0,0.224723484445085,0,0,0,0.989553900560148,1.19678194572979,1.70489900213078,0.290209238628584,0,0.622822248995575,1.50749199154046,0.521482918420201,0.868755378820466,0.605399502633369,0,0.316462387440884,0.211255286311942,0,0,0.561643155732475,1.05123824989054,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,7.75560528296651,0,0,0,0.264818361626438,0.573673241497627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.206651562351531,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0,0,0.438977620880838,0.30648779579902,0.600952235626387,0,0,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0.276149695926898,0.161646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00451418286425,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,2.99602809578873,2.99161459204025,3.72973962092432,0,0,0,0.415941723061614,0,0.157702415033935,0.35142424497814,0,0,0,0,0,0.173767228936166,0,0,0.206768026122887,0.431428401637234,0.106727557803444,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.272999822815972,0,1.13008116620243,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0.507447609232169,1.52927441428475,2.27858874869665,1.42939065274673,1.64544909234478,3.24236655596359,0.540031437238115,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0,0,0,0,0,0.994147647766298,0,0,0,0,1.39473591775749,0,0,0,0,0.311039587661807,0,0,0,0.394573622547734,2.3948309234694,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442317039724898,0,0.87754158861589,0,0,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.252746318513952,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0.0882561266915003,0.225980740780532,0,0,0.253243183823515,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0.558564802544508,0.458320848023367,0.717873024576814,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.182248669974074,0,0.709251365692784,1.15400093896996,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.171086837884329,0,0.320362237703084,0.314408610199332,0,0.496166021811951,0,0,0,0,0,0,0,0,1.77213635993397,0.122026264901963,0.3755727921195,0,0.110929051536852,0.310482014706917,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0.889811221596536,0,0,0.15543720058278,0,0.159296767163702,0,0.310525913752519,0,0.265841714557995,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.41023272848151,0.252071696221718,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.253663240775627,0,0,0,0,0,0,0.672567444437648,1.21393120847326,0.227662191351298,0.0887023701626388,0.115233987555779,0,0.475788130837822,0.328863867814245,0,0,0.156986185701028,0.471346769748006,0,0.913158720509496,0.215927591218621,0,0.571812353413251,0,0,0,0,0.414432328326074,0.17071847709395,0,0,0.236664001461131,0.170426809518315,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.245148321753905,0,0.392616934229891,0.297046400327086,0,0,0.187967835959707,0.0644578879735772,0,0,0,0,0.730336388246517,0.458729283404541,0.286679166302903,0,0.271965960763659,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0.535928260312357,0,0.20686599172379,0.426467963801962,0,0.0645889098360061,0.124149428591716,0,0.190941474834495,0.202117188958219,0.217716747896961,0,0,0.071722205392676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| ||
|short_description=p7@LRRK2 | |short_description=p7@LRRK2 | ||
}} | }} |
Latest revision as of 06:43, 18 September 2015
Short description: | p7@LRRK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LRRK2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -221bp_to_ENST00000343742, NM_198578, uc001rmg.3_5end |
EntrezGene: | LRRK2 |
HGNC: | 18618 |
UniProt: | E9PC85Q17RV3Q5S007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.17e-22 | 8 |
neutrophil | 2.14e-22 | 3 |
blood cell | 1.95e-16 | 11 |
eosinophil | 9.98e-16 | 2 |
myeloid leukocyte | 1.49e-11 | 72 |
smooth muscle cell of the pulmonary artery | 5.07e-08 | 1 |
myeloid cell | 5.07e-07 | 108 |
common myeloid progenitor | 5.07e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
blood | 2.44e-22 | 15 |
haemolymphatic fluid | 2.44e-22 | 15 |
organism substance | 2.44e-22 | 15 |
hematopoietic system | 5.19e-11 | 98 |
blood island | 5.19e-11 | 98 |
hemolymphoid system | 9.30e-10 | 108 |