FFCP PHASE1:Hg19::chr17:46908385..46908412,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10241 | |EntrezGene=10241 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29912 | |HGNC=29912 | ||
|TSSclassifier=strong | |||
|UniProt=E7ETP5,B4DP36,E7ENK0,D6RJE7,E9PBE5,D6REB0 | |UniProt=E7ETP5,B4DP36,E7ENK0,D6RJE7,E9PBE5,D6REB0 | ||
|association_with_transcript=0bp_to_ENST00000372317,ENST00000416445,ENST00000448105,ENST00000508679,ENST00000509415,ENST00000509507,ENST00000510356,ENST00000511697,ENST00000513119_5end | |association_with_transcript=0bp_to_ENST00000372317,ENST00000416445,ENST00000448105,ENST00000508679,ENST00000509415,ENST00000509507,ENST00000510356,ENST00000511697,ENST00000513119_5end | ||
|cluster_id=chr17:46908385..46908412,+ | |||
|description=CAGE_peak_1_at_CALCOCO2_5end | |description=CAGE_peak_1_at_CALCOCO2_5end | ||
|id=chr17:46908385..46908412,+ | |id=chr17:46908385..46908412,+ | ||
|ontology_enrichment_celltype=CL:0002057!4.88e-25!42;CL:0000860!7.56e-21!45;CL:0000766!1.11e-17!76;CL:0000839!6.41e-15!70;CL:0002194!1.99e-14!63;CL:0000576!1.99e-14!63;CL:0000040!1.99e-14!63;CL:0000559!1.99e-14!63;CL:0002009!2.16e-14!65;CL:0000557!1.48e-13!71;CL:0000763!1.68e-08!112;CL:0000049!1.68e-08!112 | |ontology_enrichment_celltype=CL:0002057!4.88e-25!42;CL:0000860!7.56e-21!45;CL:0000766!1.11e-17!76;CL:0000839!6.41e-15!70;CL:0002194!1.99e-14!63;CL:0000576!1.99e-14!63;CL:0000040!1.99e-14!63;CL:0000559!1.99e-14!63;CL:0002009!2.16e-14!65;CL:0000557!1.48e-13!71;CL:0000763!1.68e-08!112;CL:0000049!1.68e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.14e-18;33!CL:0002057;1.14e-18;33!CL:0000576;6.37e-15;48!CL:0000473;6.48e-13;39!CL:0000234;6.48e-13;39!CL:0000766;3.40e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.88e-25,42;CL:0002057,4.88e-25,42;CL:0000473,2.24e-21,48;CL:0000234,2.24e-21,48;CL:0000766,2.71e-20,72;CL:0000839,2.25e-17,66;CL:0002194,5.21e-17,59;CL:0000576,5.21e-17,59;CL:0000040,5.21e-17,59;CL:0000559,5.21e-17,59;CL:0002009,6.52e-17,61;CL:0000557,7.94e-16,67;CL:0000763,1.00e-09,108;CL:0000049,1.00e-09,108;CL:0002031,2.31e-07,120;CL:0000738,2.56e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;3.67e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.52e-17!115;UBERON:0002390!8.53e-14!102;UBERON:0003061!8.53e-14!102;UBERON:0002371!9.55e-12!80;UBERON:0002193!1.40e-11!112;UBERON:0001474!1.45e-10!86;UBERON:0004765!1.38e-09!101;UBERON:0001434!1.38e-09!101;UBERON:0002405!1.72e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.06e-17,114;UBERON:0002390,1.35e-15,98;UBERON:0003061,1.35e-15,98;UBERON:0002371,1.22e-13,76;UBERON:0002193,4.34e-13,108;UBERON:0001474,3.05e-12,82;UBERON:0004765,5.22e-12,90;UBERON:0001434,2.75e-11,100;UBERON:0002405,7.87e-11,93 | |||
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| ||
|short_description=p1@CALCOCO2 | |short_description=p1@CALCOCO2 | ||
}} | }} |
Latest revision as of 18:15, 15 September 2015
Short description: | p1@CALCOCO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CALCOCO2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372317, ENST00000416445, ENST00000448105, ENST00000508679, ENST00000509415, ENST00000509507, ENST00000510356, ENST00000511697, ENST00000513119_5end |
EntrezGene: | CALCOCO2 |
HGNC: | 29912 |
UniProt: | E7ETP5B4DP36E7ENK0D6RJE7E9PBE5D6REB0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.88e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.88e-25 | 42 |
defensive cell | 2.24e-21 | 48 |
phagocyte | 2.24e-21 | 48 |
myeloid leukocyte | 2.71e-20 | 72 |
myeloid lineage restricted progenitor cell | 2.25e-17 | 66 |
monopoietic cell | 5.21e-17 | 59 |
monocyte | 5.21e-17 | 59 |
monoblast | 5.21e-17 | 59 |
promonocyte | 5.21e-17 | 59 |
macrophage dendritic cell progenitor | 6.52e-17 | 61 |
granulocyte monocyte progenitor cell | 7.94e-16 | 67 |
myeloid cell | 1.00e-09 | 108 |
common myeloid progenitor | 1.00e-09 | 108 |
hematopoietic lineage restricted progenitor cell | 2.31e-07 | 120 |
leukocyte | 2.56e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.06e-17 | 114 |
hematopoietic system | 1.35e-15 | 98 |
blood island | 1.35e-15 | 98 |
bone marrow | 1.22e-13 | 76 |
hemolymphoid system | 4.34e-13 | 108 |
bone element | 3.05e-12 | 82 |
skeletal element | 5.22e-12 | 90 |
skeletal system | 2.75e-11 | 100 |
immune system | 7.87e-11 | 93 |