FFCP PHASE1:Hg19::chr16:50715635..50715648,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=124460 | |EntrezGene=124460 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30390 | |HGNC=30390 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z614 | |UniProt=Q7Z614 | ||
|association_with_transcript=-371bp_to_ENST00000300590,ENST00000413750,ENST00000423026,NM_001144972,NM_153337,NM_182854,uc002egi.3,uc002egk.2,uc010vgp.1_5end | |association_with_transcript=-371bp_to_ENST00000300590,ENST00000413750,ENST00000423026,NM_001144972,NM_153337,NM_182854,uc002egi.3,uc002egk.2,uc010vgp.1_5end | ||
|cluster_id=chr16:50715635..50715648,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_6_at_SNX20_5end | |description=CAGE_peak_6_at_SNX20_5end | ||
|id=chr16:50715635..50715648,- | |id=chr16:50715635..50715648,- | ||
|ontology_enrichment_celltype=CL:0002057!1.18e-58!42;CL:0000738!1.52e-56!140;CL:0000860!2.93e-54!45;CL:0002009!1.92e-53!65;CL:0002194!2.60e-48!63;CL:0000576!2.60e-48!63;CL:0000040!2.60e-48!63;CL:0000559!2.60e-48!63;CL:0000557!2.82e-48!71;CL:0000766!2.19e-47!76;CL:0002087!2.12e-46!119;CL:0000037!3.86e-46!172;CL:0000566!3.86e-46!172;CL:0002031!2.52e-44!124;CL:0000988!5.16e-43!182;CL:0000839!9.51e-43!70;CL:0002032!3.48e-42!165;CL:0000837!3.48e-42!165;CL:0000763!1.99e-40!112;CL:0000049!1.99e-40!112;CL:0000451!1.43e-24!10;CL:0000990!5.62e-24!8;CL:0000840!5.43e-21!5;CL:0001029!5.43e-21!5;CL:0000134!1.92e-16!358;CL:0002320!6.51e-16!365;CL:0000219!4.83e-14!390;CL:0000048!8.37e-12!430;CL:0000453!1.13e-11!5;CL:0000723!1.74e-11!436;CL:0000767!3.47e-11!3;CL:0000034!4.48e-11!444;CL:0002393!5.46e-10!9;CL:0002397!5.46e-10!9;CL:0001014!2.09e-08!2;CL:0001016!2.09e-08!2 | |ontology_enrichment_celltype=CL:0002057!1.18e-58!42;CL:0000738!1.52e-56!140;CL:0000860!2.93e-54!45;CL:0002009!1.92e-53!65;CL:0002194!2.60e-48!63;CL:0000576!2.60e-48!63;CL:0000040!2.60e-48!63;CL:0000559!2.60e-48!63;CL:0000557!2.82e-48!71;CL:0000766!2.19e-47!76;CL:0002087!2.12e-46!119;CL:0000037!3.86e-46!172;CL:0000566!3.86e-46!172;CL:0002031!2.52e-44!124;CL:0000988!5.16e-43!182;CL:0000839!9.51e-43!70;CL:0002032!3.48e-42!165;CL:0000837!3.48e-42!165;CL:0000763!1.99e-40!112;CL:0000049!1.99e-40!112;CL:0000451!1.43e-24!10;CL:0000990!5.62e-24!8;CL:0000840!5.43e-21!5;CL:0001029!5.43e-21!5;CL:0000134!1.92e-16!358;CL:0002320!6.51e-16!365;CL:0000219!4.83e-14!390;CL:0000048!8.37e-12!430;CL:0000453!1.13e-11!5;CL:0000723!1.74e-11!436;CL:0000767!3.47e-11!3;CL:0000034!4.48e-11!444;CL:0002393!5.46e-10!9;CL:0002397!5.46e-10!9;CL:0001014!2.09e-08!2;CL:0001016!2.09e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.92e-62;33!CL:0002057;4.92e-62;33!CL:0000473;1.01e-44;39!CL:0000234;1.01e-44;39!CL:0000576;6.82e-43;48!CL:0000766;6.20e-23;69!CL:0002393;1.36e-14;6!CL:0002397;1.36e-14;6!CL:0002087;1.28e-11;104!CL:0000763;4.05e-11;100!CL:0000738;9.78e-09;136!CL:0000840;3.80e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.81e-79,42;CL:0002057,6.81e-79,42;CL:0000473,1.01e-68,48;CL:0000234,1.01e-68,48;CL:0002009,1.45e-64,61;CL:0002194,1.83e-60,59;CL:0000576,1.83e-60,59;CL:0000040,1.83e-60,59;CL:0000559,1.83e-60,59;CL:0000557,1.22e-58,67;CL:0000839,7.04e-54,66;CL:0000766,3.08e-49,72;CL:0000763,1.35e-35,108;CL:0000049,1.35e-35,108;CL:0002031,8.50e-32,120;CL:0002087,5.32e-30,115;CL:0000738,9.17e-28,136;CL:0002032,4.74e-23,161;CL:0000837,4.74e-23,161;CL:0000037,5.58e-22,168;CL:0000988,1.00e-20,177;CL:0002393,5.89e-10,9;CL:0002397,5.89e-10,9;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000840,4.58e-07,5;CL:0001029,4.58e-07,5;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;7.19e-54;42!CL:0000049;5.80e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.79e-42!80;UBERON:0001474!1.75e-38!86;UBERON:0002390!8.04e-38!102;UBERON:0003061!8.04e-38!102;UBERON:0002193!9.94e-36!112;UBERON:0004765!1.42e-31!101;UBERON:0001434!1.42e-31!101;UBERON:0002405!1.78e-30!115;UBERON:0002204!6.68e-16!167;UBERON:0002384!3.45e-15!375;UBERON:0003081!2.76e-13!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.74e-51,76;UBERON:0001474,1.41e-47,82;UBERON:0004765,3.66e-43,90;UBERON:0002405,1.06e-41,93;UBERON:0002390,1.84e-39,98;UBERON:0003061,1.84e-39,98;UBERON:0001434,1.26e-38,100;UBERON:0002193,1.35e-35,108;UBERON:0002204,3.97e-22,167;UBERON:0003081,1.01e-17,203;UBERON:0000926,2.18e-10,315;UBERON:0004120,2.18e-10,315;UBERON:0006603,2.18e-10,315;UBERON:0002384,2.34e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.821005894499457,0.472264687882075,0.786728553697808,0.383829398097213,0.464448369948228,0,0,0,0,0,0,1.66198622559563,1.60435557976113,1.51907609501096,0,0,0,0,0,0.242584061187816,0,0.822335776043652,0,2.01384674625505,3.84241059793651,7.09446689665756,1.03423704220986,0.645484683583826,0,0,0,0.224723484445085,1.53041946185451,0.962787081228281,1.91801137739712,1.64925650093358,2.39356389145958,1.27867425159808,2.61188314765726,0.56738522469114,1.86846674698672,2.51248665256743,2.60741459210101,5.42972111762792,0,2.20966581592539,2.53169909952708,0,0.637812899895131,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0.786021525498329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0.649094787309367,0.174129737299267,0.398873881556595,1.19245312152671,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,1.349843349309,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.821005894499457,0.472264687882075,0.786728553697808,0.383829398097213,0.464448369948228,0,0,0,0,0,0,1.66198622559563,1.60435557976113,1.51907609501096,0,0,0,0,0,0.242584061187816,0,0.822335776043652,0,2.01384674625505,3.84241059793651,7.09446689665756,1.03423704220986,0.645484683583826,0,0,0,0.224723484445085,1.53041946185451,0.962787081228281,1.91801137739712,1.64925650093358,2.39356389145958,1.27867425159808,2.61188314765726,0.56738522469114,1.86846674698672,2.51248665256743,2.60741459210101,5.42972111762792,0,2.20966581592539,2.53169909952708,0,0.637812899895131,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0.786021525498329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0.649094787309367,0.174129737299267,0.398873881556595,1.19245312152671,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,1.349843349309,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p6@SNX20 | |short_description=p6@SNX20 | ||
}} | }} |
Latest revision as of 21:05, 16 September 2015
Short description: | p6@SNX20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SNX20_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -371bp_to_ENST00000300590, ENST00000413750, ENST00000423026, NM_001144972, NM_153337, NM_182854, uc002egi.3, uc002egk.2, uc010vgp.1_5end |
EntrezGene: | SNX20 |
HGNC: | 30390 |
UniProt: | Q7Z614 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.74e-51 | 76 |
bone element | 1.41e-47 | 82 |
skeletal element | 3.66e-43 | 90 |
immune system | 1.06e-41 | 93 |
hematopoietic system | 1.84e-39 | 98 |
blood island | 1.84e-39 | 98 |
skeletal system | 1.26e-38 | 100 |
hemolymphoid system | 1.35e-35 | 108 |
musculoskeletal system | 3.97e-22 | 167 |
lateral plate mesoderm | 1.01e-17 | 203 |
mesoderm | 2.18e-10 | 315 |
mesoderm-derived structure | 2.18e-10 | 315 |
presumptive mesoderm | 2.18e-10 | 315 |
connective tissue | 2.34e-08 | 371 |