FFCP PHASE1:Mm9::chr8:55162518..55162537,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22341 | |EntrezGene=22341 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=333 | |||
|TSSclassifier=NA | |||
|UniProt=P97953,C6F5S9 | |UniProt=P97953,C6F5S9 | ||
|association_with_transcript=-348bp_to_ENSMUST00000033919,NM_009506,uc009lsc.1,uc012gdw.1,uc012gdx.1_5end | |association_with_transcript=-348bp_to_ENSMUST00000033919,NM_009506,uc009lsc.1,uc012gdw.1,uc012gdx.1_5end | ||
|cluster_id=chr8:55162518..55162537,+ | |||
|description=CAGE_peak_1_at_Vegfc_5end | |description=CAGE_peak_1_at_Vegfc_5end | ||
|id=chr8:55162518..55162537,+ | |id=chr8:55162518..55162537,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!9.13e-11!23;UBERON:0001009!9.13e-11!23;UBERON:0004872!5.48e-10!33;UBERON:0007100!3.49e-09!18;UBERON:0000948!3.49e-09!18;UBERON:0005498!3.49e-09!18;UBERON:0004140!3.49e-09!18;UBERON:0009881!3.49e-09!18;UBERON:0004141!3.49e-09!18;UBERON:0003084!3.49e-09!18;UBERON:0007005!3.49e-09!18;UBERON:0004139!3.49e-09!18;UBERON:0004291!3.49e-09!18;UBERON:0003914!8.90e-09!47;UBERON:0002048!1.80e-08!14;UBERON:0000117!1.80e-08!14;UBERON:0000171!1.80e-08!14;UBERON:0000170!1.80e-08!14;UBERON:0005597!1.80e-08!14;UBERON:0000118!1.80e-08!14;UBERON:0000468!3.58e-08!333;UBERON:0000922!8.36e-07!328 | |ontology_enrichment_uberon=UBERON:0004535!9.13e-11!23;UBERON:0001009!9.13e-11!23;UBERON:0004872!5.48e-10!33;UBERON:0007100!3.49e-09!18;UBERON:0000948!3.49e-09!18;UBERON:0005498!3.49e-09!18;UBERON:0004140!3.49e-09!18;UBERON:0009881!3.49e-09!18;UBERON:0004141!3.49e-09!18;UBERON:0003084!3.49e-09!18;UBERON:0007005!3.49e-09!18;UBERON:0004139!3.49e-09!18;UBERON:0004291!3.49e-09!18;UBERON:0003914!8.90e-09!47;UBERON:0002048!1.80e-08!14;UBERON:0000117!1.80e-08!14;UBERON:0000171!1.80e-08!14;UBERON:0000170!1.80e-08!14;UBERON:0005597!1.80e-08!14;UBERON:0000118!1.80e-08!14;UBERON:0000468!3.58e-08!333;UBERON:0000922!8.36e-07!328 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,5.87e-11,23;UBERON:0001009,5.87e-11,23;UBERON:0004872,5.06e-10,33;UBERON:0007100,2.42e-09,18;UBERON:0000948,2.42e-09,18;UBERON:0005498,2.42e-09,18;UBERON:0004140,2.42e-09,18;UBERON:0009881,2.42e-09,18;UBERON:0004141,2.42e-09,18;UBERON:0003084,2.42e-09,18;UBERON:0007005,2.42e-09,18;UBERON:0004139,2.42e-09,18;UBERON:0004291,2.42e-09,18;UBERON:0003914,6.72e-09,47;UBERON:0002048,1.29e-08,14;UBERON:0000117,1.29e-08,14;UBERON:0000171,1.29e-08,14;UBERON:0000170,1.29e-08,14;UBERON:0005597,1.29e-08,14;UBERON:0000118,1.29e-08,14;UBERON:0002100,2.00e-07,90;UBERON:0005177,5.32e-07,79 | |||
|phase1_expression=0.640595388419176,2.09385244583617,2.72999543633722,3.93203474698879,9.5170188689806,1.17515490338323,2.10251376535973,0,0,0,0,0,0,0,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0,1.7008658030214,0,0,1.75991665072747,2.98232065387321,2.29692785646008,2.58457197695445,1.07735616342945,0.570070258369122,1.76421090831952,0.443461021310609,0,0,0,1.44425809875637,1.16364251750945,1.02084678131185,0,0,0,0,0,0,10.1976422560218,11.1514624341466,3.12029478674859,0.782391344348039,1.52617609466313,3.29529274101708,2.3331587888914,1.81982348112971,0,0,0,0,48.1075145387221,64.4700239862203,117.573237039257,1.01158230429799,0,1.26766280701236,5.08266798103698,3.55717918444456,0.899899717281399,0,1.4209602298922,0.898800331555214,1.15265491596466,1.65903379693564,0.810035629990144,0.841299845405528,1.14260393761521,0.441737081903227,0.61245399607477,0.575072826109418,0.919218786610021,0,0.127687338085188,0.46081959976873,1.18697658957174,1.55528994124096,2.08365348222704,0.837548997004143,1.68828783009504,0.763991238884051,2.06240009831567,0.854230084794618,1.3047961207771,0.605809546665472,0.226714680320357,3.76823835312181,5.16254326188832,0,1.07940638327563,1.94932925234301,0.448026887097336,2.38755514223978,0,0,0,0.704217098883403,0,0,0,0.216491041011214,1.52015919285059,1.01104889002957,2.2836775943812,11.1343289968284,1.63286352971307,4.3371331691534,2.74018930480927,3.68984795609694,4.6724018571313,3.64524992120685,4.39833069653864,8.15743393523434,6.65157041831594,1.76922110389975,4.04417124868523,5.07935492458905,4.84875253135222,1.86391761218122,1.17112318804619,1.25668024088073,2.29911349687732,0.359445373517761,0,0,0.299581278809645,0,0.376963056338593,2.08589184230732,1.02286182932132,0.83115217823824,0.486723789203273,4.27725328171328,5.10068579501381,0.505445516867349,2.31486041475121,2.73252930221678,2.98872735763515,4.32149111532838,2.71268672104287,2.38127747029647,1.7935920839879,2.24884138943349,3.88055056108524,2.37124792226126,3.59301552318857,4.92663147659057,5.2606975782618,5.56094498451196,3.83077383174383,5.35033554660653,4.77682240364384,0.702213187313235,0,0,8.07790512888457,9.14651633926275,9.7233513188948,7.33908680314152,10.4285042826124,8.4846912088058,4.65067889500816,5.36546802799238,4.08678698285093,4.93679549740441,6.07419617092652,6.56657357321431,4.82459958503597,4.17145219052996,7.38135303182045,2.52347938276953,2.05809224758569,0.330418782983798,3.43785736662608,7.46508876873319,5.10920678092965,5.41243337552792,6.45387278794696,8.67274370994994,9.13083005340284,3.32170343081158,6.75265714368445,8.04272668160862,4.77495532898762,6.23885078781184,0,4.75503709724327,1.7922714592893,4.36236172192088,6.62641373136427,3.38123207019241,2.64746726198909,4.46090720485539,3.50679099451593,3.98390183882821,1.18088118383682,0.941992367048249,1.60416313098341,1.77871576252289,3.17005700860579,2.75182593158484,2.69834534861824,2.23146133527353,2.41177159752417,2.80088436959562,5.75392274901621,2.43202840162553,2.47105271869273,20.1275489138296,6.32639611036456,6.55279113540577,3.53610429125956,5.56131981917928,2.41221760681684,12.3784637411625,6.63219941196697,4.4000543639347,7.46878377410828,6.80601720036656,5.86271901046355,7.85544014923845,14.4398899414771,10.2462843669024,8.41565820665345,10.2051051940792,10.1595255123758,6.38934432903814,8.10034728056465,0,1.08781136763742,0.491764273019036,1.65562047782839,1.76605648986571,0.586058432961016,2.29508923527346,1.26235463602186,2.52406575533005,1.95219372148319,0.861693590931196,1.19484398976276,1.33679204449436,1.41538265394416,1.21443210502468,1.75353514746787,1.97643888973262,1.92792789853084,4.5420827266646,2.84904965867608,2.76907830901079,4.94910368917606,1.32745138339963,2.6705869977048,2.72091201268276,3.77210159511796,4.13422650033082,6.45613810682248,6.71913562237375,3.63533729477506,2.49548164869305,2.84433082142234,0,3.09406629744561,7.48967132658334,6.48219938512717,6.72665155670323,8.57348140126369,7.27094957933322,8.56170324489939,5.26556865926787,5.48036908406279,1.64270195644597,0.63549621259146,0.882113592219848,3.95727007059552,3.71368181400583,3.49814964583304,2.98430860007841,2.46211349617592,4.08073171281791,0.556275906031529,2.05045056957423,10.1129565301979,12.222838806401,2.44878994106098,2.05041341581538,2.97411625168479,1.18984900995699,1.53946597556024,1.38199973804424,2.86401185404534,8.22473583310952,4.47302827679067,3.99619761040665,3.97267762427491,4.14888871117737,3.10187996685088,2.39695021603474,1.04702376793612,2.85152941241944,3.10669656543463,0,0.149516546043979,2.64733584731356,1.55560950675238,3.22899558694328,2.70329800785245,1.5256441023948,2.3436789271911,0.943734099831398,0.724752362478018,1.15212002503146,0.316011120628178,1.41907650703115,2.15693010046137,0.77952493786677,1.43221356533985,0,0.360586348559907,0.443068581523732,0.201932899896295,0.304827226619999,0.403304740547362,0.292373642219257,0.384847366561318,0.233753804363138,2.72076460338254,0.665957860122194,0.0897138566094757,0.167884616364078,2.89784391048286,1.50145980360946,3.11357761254351,1.50057865355346,1.50471631210609,1.12950368523413,0,0.572895513439397,0.515559547031063,0.685082519770642,0.755393897389701,0,0,0.906284817968409,0.51776031175182,3.00983307994112,1.99512436700516,2.73173769206615,3.64660075602441,2.30574478890781,4.41224420280034,3.33370091702423,4.32673620201678,8.66481865897901,3.53776096469316,4.56262739802432,4.71565853465191,5.15028291084353,4.67383612555546,4.82457939227151,10.0021675169445,3.59241410429052,2.70072908649187,4.12085900803307,4.41596760403192,5.82877729055206,6.03417740941747,3.81497903915713,3.34296758254356,4.32903149910521,5.16149108139227,4.93905526756486,3.15683653725411,4.88894809845102,3.92799590160417,5.21994079746366,4.33419722452479,2.45538625901814,4.18329471202108,4.24394544158511,3.49734809113124,3.74290573512653,2.14871054048298,3.44318997723918,3.08827986767322,5.79669589051054 | |phase1_expression=0.640595388419176,2.09385244583617,2.72999543633722,3.93203474698879,9.5170188689806,1.17515490338323,2.10251376535973,0,0,0,0,0,0,0,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0,1.7008658030214,0,0,1.75991665072747,2.98232065387321,2.29692785646008,2.58457197695445,1.07735616342945,0.570070258369122,1.76421090831952,0.443461021310609,0,0,0,1.44425809875637,1.16364251750945,1.02084678131185,0,0,0,0,0,0,10.1976422560218,11.1514624341466,3.12029478674859,0.782391344348039,1.52617609466313,3.29529274101708,2.3331587888914,1.81982348112971,0,0,0,0,48.1075145387221,64.4700239862203,117.573237039257,1.01158230429799,0,1.26766280701236,5.08266798103698,3.55717918444456,0.899899717281399,0,1.4209602298922,0.898800331555214,1.15265491596466,1.65903379693564,0.810035629990144,0.841299845405528,1.14260393761521,0.441737081903227,0.61245399607477,0.575072826109418,0.919218786610021,0,0.127687338085188,0.46081959976873,1.18697658957174,1.55528994124096,2.08365348222704,0.837548997004143,1.68828783009504,0.763991238884051,2.06240009831567,0.854230084794618,1.3047961207771,0.605809546665472,0.226714680320357,3.76823835312181,5.16254326188832,0,1.07940638327563,1.94932925234301,0.448026887097336,2.38755514223978,0,0,0,0.704217098883403,0,0,0,0.216491041011214,1.52015919285059,1.01104889002957,2.2836775943812,11.1343289968284,1.63286352971307,4.3371331691534,2.74018930480927,3.68984795609694,4.6724018571313,3.64524992120685,4.39833069653864,8.15743393523434,6.65157041831594,1.76922110389975,4.04417124868523,5.07935492458905,4.84875253135222,1.86391761218122,1.17112318804619,1.25668024088073,2.29911349687732,0.359445373517761,0,0,0.299581278809645,0,0.376963056338593,2.08589184230732,1.02286182932132,0.83115217823824,0.486723789203273,4.27725328171328,5.10068579501381,0.505445516867349,2.31486041475121,2.73252930221678,2.98872735763515,4.32149111532838,2.71268672104287,2.38127747029647,1.7935920839879,2.24884138943349,3.88055056108524,2.37124792226126,3.59301552318857,4.92663147659057,5.2606975782618,5.56094498451196,3.83077383174383,5.35033554660653,4.77682240364384,0.702213187313235,0,0,8.07790512888457,9.14651633926275,9.7233513188948,7.33908680314152,10.4285042826124,8.4846912088058,4.65067889500816,5.36546802799238,4.08678698285093,4.93679549740441,6.07419617092652,6.56657357321431,4.82459958503597,4.17145219052996,7.38135303182045,2.52347938276953,2.05809224758569,0.330418782983798,3.43785736662608,7.46508876873319,5.10920678092965,5.41243337552792,6.45387278794696,8.67274370994994,9.13083005340284,3.32170343081158,6.75265714368445,8.04272668160862,4.77495532898762,6.23885078781184,0,4.75503709724327,1.7922714592893,4.36236172192088,6.62641373136427,3.38123207019241,2.64746726198909,4.46090720485539,3.50679099451593,3.98390183882821,1.18088118383682,0.941992367048249,1.60416313098341,1.77871576252289,3.17005700860579,2.75182593158484,2.69834534861824,2.23146133527353,2.41177159752417,2.80088436959562,5.75392274901621,2.43202840162553,2.47105271869273,20.1275489138296,6.32639611036456,6.55279113540577,3.53610429125956,5.56131981917928,2.41221760681684,12.3784637411625,6.63219941196697,4.4000543639347,7.46878377410828,6.80601720036656,5.86271901046355,7.85544014923845,14.4398899414771,10.2462843669024,8.41565820665345,10.2051051940792,10.1595255123758,6.38934432903814,8.10034728056465,0,1.08781136763742,0.491764273019036,1.65562047782839,1.76605648986571,0.586058432961016,2.29508923527346,1.26235463602186,2.52406575533005,1.95219372148319,0.861693590931196,1.19484398976276,1.33679204449436,1.41538265394416,1.21443210502468,1.75353514746787,1.97643888973262,1.92792789853084,4.5420827266646,2.84904965867608,2.76907830901079,4.94910368917606,1.32745138339963,2.6705869977048,2.72091201268276,3.77210159511796,4.13422650033082,6.45613810682248,6.71913562237375,3.63533729477506,2.49548164869305,2.84433082142234,0,3.09406629744561,7.48967132658334,6.48219938512717,6.72665155670323,8.57348140126369,7.27094957933322,8.56170324489939,5.26556865926787,5.48036908406279,1.64270195644597,0.63549621259146,0.882113592219848,3.95727007059552,3.71368181400583,3.49814964583304,2.98430860007841,2.46211349617592,4.08073171281791,0.556275906031529,2.05045056957423,10.1129565301979,12.222838806401,2.44878994106098,2.05041341581538,2.97411625168479,1.18984900995699,1.53946597556024,1.38199973804424,2.86401185404534,8.22473583310952,4.47302827679067,3.99619761040665,3.97267762427491,4.14888871117737,3.10187996685088,2.39695021603474,1.04702376793612,2.85152941241944,3.10669656543463,0,0.149516546043979,2.64733584731356,1.55560950675238,3.22899558694328,2.70329800785245,1.5256441023948,2.3436789271911,0.943734099831398,0.724752362478018,1.15212002503146,0.316011120628178,1.41907650703115,2.15693010046137,0.77952493786677,1.43221356533985,0,0.360586348559907,0.443068581523732,0.201932899896295,0.304827226619999,0.403304740547362,0.292373642219257,0.384847366561318,0.233753804363138,2.72076460338254,0.665957860122194,0.0897138566094757,0.167884616364078,2.89784391048286,1.50145980360946,3.11357761254351,1.50057865355346,1.50471631210609,1.12950368523413,0,0.572895513439397,0.515559547031063,0.685082519770642,0.755393897389701,0,0,0.906284817968409,0.51776031175182,3.00983307994112,1.99512436700516,2.73173769206615,3.64660075602441,2.30574478890781,4.41224420280034,3.33370091702423,4.32673620201678,8.66481865897901,3.53776096469316,4.56262739802432,4.71565853465191,5.15028291084353,4.67383612555546,4.82457939227151,10.0021675169445,3.59241410429052,2.70072908649187,4.12085900803307,4.41596760403192,5.82877729055206,6.03417740941747,3.81497903915713,3.34296758254356,4.32903149910521,5.16149108139227,4.93905526756486,3.15683653725411,4.88894809845102,3.92799590160417,5.21994079746366,4.33419722452479,2.45538625901814,4.18329471202108,4.24394544158511,3.49734809113124,3.74290573512653,2.14871054048298,3.44318997723918,3.08827986767322,5.79669589051054 | ||
|short_description=p1@Vegfc | |short_description=p1@Vegfc | ||
}} | }} |
Latest revision as of 15:16, 25 September 2015
Short description: | p1@Vegfc |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vegfc_5end |
Coexpression cluster: | MCL_coexpression_mm9:333 |
Association with transcript: | -348bp_to_ENSMUST00000033919, NM_009506, uc009lsc.1, uc012gdw.1, uc012gdx.1_5end |
EntrezGene: | Vegfc |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 5.87e-11 | 23 |
circulatory system | 5.87e-11 | 23 |
splanchnic layer of lateral plate mesoderm | 5.06e-10 | 33 |
primary circulatory organ | 2.42e-09 | 18 |
heart | 2.42e-09 | 18 |
primitive heart tube | 2.42e-09 | 18 |
primary heart field | 2.42e-09 | 18 |
anterior lateral plate mesoderm | 2.42e-09 | 18 |
heart tube | 2.42e-09 | 18 |
heart primordium | 2.42e-09 | 18 |
cardiac mesoderm | 2.42e-09 | 18 |
cardiogenic plate | 2.42e-09 | 18 |
heart rudiment | 2.42e-09 | 18 |
epithelial tube | 6.72e-09 | 47 |
lung | 1.29e-08 | 14 |
respiratory tube | 1.29e-08 | 14 |
respiration organ | 1.29e-08 | 14 |
pair of lungs | 1.29e-08 | 14 |
lung primordium | 1.29e-08 | 14 |
lung bud | 1.29e-08 | 14 |
trunk | 2.00e-07 | 90 |
trunk region element | 5.32e-07 | 79 |