FFCP PHASE1:Hg19::chr11:1890056..1890067,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4046 | |EntrezGene=4046 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6707 | |HGNC=6707 | ||
|TSSclassifier=strong | |||
|UniProt=E9PBV6,P33241 | |UniProt=E9PBV6,P33241 | ||
|association_with_transcript=153bp_to_ENST00000405957,NM_001013253,uc001luk.2_5end | |association_with_transcript=153bp_to_ENST00000405957,NM_001013253,uc001luk.2_5end | ||
|cluster_id=chr11:1890056..1890067,+ | |||
|coexpression_cluster_id=C2118 | |||
|description=CAGE_peak_12_at_LSP1_5end | |description=CAGE_peak_12_at_LSP1_5end | ||
|id=chr11:1890056..1890067,+ | |id=chr11:1890056..1890067,+ | ||
|ontology_enrichment_celltype=CL:0000188!3.64e-12!9;CL:0000153!1.08e-09!9;CL:0000447!1.08e-09!9;CL:0000667!5.13e-08!6;CL:0000058!5.13e-08!6;CL:0000138!5.13e-08!6;CL:0000327!2.01e-07!14;CL:0000515!3.95e-07!4;CL:0000135!4.91e-07!3;CL:0000386!4.91e-07!3;CL:0000388!4.91e-07!3 | |ontology_enrichment_celltype=CL:0000188!3.64e-12!9;CL:0000153!1.08e-09!9;CL:0000447!1.08e-09!9;CL:0000667!5.13e-08!6;CL:0000058!5.13e-08!6;CL:0000138!5.13e-08!6;CL:0000327!2.01e-07!14;CL:0000515!3.95e-07!4;CL:0000135!4.91e-07!3;CL:0000386!4.91e-07!3;CL:0000388!4.91e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000138;1.45e-15;6!CL:0000153;1.01e-14;9!CL:0000447;1.01e-14;9!CL:0000135;4.88e-13;3!CL:0000388;4.88e-13;3!CL:0000499;8.38e-12;28!CL:0000327;2.30e-11;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.47e-15,6;CL:0000138,1.47e-15,6;CL:0000153,1.01e-14,9;CL:0000447,1.01e-14,9;CL:0000135,4.90e-13,3;CL:0000388,4.90e-13,3;CL:0000499,8.19e-12,28;CL:0000327,2.23e-11,15 | |||
|ontology_enrichment_development_v019=UBERON:0005062;2.50e-09;4!UBERON:0007284;2.50e-09;4!UBERON:0006603;3.29e-09;65!UBERON:0006965;4.99e-09;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.96e-28!115;UBERON:0000043!4.91e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;4.88e-13;3!UBERON:0000043;4.88e-13;3!UBERON:0007845;4.88e-13;3!UBERON:0003978;2.67e-12;3!UBERON:0000946;2.67e-12;3!UBERON:0002133;1.52e-08;2!UBERON:0000341;1.70e-08;2!UBERON:0002081;6.50e-08;2!UBERON:0001134;1.58e-07;16!UBERON:0002036;1.58e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,4.90e-13,3;UBERON:0000043,4.90e-13,3;UBERON:0007845,4.90e-13,3;UBERON:0007023,5.89e-13,114;UBERON:0003978,2.67e-12,3;UBERON:0009751,2.67e-12,3;UBERON:0000946,2.67e-12,3;UBERON:0002523,2.67e-12,3;UBERON:0005983,2.67e-12,3;UBERON:0002165,2.67e-12,3;UBERON:0002062,2.67e-12,3;UBERON:0007280,2.67e-12,3;UBERON:0002133,1.55e-08,2;UBERON:0000341,1.73e-08,2;UBERON:0002081,6.75e-08,2;UBERON:0010227,6.75e-08,2 | |||
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| ||
|short_description=p12@LSP1 | |short_description=p12@LSP1 | ||
}} | }} |
Latest revision as of 04:07, 17 September 2015
Short description: | p12@LSP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LSP1_5end |
Coexpression cluster: | C2118_Mesenchymal_Chondrocyte_tenocyte_retina_Synoviocyte_heart_spleen |
Association with transcript: | 153bp_to_ENST00000405957, NM_001013253, uc001luk.2_5end |
EntrezGene: | LSP1 |
HGNC: | 6707 |
UniProt: | E9PBV6P33241 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.47e-15 | 6 |
chondrocyte | 1.47e-15 | 6 |
GAG secreting cell | 1.01e-14 | 9 |
carbohydrate secreting cell | 1.01e-14 | 9 |
fibrocyte | 4.90e-13 | 3 |
tendon cell | 4.90e-13 | 3 |
stromal cell | 8.19e-12 | 28 |
extracellular matrix secreting cell | 2.23e-11 | 15 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 4.90e-13 | 3 |
tendon | 4.90e-13 | 3 |
regular connective tissue | 4.90e-13 | 3 |
adult organism | 5.89e-13 | 114 |
valve | 2.67e-12 | 3 |
cardiac mesenchyme | 2.67e-12 | 3 |
cardial valve | 2.67e-12 | 3 |
tunica intima | 2.67e-12 | 3 |
heart layer | 2.67e-12 | 3 |
endocardium | 2.67e-12 | 3 |
endocardial cushion | 2.67e-12 | 3 |
presumptive endocardium | 2.67e-12 | 3 |
atrioventricular valve | 1.55e-08 | 2 |
throat | 1.73e-08 | 2 |
cardiac atrium | 6.75e-08 | 2 |
future cardiac atrium | 6.75e-08 | 2 |