FFCP PHASE1:Hg19::chr11:17555398..17555410,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10083 | |EntrezGene=10083 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12597 | |HGNC=12597 | ||
|TSSclassifier=strong | |||
|UniProt=E9PNW1 | |UniProt=E9PNW1 | ||
|association_with_transcript=10bp_to_ENST00000526181_5end | |association_with_transcript=10bp_to_ENST00000526181_5end | ||
|cluster_id=chr11:17555398..17555410,- | |||
|coexpression_cluster_id=C137 | |||
|description=CAGE_peak_9_at_USH1C_5end | |description=CAGE_peak_9_at_USH1C_5end | ||
|id=chr11:17555398..17555410,- | |id=chr11:17555398..17555410,- | ||
|ontology_enrichment_celltype=CL:0002150!1.48e-29!3;CL:0000861!1.48e-29!3;CL:0000235!2.80e-09!10 | |ontology_enrichment_celltype=CL:0002150!1.48e-29!3;CL:0000861!1.48e-29!3;CL:0000235!2.80e-09!10 | ||
|ontology_enrichment_celltype_v019=CL:0000082;3.78e-14;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,3.31e-14,19 | |||
|ontology_enrichment_development_v019=UBERON:0010115;2.37e-29;1!UBERON:0001041;1.37e-15;30!UBERON:0008947;1.61e-09;29 | |||
|ontology_enrichment_disease=DOID:305!2.19e-15!106;DOID:0050687!8.10e-11!143 | |ontology_enrichment_disease=DOID:305!2.19e-15!106;DOID:0050687!8.10e-11!143 | ||
|ontology_enrichment_disease_v019=DOID:1324;1.04e-17;15!DOID:0050615;1.18e-16;16!DOID:4556;6.73e-11;3!DOID:3908;4.79e-07;5!DOID:4362;5.08e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1324,8.77e-18,15;DOID:0050615,1.01e-16,16;DOID:4556,6.73e-11,3;DOID:3908,4.79e-07,5;DOID:4362,5.08e-07,5;DOID:305,5.42e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!8.32e-26!9;UBERON:0008947!4.50e-15!38;UBERON:0003258!4.50e-15!38;UBERON:0001896!1.50e-13!3;UBERON:0005290!1.50e-13!3;UBERON:0010096!1.50e-13!3;UBERON:0000072!2.76e-12!46;UBERON:0001557!3.34e-12!19;UBERON:0002363!4.58e-11!1;UBERON:0007647!4.58e-11!1;UBERON:0010115!4.58e-11!1;UBERON:0000065!1.56e-10!53;UBERON:0000063!4.05e-10!97;UBERON:0001004!1.71e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0002363;2.37e-29;1!UBERON:0002360;2.05e-15;2!UBERON:0000094;2.05e-15;2!UBERON:0010743;2.05e-15;2!UBERON:0004802;3.78e-14;19!UBERON:0000115;3.78e-14;19!UBERON:0002048;2.54e-12;22!UBERON:0004807;2.54e-12;22!UBERON:0000117;2.54e-12;22!UBERON:0000171;2.54e-12;22!UBERON:0000170;2.54e-12;22!UBERON:0002394;2.26e-08;4!UBERON:0003928;2.26e-08;4!UBERON:0005911;2.07e-07;36!UBERON:0005178;5.77e-07;34!UBERON:0002224;5.77e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002363,4.20e-29,1;UBERON:0007645,4.20e-29,1;UBERON:0007647,4.20e-29,1;UBERON:0010115,4.20e-29,1;UBERON:0002360,2.74e-15,2;UBERON:0000094,2.74e-15,2;UBERON:0010743,2.74e-15,2;UBERON:0004802,3.31e-14,19;UBERON:0000115,3.31e-14,19;UBERON:0002048,2.26e-12,22;UBERON:0000117,2.26e-12,22;UBERON:0000171,2.26e-12,22;UBERON:0000170,2.26e-12,22;UBERON:0005597,2.26e-12,22;UBERON:0000118,2.26e-12,22;UBERON:0004807,7.13e-10,28;UBERON:0005178,3.01e-08,34;UBERON:0002224,3.01e-08,34;UBERON:0005181,4.96e-08,35;UBERON:0005153,1.25e-07,37;UBERON:0008947,1.90e-07,38;UBERON:0003258,1.90e-07,38 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07412704805365,0,0,0,0,0,0,0,0,0,0,0,0,1.65471377237555,0,0,0,0,0,0,0,0,0,4.13966161372163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01098527405581,0,0,0,0,0,0,0,0,0,0,0,0,0,0.774050650312681,0.877071805034227,1.06750094169172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.14365430597508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665574309221114,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07412704805365,0,0,0,0,0,0,0,0,0,0,0,0,1.65471377237555,0,0,0,0,0,0,0,0,0,4.13966161372163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01098527405581,0,0,0,0,0,0,0,0,0,0,0,0,0,0.774050650312681,0.877071805034227,1.06750094169172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.14365430597508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665574309221114,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p9@USH1C | |short_description=p9@USH1C | ||
}} | }} |
Latest revision as of 00:28, 17 September 2015
Short description: | p9@USH1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_USH1C_5end |
Coexpression cluster: | C137_large_ductal_melanoma_cervical_Endothelial_Smooth_chronic |
Association with transcript: | 10bp_to_ENST00000526181_5end |
EntrezGene: | USH1C |
HGNC: | 12597 |
UniProt: | E9PNW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 3.31e-14 | 19 |
Ontology term | p-value | n |
---|---|---|
dura mater | 4.20e-29 | 1 |
future meninx | 4.20e-29 | 1 |
ectomeninx | 4.20e-29 | 1 |
future dura mater | 4.20e-29 | 1 |
meninx | 2.74e-15 | 2 |
membrane organ | 2.74e-15 | 2 |
meningeal cluster | 2.74e-15 | 2 |
respiratory tract epithelium | 3.31e-14 | 19 |
lung epithelium | 3.31e-14 | 19 |
lung | 2.26e-12 | 22 |
respiratory tube | 2.26e-12 | 22 |
respiration organ | 2.26e-12 | 22 |
pair of lungs | 2.26e-12 | 22 |
lung primordium | 2.26e-12 | 22 |
lung bud | 2.26e-12 | 22 |
respiratory system epithelium | 7.13e-10 | 28 |
thoracic cavity element | 3.01e-08 | 34 |
thoracic cavity | 3.01e-08 | 34 |
thoracic segment organ | 4.96e-08 | 35 |
epithelial bud | 1.25e-07 | 37 |
respiratory primordium | 1.90e-07 | 38 |
endoderm of foregut | 1.90e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
lung cancer | 8.77e-18 | 15 |
respiratory system cancer | 1.01e-16 | 16 |
lung large cell carcinoma | 6.73e-11 | 3 |
non-small cell lung carcinoma | 4.79e-07 | 5 |
cervical cancer | 5.08e-07 | 5 |
carcinoma | 5.42e-07 | 106 |