FFCP PHASE1:Hg19::chr10:112631639..112631656,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:112631639..112631656,+
|short_description=p3@PDCD4
|description=CAGE_peak_3_at_PDCD4_5end
|association_with_transcript=0bp_to_ENST00000467574_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27250 | |EntrezGene=27250 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8763 | |HGNC=8763 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000467574_5end | |||
|cluster_id=chr10:112631639..112631656,+ | |||
|description=CAGE_peak_3_at_PDCD4_5end | |||
|id=chr10:112631639..112631656,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.62e-15!172;CL:0000566!3.62e-15!172;CL:0002032!2.59e-14!165;CL:0000837!2.59e-14!165;CL:0000738!6.86e-13!140;CL:0000988!1.26e-11!182;CL:0000763!3.27e-11!112;CL:0000049!3.27e-11!112;CL:0000766!2.66e-10!76;CL:0002031!4.52e-10!124;CL:0002087!2.94e-09!119;CL:0000557!1.51e-07!71;CL:0000839!2.98e-07!70 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.35e-14,168;CL:0002032,1.97e-13,161;CL:0000837,1.97e-13,161;CL:0000738,3.77e-12,136;CL:0000988,2.06e-11,177;CL:0000763,2.31e-10,108;CL:0000049,2.31e-10,108;CL:0000766,1.80e-09,72;CL:0002031,2.73e-09,120;CL:0002087,1.72e-08,115;CL:0000557,9.06e-07,67 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.72e-16!115;UBERON:0001049!6.38e-13!57;UBERON:0005068!6.38e-13!57;UBERON:0006241!6.38e-13!57;UBERON:0007135!6.38e-13!57;UBERON:0003080!1.31e-11!42;UBERON:0002780!2.43e-11!41;UBERON:0001890!2.43e-11!41;UBERON:0006240!2.43e-11!41;UBERON:0000955!6.45e-11!69;UBERON:0006238!6.45e-11!69;UBERON:0002616!1.90e-10!59;UBERON:0001017!5.92e-09!82;UBERON:0002020!9.26e-09!34;UBERON:0003528!9.26e-09!34;UBERON:0005743!1.09e-08!86;UBERON:0001893!1.25e-08!34;UBERON:0002346!1.93e-08!90;UBERON:0002791!2.68e-08!33;UBERON:0000073!5.25e-08!94;UBERON:0001016!5.25e-08!94;UBERON:0003075!5.37e-08!86;UBERON:0007284!5.37e-08!86;UBERON:0001869!5.82e-08!32;UBERON:0002390!9.95e-08!102;UBERON:0003061!9.95e-08!102;UBERON:0002193!1.37e-07!112;UBERON:0000153!1.46e-07!129;UBERON:0007811!1.46e-07!129;UBERON:0002619!5.55e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.06e-09;41!UBERON:0001890;8.06e-09;41!UBERON:0003528;5.43e-08;34!UBERON:0002020;5.43e-08;34!UBERON:0001893;7.45e-08;34!UBERON:0000073;1.33e-07;53!UBERON:0002616;1.33e-07;53!UBERON:0002791;1.44e-07;32!UBERON:0001869;2.34e-07;32!UBERON:0002619;6.23e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.63e-16,114;UBERON:0001049,5.79e-13,56;UBERON:0005068,5.79e-13,56;UBERON:0006241,5.79e-13,56;UBERON:0007135,5.79e-13,56;UBERON:0000073,4.72e-12,53;UBERON:0002616,4.72e-12,53;UBERON:0002780,1.73e-11,41;UBERON:0001890,1.73e-11,41;UBERON:0003080,1.73e-11,41;UBERON:0006240,1.73e-11,41;UBERON:0000955,7.33e-11,68;UBERON:0006238,7.33e-11,68;UBERON:0003528,7.22e-09,34;UBERON:0002020,7.22e-09,34;UBERON:0001017,9.39e-09,81;UBERON:0001893,9.77e-09,34;UBERON:0002791,3.68e-08,32;UBERON:0002346,4.58e-08,86;UBERON:0001869,4.66e-08,32;UBERON:0001016,5.05e-08,89;UBERON:0003075,1.27e-07,82;UBERON:0007284,1.27e-07,82;UBERON:0002193,4.53e-07,108;UBERON:0002390,4.56e-07,98;UBERON:0003061,4.56e-07,98;UBERON:0002619,4.60e-07,22;UBERON:0002405,5.54e-07,93 | |||
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| ||
|short_description=p3@PDCD4 | |||
}} | }} |
Latest revision as of 09:16, 16 September 2015
Short description: | p3@PDCD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDCD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000467574_5end |
EntrezGene: | PDCD4 |
HGNC: | 8763 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.35e-14 | 168 |
hematopoietic oligopotent progenitor cell | 1.97e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.97e-13 | 161 |
leukocyte | 3.77e-12 | 136 |
hematopoietic cell | 2.06e-11 | 177 |
myeloid cell | 2.31e-10 | 108 |
common myeloid progenitor | 2.31e-10 | 108 |
myeloid leukocyte | 1.80e-09 | 72 |
hematopoietic lineage restricted progenitor cell | 2.73e-09 | 120 |
nongranular leukocyte | 1.72e-08 | 115 |
granulocyte monocyte progenitor cell | 9.06e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.63e-16 | 114 |
neural tube | 5.79e-13 | 56 |
neural rod | 5.79e-13 | 56 |
future spinal cord | 5.79e-13 | 56 |
neural keel | 5.79e-13 | 56 |
regional part of nervous system | 4.72e-12 | 53 |
regional part of brain | 4.72e-12 | 53 |
regional part of forebrain | 1.73e-11 | 41 |
forebrain | 1.73e-11 | 41 |
anterior neural tube | 1.73e-11 | 41 |
future forebrain | 1.73e-11 | 41 |
brain | 7.33e-11 | 68 |
future brain | 7.33e-11 | 68 |
brain grey matter | 7.22e-09 | 34 |
gray matter | 7.22e-09 | 34 |
central nervous system | 9.39e-09 | 81 |
telencephalon | 9.77e-09 | 34 |
regional part of telencephalon | 3.68e-08 | 32 |
neurectoderm | 4.58e-08 | 86 |
cerebral hemisphere | 4.66e-08 | 32 |
nervous system | 5.05e-08 | 89 |
neural plate | 1.27e-07 | 82 |
presumptive neural plate | 1.27e-07 | 82 |
hemolymphoid system | 4.53e-07 | 108 |
hematopoietic system | 4.56e-07 | 98 |
blood island | 4.56e-07 | 98 |
regional part of cerebral cortex | 4.60e-07 | 22 |
immune system | 5.54e-07 | 93 |