FFCP PHASE1:Hg19::chr10:112404108..112404122,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr10:112404108..112404122,+
|short_description=p3@RBM20
|description=CAGE_peak_3_at_RBM20_5end
|association_with_transcript=-32bp_to_ENST00000369519,ENST000005...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=282996 | |EntrezGene=282996 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27424 | |HGNC=27424 | ||
|UniProt=Q5T481, | |TSSclassifier=strong | ||
|UniProt=Q5T481,F5GXH8 | |||
|association_with_transcript=-32bp_to_ENST00000369519,ENST00000539821,NM_001134363,uc001kzf.2_5end | |||
|cluster_id=chr10:112404108..112404122,+ | |||
|coexpression_cluster_id=C1104 | |||
|description=CAGE_peak_3_at_RBM20_5end | |||
|id=chr10:112404108..112404122,+ | |||
|ontology_enrichment_celltype=CL:0000243!5.26e-07!15;CL:0000125!5.26e-07!15;CL:0000030!5.26e-07!15;CL:0000339!5.26e-07!15 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003104;4.75e-12;31!UBERON:0005062;1.90e-08;4!UBERON:0007284;1.90e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;9.83e-11;22!DOID:2994;9.83e-11;22!DOID:114;3.42e-08;2!DOID:0050615;6.62e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.82e-11,22;DOID:2994,8.82e-11,22;DOID:114,3.20e-08,2;DOID:0050615,6.49e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0000955!2.40e-17!69;UBERON:0006238!2.40e-17!69;UBERON:0001017!6.81e-16!82;UBERON:0005743!1.68e-15!86;UBERON:0000073!1.81e-15!94;UBERON:0001016!1.81e-15!94;UBERON:0007023!2.91e-15!115;UBERON:0002616!6.98e-14!59;UBERON:0002780!1.94e-13!41;UBERON:0001890!1.94e-13!41;UBERON:0006240!1.94e-13!41;UBERON:0001049!2.03e-13!57;UBERON:0005068!2.03e-13!57;UBERON:0006241!2.03e-13!57;UBERON:0007135!2.03e-13!57;UBERON:0003075!2.17e-13!86;UBERON:0007284!2.17e-13!86;UBERON:0002346!3.70e-13!90;UBERON:0003080!6.42e-13!42;UBERON:0001893!2.99e-12!34;UBERON:0001869!3.24e-12!32;UBERON:0002791!7.69e-12!33;UBERON:0002020!2.71e-11!34;UBERON:0003528!2.71e-11!34;UBERON:0003056!7.89e-11!61;UBERON:0000153!1.44e-09!129;UBERON:0007811!1.44e-09!129;UBERON:0000956!2.75e-09!25;UBERON:0000203!2.75e-09!25;UBERON:0000033!5.79e-09!123;UBERON:0000924!1.20e-08!173;UBERON:0006601!1.20e-08!173;UBERON:0004121!1.24e-08!169;UBERON:0000119!3.34e-08!312;UBERON:0000483!3.74e-08!309;UBERON:0000481!4.75e-07!347;UBERON:0001950!4.90e-07!20;UBERON:0002619!5.15e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;3.48e-11;3!UBERON:0003978;3.85e-11;3!UBERON:0000946;3.85e-11;3!UBERON:0007100;8.19e-10;25!UBERON:0002081;4.91e-08;2!UBERON:0002133;7.13e-08;2!UBERON:0001905;3.23e-07;2!UBERON:0002757;3.23e-07;2!UBERON:0010134;3.23e-07;2!UBERON:0005408;3.23e-07;2!UBERON:0001899;3.23e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,3.67e-11,3;UBERON:0003978,4.20e-11,3;UBERON:0009751,4.20e-11,3;UBERON:0000946,4.20e-11,3;UBERON:0002523,4.20e-11,3;UBERON:0005983,4.20e-11,3;UBERON:0002165,4.20e-11,3;UBERON:0002062,4.20e-11,3;UBERON:0007280,4.20e-11,3;UBERON:0007100,5.98e-09,27;UBERON:0002081,5.18e-08,2;UBERON:0010227,5.18e-08,2;UBERON:0002133,7.77e-08,2;UBERON:0003103,1.67e-07,68;UBERON:0001905,2.46e-07,2;UBERON:0002757,2.46e-07,2;UBERON:0010134,2.46e-07,2;UBERON:0005408,2.46e-07,2;UBERON:0001899,2.46e-07,2 | |||
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| ||
|short_description=p3@RBM20 | |||
}} | }} |
Latest revision as of 09:03, 16 September 2015
Short description: | p3@RBM20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RBM20_5end |
Coexpression cluster: | C1104_heart_maxillary_teratocarcinoma_left_neuroblastoma_small_medulloblastoma |
Association with transcript: | -32bp_to_ENST00000369519, ENST00000539821, NM_001134363, uc001kzf.2_5end |
EntrezGene: | RBM20 |
HGNC: | 27424 |
UniProt: | Q5T481F5GXH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 3.67e-11 | 3 |
valve | 4.20e-11 | 3 |
cardiac mesenchyme | 4.20e-11 | 3 |
cardial valve | 4.20e-11 | 3 |
tunica intima | 4.20e-11 | 3 |
heart layer | 4.20e-11 | 3 |
endocardium | 4.20e-11 | 3 |
endocardial cushion | 4.20e-11 | 3 |
presumptive endocardium | 4.20e-11 | 3 |
primary circulatory organ | 5.98e-09 | 27 |
cardiac atrium | 5.18e-08 | 2 |
future cardiac atrium | 5.18e-08 | 2 |
atrioventricular valve | 7.77e-08 | 2 |
compound organ | 1.67e-07 | 68 |
pineal body | 2.46e-07 | 2 |
regional part of epithalamus | 2.46e-07 | 2 |
secretory circumventricular organ | 2.46e-07 | 2 |
circumventricular organ | 2.46e-07 | 2 |
epithalamus | 2.46e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.82e-11 | 22 |
germ cell cancer | 8.82e-11 | 22 |
heart disease | 3.20e-08 | 2 |
respiratory system cancer | 6.49e-07 | 16 |