FFCP PHASE1:Hg19::chr15:52043631..52043657,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=256586 | |EntrezGene=256586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28571 | |HGNC=28571 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV50 | |UniProt=Q8IV50 | ||
|association_with_transcript=0bp_to_ENST00000558126,NM_001143917,uc002abj.2_5end | |association_with_transcript=0bp_to_ENST00000558126,NM_001143917,uc002abj.2_5end | ||
|cluster_id=chr15:52043631..52043657,- | |||
|coexpression_cluster_id=C78 | |||
|description=CAGE_peak_5_at_LYSMD2_5end | |description=CAGE_peak_5_at_LYSMD2_5end | ||
|id=chr15:52043631..52043657,- | |id=chr15:52043631..52043657,- | ||
|ontology_enrichment_celltype=CL:0000838!6.64e-25!52;CL:0000945!9.93e-25!24;CL:0000826!9.93e-25!24;CL:0000542!2.93e-24!53;CL:0000051!2.93e-24!53;CL:0000236!1.97e-23!14;CL:0002087!4.75e-11!119;CL:0002031!3.83e-08!124;CL:0000738!5.10e-08!140;CL:0000625!5.75e-08!11 | |ontology_enrichment_celltype=CL:0000838!6.64e-25!52;CL:0000945!9.93e-25!24;CL:0000826!9.93e-25!24;CL:0000542!2.93e-24!53;CL:0000051!2.93e-24!53;CL:0000236!1.97e-23!14;CL:0002087!4.75e-11!119;CL:0002031!3.83e-08!124;CL:0000738!5.10e-08!140;CL:0000625!5.75e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000945;7.05e-72;24!CL:0000236;3.23e-50;13!CL:0000542;1.11e-23;53!CL:0000946;1.13e-11;1!CL:0000786;1.13e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.95e-72,24;CL:0000826,5.95e-72,24;CL:0000236,8.15e-59,14;CL:0000838,2.75e-32,52;CL:0000542,1.21e-31,53;CL:0000051,1.21e-31,53;CL:0002087,1.94e-13,115;CL:0002031,8.38e-13,120;CL:0000946,6.97e-12,1;CL:0000786,6.97e-12,1;CL:0000980,6.97e-12,1;CL:0000738,4.44e-11,136;CL:0002032,4.62e-09,161;CL:0000837,4.62e-09,161;CL:0000037,1.33e-08,168;CL:0000988,4.56e-08,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.11e-23;53!UBERON:0001045;4.78e-12;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;4.78e-12;1!DOID:0050177;4.78e-12;1!DOID:0050427;4.78e-12;1!DOID:0060058;2.20e-10;10!DOID:4362;2.36e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.65e-12,1;DOID:0050177,3.65e-12,1;DOID:0050427,3.65e-12,1;DOID:0060058,2.20e-10,10;DOID:4362,2.57e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.95e-17!115;UBERON:0001049!9.68e-14!57;UBERON:0005068!9.68e-14!57;UBERON:0006241!9.68e-14!57;UBERON:0007135!9.68e-14!57;UBERON:0002616!6.77e-12!59;UBERON:0002020!1.09e-10!34;UBERON:0003528!1.09e-10!34;UBERON:0002780!1.47e-10!41;UBERON:0001890!1.47e-10!41;UBERON:0006240!1.47e-10!41;UBERON:0003080!3.36e-10!42;UBERON:0000955!6.42e-10!69;UBERON:0006238!6.42e-10!69;UBERON:0001869!6.52e-10!32;UBERON:0001893!4.04e-09!34;UBERON:0001017!5.80e-09!82;UBERON:0002791!2.45e-08!33;UBERON:0005743!3.02e-08!86;UBERON:0002346!7.67e-08!90;UBERON:0003075!1.06e-07!86;UBERON:0007284!1.06e-07!86;UBERON:0002619!3.88e-07!22;UBERON:0002308!5.39e-07!9;UBERON:0000125!5.39e-07!9;UBERON:0000073!7.13e-07!94;UBERON:0001016!7.13e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;4.78e-12;1!UBERON:0001153;4.78e-12;1!UBERON:0009854;4.78e-12;1!UBERON:0000002;6.16e-08;6!UBERON:0001560;6.16e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,6.26e-12,1;UBERON:0001153,6.26e-12,1;UBERON:0001045,6.26e-12,1;UBERON:0000002,6.60e-08,6;UBERON:0001560,6.60e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40855682553327,7.53496932183334,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,2.73069305631066,2.66852776159066,2.56038133539904,1.60158394814405,1.72425731986345,0.661044872784862,0.954053754535364,1.70763890732835,1.76171156811282,0.382273228125229,0,0,0,0.393419540227666,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0.444859689486181,0,0,0,0,0.34362744548263,0,0,0.651083453856419,0,0.451725357233318,0.511946444617674,0,0.473554504088034,0,0.403213486449465,0.802320587350522,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,2.48655523978033,1.51159648712566,0,0.246169610922139,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.120596438625408,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451191321234361,0.392125068635479,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0.802577647298789,0.234264445725339,0.364909578431332,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0.514784993585894,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0342636508924,0.13223260174269,0,0,0,0,0,0.496166021811951,0,26.6725790454162,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.248385611765534,0,0,0,0,0,0.936669811613763,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.321146125482298,0,0,0.41023272848151,0,0.345786262321089,0.161475645631851,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.380494861163441,0,0,0,0.351742488719241,0,0.535701835878287,0,0,0.455324382702595,0,1.95897778844825,0,0.40781839786099,0.197318320688547,0,0,0,0.628462359664008,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,2.80727356154527,0.198950775161368,0,0,0,1.81155412280008,0.154348316215889,0,1.88126918544609,0,0.471353094203252,0.196308467114945,0,0,0,0.375935671919414,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0.23806443146374,0.129177819672012,0,0,0,0,0,0,0.673520530145875,0,0.332660356546013,0.162806537221949,0,0,0,0,0,0,0,0.201273793591026,2.8851164307291 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40855682553327,7.53496932183334,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,2.73069305631066,2.66852776159066,2.56038133539904,1.60158394814405,1.72425731986345,0.661044872784862,0.954053754535364,1.70763890732835,1.76171156811282,0.382273228125229,0,0,0,0.393419540227666,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0.444859689486181,0,0,0,0,0.34362744548263,0,0,0.651083453856419,0,0.451725357233318,0.511946444617674,0,0.473554504088034,0,0.403213486449465,0.802320587350522,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,2.48655523978033,1.51159648712566,0,0.246169610922139,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.120596438625408,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451191321234361,0.392125068635479,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0.802577647298789,0.234264445725339,0.364909578431332,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0.514784993585894,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0342636508924,0.13223260174269,0,0,0,0,0,0.496166021811951,0,26.6725790454162,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.248385611765534,0,0,0,0,0,0.936669811613763,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.321146125482298,0,0,0.41023272848151,0,0.345786262321089,0.161475645631851,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.380494861163441,0,0,0,0.351742488719241,0,0.535701835878287,0,0,0.455324382702595,0,1.95897778844825,0,0.40781839786099,0.197318320688547,0,0,0,0.628462359664008,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,2.80727356154527,0.198950775161368,0,0,0,1.81155412280008,0.154348316215889,0,1.88126918544609,0,0.471353094203252,0.196308467114945,0,0,0,0.375935671919414,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0.23806443146374,0.129177819672012,0,0,0,0,0,0,0.673520530145875,0,0.332660356546013,0.162806537221949,0,0,0,0,0,0,0,0.201273793591026,2.8851164307291 | ||
|short_description=p5@LYSMD2 | |short_description=p5@LYSMD2 | ||
}} | }} |
Latest revision as of 01:20, 18 September 2015
Short description: | p5@LYSMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LYSMD2_5end |
Coexpression cluster: | C78_lymphoma_plasma_tonsil_appendix_lymph_seminal_trachea |
Association with transcript: | 0bp_to_ENST00000558126, NM_001143917, uc002abj.2_5end |
EntrezGene: | LYSMD2 |
HGNC: | 28571 |
UniProt: | Q8IV50 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.95e-72 | 24 |
pro-B cell | 5.95e-72 | 24 |
B cell | 8.15e-59 | 14 |
lymphoid lineage restricted progenitor cell | 2.75e-32 | 52 |
lymphocyte | 1.21e-31 | 53 |
common lymphoid progenitor | 1.21e-31 | 53 |
nongranular leukocyte | 1.94e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 8.38e-13 | 120 |
antibody secreting cell | 6.97e-12 | 1 |
plasma cell | 6.97e-12 | 1 |
plasmablast | 6.97e-12 | 1 |
leukocyte | 4.44e-11 | 136 |
hematopoietic oligopotent progenitor cell | 4.62e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.62e-09 | 161 |
hematopoietic stem cell | 1.33e-08 | 168 |
hematopoietic cell | 4.56e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 6.26e-12 | 1 |
caecum | 6.26e-12 | 1 |
midgut | 6.26e-12 | 1 |
uterine cervix | 6.60e-08 | 6 |
neck of organ | 6.60e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.65e-12 | 1 |
monogenic disease | 3.65e-12 | 1 |
xeroderma pigmentosum | 3.65e-12 | 1 |
lymphoma | 2.20e-10 | 10 |
cervical cancer | 2.57e-09 | 5 |