FFCP PHASE1:Hg19::chr10:102106982..102107015,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:102106982..102107015,+
|short_description=p1@SCD
|description=CAGE_peak_1_at_SCD_5end
|association_with_transcript=101bp_to_ENST00000370355_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6319 | |EntrezGene=6319 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10571 | |HGNC=10571 | ||
|TSSclassifier=strong | |||
|UniProt=O00767 | |UniProt=O00767 | ||
|association_with_transcript=101bp_to_ENST00000370355_5end | |||
|cluster_id=chr10:102106982..102107015,+ | |||
|coexpression_cluster_id=C2969 | |||
|description=CAGE_peak_1_at_SCD_5end | |||
|id=chr10:102106982..102107015,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.97e-18!254;CL:0000220!3.30e-11!246;CL:0000221!4.45e-11!71;CL:0002321!4.66e-11!248;CL:0002077!1.47e-07!33;CL:0000548!1.52e-07!679;CL:0000004!1.52e-07!679;CL:0000255!1.52e-07!679;CL:0000223!1.89e-07!59;CL:0000012!3.79e-07!682;CL:0000133!4.57e-07!59;CL:0000333!5.25e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0002077;4.05e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.54e-18,253;CL:0002321,2.44e-11,250;CL:0000221,2.53e-11,72;CL:0002077,8.38e-08,34;CL:0000223,3.10e-07,58;CL:0000133,4.53e-07,59;CL:0000333,5.21e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.92e-11!235;DOID:14566!1.93e-11!239;DOID:0050687!3.30e-09!143;DOID:305!1.71e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.88e-11,235;DOID:14566,1.90e-11,239;DOID:0050687,3.25e-09,143;DOID:305,1.70e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000475!4.56e-18!365;UBERON:0004121!1.22e-17!169;UBERON:0000924!3.02e-17!173;UBERON:0006601!3.02e-17!173;UBERON:0000033!1.37e-14!123;UBERON:0000481!2.02e-13!347;UBERON:0000153!1.23e-12!129;UBERON:0007811!1.23e-12!129;UBERON:0000064!4.36e-12!219;UBERON:0000119!5.22e-12!312;UBERON:0000483!4.46e-11!309;UBERON:0000073!7.18e-09!94;UBERON:0001016!7.18e-09!94;UBERON:0005743!6.38e-08!86;UBERON:0000063!9.20e-08!97;UBERON:0001017!1.04e-07!82;UBERON:0001444!1.04e-07!48;UBERON:0004119!1.17e-07!169;UBERON:0000925!1.17e-07!169;UBERON:0006595!1.17e-07!169;UBERON:0000477!2.07e-07!286;UBERON:0005085!2.24e-07!29;UBERON:0003075!2.74e-07!86;UBERON:0007284!2.74e-07!86;UBERON:0000955!3.96e-07!69;UBERON:0006238!3.96e-07!69;UBERON:0001801!4.64e-07!14;UBERON:0005177!4.90e-07!107;UBERON:0002346!5.68e-07!90;UBERON:0001048!6.87e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0001801;4.61e-07;14!UBERON:0010371;7.23e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.53e-17,171;UBERON:0000924,3.53e-17,171;UBERON:0006601,3.53e-17,171;UBERON:0011216,5.46e-13,223;UBERON:0000119,1.62e-12,309;UBERON:0010371,1.22e-11,104;UBERON:0000483,1.46e-11,306;UBERON:0001016,6.99e-09,89;UBERON:0000033,1.34e-08,56;UBERON:0001444,3.67e-08,49;UBERON:0005085,3.95e-08,31;UBERON:0001017,6.22e-08,81;UBERON:0003075,7.57e-08,82;UBERON:0007284,7.57e-08,82;UBERON:0002346,1.72e-07,86;UBERON:0000955,2.32e-07,68;UBERON:0006238,2.32e-07,68;UBERON:0010314,3.67e-07,132;UBERON:0004119,3.88e-07,160;UBERON:0000925,3.88e-07,160;UBERON:0006595,3.88e-07,160;UBERON:0001801,4.60e-07,14;UBERON:0001048,5.47e-07,160;UBERON:0000019,7.46e-07,20;UBERON:0000047,7.46e-07,20;UBERON:0010312,7.46e-07,20;UBERON:0004088,7.46e-07,20;UBERON:0010230,7.46e-07,20;UBERON:0003072,7.46e-07,20;UBERON:0004128,7.46e-07,20;UBERON:0003071,7.46e-07,20 | |||
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| ||
|short_description=p1@SCD | |||
}} | }} |
Latest revision as of 20:28, 15 September 2015
Short description: | p1@SCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCD_5end |
Coexpression cluster: | C2969_Melanocyte_Meningeal_Fibroblast_gall_breast_glioblastoma_melanoma |
Association with transcript: | 101bp_to_ENST00000370355_5end |
EntrezGene: | SCD |
HGNC: | 10571 |
UniProt: | O00767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.54e-18 | 253 |
embryonic cell | 2.44e-11 | 250 |
ectodermal cell | 2.53e-11 | 72 |
ecto-epithelial cell | 8.38e-08 | 34 |
endodermal cell | 3.10e-07 | 58 |
neurectodermal cell | 4.53e-07 | 59 |
migratory neural crest cell | 5.21e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.53e-17 | 171 |
ectoderm | 3.53e-17 | 171 |
presumptive ectoderm | 3.53e-17 | 171 |
organ system subdivision | 5.46e-13 | 223 |
cell layer | 1.62e-12 | 309 |
ecto-epithelium | 1.22e-11 | 104 |
epithelium | 1.46e-11 | 306 |
nervous system | 6.99e-09 | 89 |
head | 1.34e-08 | 56 |
subdivision of head | 3.67e-08 | 49 |
ectodermal placode | 3.95e-08 | 31 |
central nervous system | 6.22e-08 | 81 |
neural plate | 7.57e-08 | 82 |
presumptive neural plate | 7.57e-08 | 82 |
neurectoderm | 1.72e-07 | 86 |
brain | 2.32e-07 | 68 |
future brain | 2.32e-07 | 68 |
structure with developmental contribution from neural crest | 3.67e-07 | 132 |
endoderm-derived structure | 3.88e-07 | 160 |
endoderm | 3.88e-07 | 160 |
presumptive endoderm | 3.88e-07 | 160 |
anterior segment of eyeball | 4.60e-07 | 14 |
primordium | 5.47e-07 | 160 |
camera-type eye | 7.46e-07 | 20 |
simple eye | 7.46e-07 | 20 |
immature eye | 7.46e-07 | 20 |
ocular region | 7.46e-07 | 20 |
eyeball of camera-type eye | 7.46e-07 | 20 |
optic cup | 7.46e-07 | 20 |
optic vesicle | 7.46e-07 | 20 |
eye primordium | 7.46e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.88e-11 | 235 |
disease of cellular proliferation | 1.90e-11 | 239 |
cell type cancer | 3.25e-09 | 143 |
carcinoma | 1.70e-07 | 106 |