FFCP PHASE1:Mm9::chr6:56873921..56873944,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=107569 | |EntrezGene=107569 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D020 | |UniProt=Q9D020 | ||
|association_with_transcript=0bp_to_ENSMUST00000031793,NM_026004,uc009cbr.2_5end | |association_with_transcript=0bp_to_ENSMUST00000031793,NM_026004,uc009cbr.2_5end | ||
|cluster_id=chr6:56873921..56873944,- | |||
|description=CAGE_peak_3_at_Nt5c3_5end | |description=CAGE_peak_3_at_Nt5c3_5end | ||
|id=chr6:56873921..56873944,- | |id=chr6:56873921..56873944,- | ||
|ontology_enrichment_celltype=CL:0000117!2.03e-15!23;CL:0000337!2.03e-15!23;CL:0000540!2.87e-11!33;CL:0000047!2.87e-11!33;CL:0000031!2.87e-11!33;CL:0000404!2.87e-11!33;CL:0000393!1.04e-08!39;CL:0000211!1.04e-08!39 | |ontology_enrichment_celltype=CL:0000117!2.03e-15!23;CL:0000337!2.03e-15!23;CL:0000540!2.87e-11!33;CL:0000047!2.87e-11!33;CL:0000031!2.87e-11!33;CL:0000404!2.87e-11!33;CL:0000393!1.04e-08!39;CL:0000211!1.04e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.05e-17,23;CL:0000337,7.05e-17,23;CL:0000540,3.17e-11,33;CL:0000047,3.17e-11,33;CL:0000031,3.17e-11,33;CL:0000404,3.17e-11,33;CL:0000393,6.18e-09,39;CL:0000211,6.18e-09,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.79e-17!52;UBERON:0005068!3.79e-17!52;UBERON:0006241!3.79e-17!52;UBERON:0007135!3.79e-17!52;UBERON:0000033!1.63e-16!63;UBERON:0001017!4.10e-16!73;UBERON:0005743!4.10e-16!73;UBERON:0002020!7.06e-16!34;UBERON:0000955!8.42e-16!50;UBERON:0006238!8.42e-16!50;UBERON:0002616!1.83e-15!49;UBERON:0000073!1.85e-15!75;UBERON:0001016!1.85e-15!75;UBERON:0003080!4.53e-14!40;UBERON:0002346!9.08e-14!71;UBERON:0003075!9.08e-14!71;UBERON:0007284!9.08e-14!71;UBERON:0003056!1.05e-13!49;UBERON:0002780!1.51e-13!39;UBERON:0001890!1.51e-13!39;UBERON:0006240!1.51e-13!39;UBERON:0004121!2.45e-13!102;UBERON:0000924!2.45e-13!102;UBERON:0006601!2.45e-13!102;UBERON:0002791!7.53e-13!29;UBERON:0003528!7.53e-13!29;UBERON:0001893!7.53e-13!29;UBERON:0000956!8.53e-09!21;UBERON:0001869!8.53e-09!21;UBERON:0000203!8.53e-09!21;UBERON:0004111!1.04e-08!122;UBERON:0000025!5.11e-08!114;UBERON:0007811!6.21e-08!86 | |ontology_enrichment_uberon=UBERON:0001049!3.79e-17!52;UBERON:0005068!3.79e-17!52;UBERON:0006241!3.79e-17!52;UBERON:0007135!3.79e-17!52;UBERON:0000033!1.63e-16!63;UBERON:0001017!4.10e-16!73;UBERON:0005743!4.10e-16!73;UBERON:0002020!7.06e-16!34;UBERON:0000955!8.42e-16!50;UBERON:0006238!8.42e-16!50;UBERON:0002616!1.83e-15!49;UBERON:0000073!1.85e-15!75;UBERON:0001016!1.85e-15!75;UBERON:0003080!4.53e-14!40;UBERON:0002346!9.08e-14!71;UBERON:0003075!9.08e-14!71;UBERON:0007284!9.08e-14!71;UBERON:0003056!1.05e-13!49;UBERON:0002780!1.51e-13!39;UBERON:0001890!1.51e-13!39;UBERON:0006240!1.51e-13!39;UBERON:0004121!2.45e-13!102;UBERON:0000924!2.45e-13!102;UBERON:0006601!2.45e-13!102;UBERON:0002791!7.53e-13!29;UBERON:0003528!7.53e-13!29;UBERON:0001893!7.53e-13!29;UBERON:0000956!8.53e-09!21;UBERON:0001869!8.53e-09!21;UBERON:0000203!8.53e-09!21;UBERON:0004111!1.04e-08!122;UBERON:0000025!5.11e-08!114;UBERON:0007811!6.21e-08!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.04e-20,54;UBERON:0001049,6.33e-19,52;UBERON:0005068,6.33e-19,52;UBERON:0006241,6.33e-19,52;UBERON:0007135,6.33e-19,52;UBERON:0010314,2.91e-18,92;UBERON:0002346,5.51e-18,64;UBERON:0003075,5.51e-18,64;UBERON:0007284,5.51e-18,64;UBERON:0002020,1.04e-17,34;UBERON:0001017,1.92e-17,73;UBERON:0010371,2.50e-16,73;UBERON:0001016,3.28e-16,75;UBERON:0004121,8.26e-16,95;UBERON:0000924,8.26e-16,95;UBERON:0006601,8.26e-16,95;UBERON:0000955,1.40e-15,47;UBERON:0006238,1.40e-15,47;UBERON:0003080,2.80e-15,40;UBERON:0002616,3.24e-15,46;UBERON:0003056,3.89e-15,49;UBERON:0002780,1.06e-14,39;UBERON:0001890,1.06e-14,39;UBERON:0006240,1.06e-14,39;UBERON:0003528,2.38e-14,29;UBERON:0002791,2.38e-14,29;UBERON:0001893,2.38e-14,29;UBERON:0000956,7.53e-10,21;UBERON:0001869,7.53e-10,21;UBERON:0000203,7.53e-10,21;UBERON:0004111,5.29e-09,122;UBERON:0000025,3.09e-08,114;UBERON:0002619,2.94e-07,17 | |||
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| ||
|short_description=p3@Nt5c3 | |short_description=p3@Nt5c3 | ||
}} | }} |
Latest revision as of 14:34, 1 October 2015
Short description: | p3@Nt5c3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nt5c3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000031793, NM_026004, uc009cbr.2_5end |
EntrezGene: | Nt5c3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.05e-17 | 23 |
neuroblast (sensu Vertebrata) | 7.05e-17 | 23 |
neuron | 3.17e-11 | 33 |
neuronal stem cell | 3.17e-11 | 33 |
neuroblast | 3.17e-11 | 33 |
electrically signaling cell | 3.17e-11 | 33 |
electrically responsive cell | 6.18e-09 | 39 |
electrically active cell | 6.18e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.04e-20 | 54 |
neural tube | 6.33e-19 | 52 |
neural rod | 6.33e-19 | 52 |
future spinal cord | 6.33e-19 | 52 |
neural keel | 6.33e-19 | 52 |
structure with developmental contribution from neural crest | 2.91e-18 | 92 |
neurectoderm | 5.51e-18 | 64 |
neural plate | 5.51e-18 | 64 |
presumptive neural plate | 5.51e-18 | 64 |
gray matter | 1.04e-17 | 34 |
central nervous system | 1.92e-17 | 73 |
ecto-epithelium | 2.50e-16 | 73 |
nervous system | 3.28e-16 | 75 |
ectoderm-derived structure | 8.26e-16 | 95 |
ectoderm | 8.26e-16 | 95 |
presumptive ectoderm | 8.26e-16 | 95 |
brain | 1.40e-15 | 47 |
future brain | 1.40e-15 | 47 |
anterior neural tube | 2.80e-15 | 40 |
regional part of brain | 3.24e-15 | 46 |
pre-chordal neural plate | 3.89e-15 | 49 |
regional part of forebrain | 1.06e-14 | 39 |
forebrain | 1.06e-14 | 39 |
future forebrain | 1.06e-14 | 39 |
brain grey matter | 2.38e-14 | 29 |
regional part of telencephalon | 2.38e-14 | 29 |
telencephalon | 2.38e-14 | 29 |
cerebral cortex | 7.53e-10 | 21 |
cerebral hemisphere | 7.53e-10 | 21 |
pallium | 7.53e-10 | 21 |
anatomical conduit | 5.29e-09 | 122 |
tube | 3.09e-08 | 114 |
regional part of cerebral cortex | 2.94e-07 | 17 |