FFCP PHASE1:Mm9::chr6:149357495..149357560,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12121 | |EntrezGene=12121 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=826 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BR07 | |UniProt=Q8BR07 | ||
|association_with_transcript=0bp_to_ENSMUST00000086829,ENSMUST00000111513_5end | |association_with_transcript=0bp_to_ENSMUST00000086829,ENSMUST00000111513_5end | ||
|cluster_id=chr6:149357495..149357560,+ | |||
|description=CAGE_peak_1_at_Bicd1_5end | |description=CAGE_peak_1_at_Bicd1_5end | ||
|id=chr6:149357495..149357560,+ | |id=chr6:149357495..149357560,+ | ||
|ontology_enrichment_celltype=CL:0000540!3.11e-16!33;CL:0000047!3.11e-16!33;CL:0000031!3.11e-16!33;CL:0000404!3.11e-16!33;CL:0000393!3.83e-16!39;CL:0000211!3.83e-16!39;CL:0000221!3.53e-11!44;CL:0000133!3.53e-11!44;CL:0000117!6.31e-11!23;CL:0000337!6.31e-11!23;CL:0002319!9.67e-11!43;CL:0000055!1.41e-10!50 | |ontology_enrichment_celltype=CL:0000540!3.11e-16!33;CL:0000047!3.11e-16!33;CL:0000031!3.11e-16!33;CL:0000404!3.11e-16!33;CL:0000393!3.83e-16!39;CL:0000211!3.83e-16!39;CL:0000221!3.53e-11!44;CL:0000133!3.53e-11!44;CL:0000117!6.31e-11!23;CL:0000337!6.31e-11!23;CL:0002319!9.67e-11!43;CL:0000055!1.41e-10!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.29e-16,33;CL:0000047,2.29e-16,33;CL:0000031,2.29e-16,33;CL:0000404,2.29e-16,33;CL:0000393,2.83e-16,39;CL:0000211,2.83e-16,39;CL:0000221,2.87e-11,44;CL:0000133,2.87e-11,44;CL:0000117,5.19e-11,23;CL:0000337,5.19e-11,23;CL:0002319,7.95e-11,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.69e-26!75;UBERON:0001016!5.69e-26!75;UBERON:0001017!7.51e-26!73;UBERON:0005743!7.51e-26!73;UBERON:0002346!1.20e-21!71;UBERON:0003075!1.20e-21!71;UBERON:0007284!1.20e-21!71;UBERON:0004121!1.30e-20!102;UBERON:0000924!1.30e-20!102;UBERON:0006601!1.30e-20!102;UBERON:0000033!2.06e-19!63;UBERON:0001049!6.68e-19!52;UBERON:0005068!6.68e-19!52;UBERON:0006241!6.68e-19!52;UBERON:0007135!6.68e-19!52;UBERON:0000955!5.41e-18!50;UBERON:0006238!5.41e-18!50;UBERON:0002616!2.48e-17!49;UBERON:0003056!1.35e-16!49;UBERON:0002020!4.55e-15!34;UBERON:0003080!1.68e-14!40;UBERON:0002780!7.71e-14!39;UBERON:0001890!7.71e-14!39;UBERON:0006240!7.71e-14!39;UBERON:0002791!1.96e-12!29;UBERON:0003528!1.96e-12!29;UBERON:0001893!1.96e-12!29;UBERON:0000956!4.45e-09!21;UBERON:0001869!4.45e-09!21;UBERON:0000203!4.45e-09!21;UBERON:0002619!1.59e-07!17;UBERON:0002021!3.25e-07!10;UBERON:0000411!3.25e-07!10;UBERON:0001950!3.25e-07!10 | |ontology_enrichment_uberon=UBERON:0000073!5.69e-26!75;UBERON:0001016!5.69e-26!75;UBERON:0001017!7.51e-26!73;UBERON:0005743!7.51e-26!73;UBERON:0002346!1.20e-21!71;UBERON:0003075!1.20e-21!71;UBERON:0007284!1.20e-21!71;UBERON:0004121!1.30e-20!102;UBERON:0000924!1.30e-20!102;UBERON:0006601!1.30e-20!102;UBERON:0000033!2.06e-19!63;UBERON:0001049!6.68e-19!52;UBERON:0005068!6.68e-19!52;UBERON:0006241!6.68e-19!52;UBERON:0007135!6.68e-19!52;UBERON:0000955!5.41e-18!50;UBERON:0006238!5.41e-18!50;UBERON:0002616!2.48e-17!49;UBERON:0003056!1.35e-16!49;UBERON:0002020!4.55e-15!34;UBERON:0003080!1.68e-14!40;UBERON:0002780!7.71e-14!39;UBERON:0001890!7.71e-14!39;UBERON:0006240!7.71e-14!39;UBERON:0002791!1.96e-12!29;UBERON:0003528!1.96e-12!29;UBERON:0001893!1.96e-12!29;UBERON:0000956!4.45e-09!21;UBERON:0001869!4.45e-09!21;UBERON:0000203!4.45e-09!21;UBERON:0002619!1.59e-07!17;UBERON:0002021!3.25e-07!10;UBERON:0000411!3.25e-07!10;UBERON:0001950!3.25e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.39e-26,75;UBERON:0001017,4.49e-26,73;UBERON:0002346,2.05e-23,64;UBERON:0003075,2.05e-23,64;UBERON:0007284,2.05e-23,64;UBERON:0004121,2.77e-21,95;UBERON:0000924,2.77e-21,95;UBERON:0006601,2.77e-21,95;UBERON:0000073,2.14e-20,54;UBERON:0010314,1.06e-19,92;UBERON:0001049,3.54e-19,52;UBERON:0005068,3.54e-19,52;UBERON:0006241,3.54e-19,52;UBERON:0007135,3.54e-19,52;UBERON:0010371,6.65e-18,73;UBERON:0003056,9.89e-17,49;UBERON:0000955,1.99e-16,47;UBERON:0006238,1.99e-16,47;UBERON:0002616,8.93e-16,46;UBERON:0002020,3.43e-15,34;UBERON:0003080,1.29e-14,40;UBERON:0002780,5.97e-14,39;UBERON:0001890,5.97e-14,39;UBERON:0006240,5.97e-14,39;UBERON:0003528,1.57e-12,29;UBERON:0002791,1.57e-12,29;UBERON:0001893,1.57e-12,29;UBERON:0000956,3.81e-09,21;UBERON:0001869,3.81e-09,21;UBERON:0000203,3.81e-09,21;UBERON:0002619,1.41e-07,17;UBERON:0002021,2.89e-07,10;UBERON:0000411,2.89e-07,10;UBERON:0001950,2.89e-07,10 | |||
|phase1_expression=11.69086583865,2.79180326111489,5.45999087267443,0,1.00179145989269,7.21880869221126,6.54115393667472,1.16210991097419,0,0,0,0,0,0.174840804837995,0.999329285446988,1.61980213911861,2.09868563438444,0,0.685572168028694,0.42438965179803,7.05859308253879,0.0992909512008853,0,3.51983330145495,3.44113921600755,6.31655160526522,3.87685796543167,5.38678081714723,2.28028103347649,1.76421090831952,3.99114919179548,6.35030673459631,4.92051830067656,0,1.1554064790051,2.49351968037739,3.67504841272264,0,0,0,0,0,0,3.52511090331616,4.1564541800001,6.9747765821439,0,3.2703773457067,1.09843091367236,3.11087838518853,1.25987779462826,1.43752564364972,0.167782606057736,0,0,7.46052364504246,6.01720223871389,21.6582278756526,13.3528864167335,15.869729378161,17.1134478946668,0.338844532069132,0,0,0,0.7104801149461,0.599200221036809,2.30530983192933,15.0349937847293,9.31540974488665,13.4607975264884,15.996455126613,14.7981922437581,12.1265891222804,7.66763768145891,12.8690630125403,35.2370819198044,26.0482169693783,33.4862242498611,13.8480602116704,11.2529801630964,8.33461392890816,17.8677119360884,29.826418331679,26.586895113165,39.4802304534715,33.4573449877892,23.1135312823373,6.13382165998791,6.8014404096107,6.37701875143691,0.860423876981386,0,0.539703191637817,0,0,1.40444420131752,0,0,0,21.4081998060554,0,0,0,1.5154372870785,1.26679932737549,2.52762222507392,2.39786147410026,1.29468941823586,7.42210695324124,3.12273588179045,4.26251669636998,4.15107895060905,3.01445281105245,6.93773372100658,1.38233250462643,1.97755974187499,9.9773556274739,1.76922110389975,1.61766849947409,1.32504911076236,2.42437626567611,0,27.2286141220739,36.4437269855412,1.27728527604296,1.43778149407104,0.599902730993408,1.14363204365758,38.4961943270394,26.0775343606617,19.9790419859454,31.1145533144175,28.8958466783273,34.0772393077679,29.6901511413996,9.47106083807942,1.8661045591514,4.54900965180614,6.31325567659422,6.24578126220978,4.82794419310293,11.343914177737,11.0014517020072,11.3620953582718,13.5800543501941,12.6497328155634,13.7112786491678,1.07783996466421,1.70195472151037,2.99116911078713,2.19195732427575,3.89266148915837,2.089512999133,1.64625709126355,3.18454826909589,0,0.257347907114715,0.284163499395593,2.69263504296152,2.81431271977315,3.6012412292203,4.49814997611899,5.1158700254325,4.31947916084659,2.09280550275367,3.75582761959467,3.85325629811659,3.45575684818309,3.11918181750281,3.16168357228837,3.36259971078264,3.29325172936576,2.41571553768669,31.5434922846191,27.3726268928897,1.98251269790279,3.17340679996253,5.54549451391608,10.4506502337197,9.40732467651281,6.45387278794696,7.56085349072559,6.84812254005213,1.42358718463353,5.10566759644434,3.51869292320377,5.37182474511107,3.31438948102504,3.59527763461689,4.53889904736858,1.7922714592893,0.948339504765408,4.68418901699888,6.76246414038483,4.48032921259691,3.29719228184964,4.69909993265134,4.61626721007078,5.90440591918409,9.57692239832386,5.42947521255922,0.296452627087149,2.00214126859313,1.17935397067922,1.79889689907883,1.01430060694251,0.241177159752417,2.03700681425136,0.575392274901621,0.648540907100142,0.274561413188081,1.43768206527355,0,0.312037673114561,0.252578877947112,0.538192240565737,0.482443521363367,2.03228509183265,3.97931964718018,3.58522948172457,5.7713329163564,5.63256595892405,3.51763140627813,1.90434912708811,2.73187107000918,0.472905432318573,1.55025282754142,1.59454768657487,2.29408640602033,3.10832967358612,2.4590339958857,1.50791283939272,0.54390568381871,0,0.551873492609465,42.0642545768015,36.5700462167674,0,1.26235463602186,27.4492150892143,33.9681707538075,32.098086262187,20.790285421872,25.6218475194753,19.8153571552183,33.1944775373413,32.7326560860669,28.8560077900962,35.3453448063988,21.8587731220734,2.49291845134157,10.9134262766896,12.0428189769951,6.63725691699814,5.09839335925461,3.62788268357701,11.5049098651098,7.97315110778086,12.604841065701,7.49442050187841,6.90714086007261,8.19943970284859,15.1697643809192,23.1920938864997,14.4389760547462,23.8307724027652,8.64293251350289,1.68166288917581,4.50107773566344,9.57637261668277,8.74007206250146,7.24015690649332,3.65357938937519,0.23467170806371,1.48282449604674,7.71849393192367,0.8244312647074,0.484393280087717,1.02531972377865,0.716234064018819,0.164140899745061,4.95517422270746,35.0453820799863,1.70870880797853,2.68302928352189,1.11116716421827,0.753473828018764,0.820165366326151,0.915112692826091,2.71965487990169,3.49878630809145,3.31679937130617,2.86401185404534,5.3777118908793,6.50622294805916,6.26430976766447,4.39085421630384,6.33251434863915,4.04593039154462,5.2898211664215,5.75863072364865,1.03691978633434,0,0,2.54178128274764,2.97825282822776,2.52786544847262,2.58319646955462,2.70329800785245,3.52071715937262,4.03633593016245,3.98465508817701,0.724752362478018,0.864090018773596,0.948033361884535,1.62180172232131,2.67048488628551,1.16928740680016,2.14832034800978,0.993406773906324,1.20195449519969,0.590758108698309,0.504832249740738,0.609654453239999,0.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| ||
|short_description=p1@Bicd1 | |short_description=p1@Bicd1 | ||
}} | }} |
Latest revision as of 23:05, 26 September 2015
Short description: | p1@Bicd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Bicd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:826 |
Association with transcript: | 0bp_to_ENSMUST00000086829, ENSMUST00000111513_5end |
EntrezGene: | Bicd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.29e-16 | 33 |
neuronal stem cell | 2.29e-16 | 33 |
neuroblast | 2.29e-16 | 33 |
electrically signaling cell | 2.29e-16 | 33 |
electrically responsive cell | 2.83e-16 | 39 |
electrically active cell | 2.83e-16 | 39 |
ectodermal cell | 2.87e-11 | 44 |
neurectodermal cell | 2.87e-11 | 44 |
CNS neuron (sensu Vertebrata) | 5.19e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.19e-11 | 23 |
neural cell | 7.95e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.39e-26 | 75 |
central nervous system | 4.49e-26 | 73 |
neurectoderm | 2.05e-23 | 64 |
neural plate | 2.05e-23 | 64 |
presumptive neural plate | 2.05e-23 | 64 |
ectoderm-derived structure | 2.77e-21 | 95 |
ectoderm | 2.77e-21 | 95 |
presumptive ectoderm | 2.77e-21 | 95 |
regional part of nervous system | 2.14e-20 | 54 |
structure with developmental contribution from neural crest | 1.06e-19 | 92 |
neural tube | 3.54e-19 | 52 |
neural rod | 3.54e-19 | 52 |
future spinal cord | 3.54e-19 | 52 |
neural keel | 3.54e-19 | 52 |
ecto-epithelium | 6.65e-18 | 73 |
pre-chordal neural plate | 9.89e-17 | 49 |
brain | 1.99e-16 | 47 |
future brain | 1.99e-16 | 47 |
regional part of brain | 8.93e-16 | 46 |
gray matter | 3.43e-15 | 34 |
anterior neural tube | 1.29e-14 | 40 |
regional part of forebrain | 5.97e-14 | 39 |
forebrain | 5.97e-14 | 39 |
future forebrain | 5.97e-14 | 39 |
brain grey matter | 1.57e-12 | 29 |
regional part of telencephalon | 1.57e-12 | 29 |
telencephalon | 1.57e-12 | 29 |
cerebral cortex | 3.81e-09 | 21 |
cerebral hemisphere | 3.81e-09 | 21 |
pallium | 3.81e-09 | 21 |
regional part of cerebral cortex | 1.41e-07 | 17 |
occipital lobe | 2.89e-07 | 10 |
visual cortex | 2.89e-07 | 10 |
neocortex | 2.89e-07 | 10 |