FFCP PHASE1:Hg19::chr14:55605037..55605051,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3958 | |EntrezGene=3958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6563 | |HGNC=6563 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=275bp_to_ENST00000556263_5end | |association_with_transcript=275bp_to_ENST00000556263_5end | ||
|cluster_id=chr14:55605037..55605051,+ | |||
|coexpression_cluster_id=C1200 | |||
|description=CAGE_peak_7_at_LGALS3_5end | |description=CAGE_peak_7_at_LGALS3_5end | ||
|id=chr14:55605037..55605051,+ | |id=chr14:55605037..55605051,+ | ||
|ontology_enrichment_celltype=CL:0000839!8.11e-21!70;CL:0002194!1.47e-18!63;CL:0000576!1.47e-18!63;CL:0000040!1.47e-18!63;CL:0000559!1.47e-18!63;CL:0000860!3.49e-18!45;CL:0000557!5.32e-18!71;CL:0002057!1.83e-17!42;CL:0002009!3.44e-17!65;CL:0000766!3.63e-16!76 | |ontology_enrichment_celltype=CL:0000839!8.11e-21!70;CL:0002194!1.47e-18!63;CL:0000576!1.47e-18!63;CL:0000040!1.47e-18!63;CL:0000559!1.47e-18!63;CL:0000860!3.49e-18!45;CL:0000557!5.32e-18!71;CL:0002057!1.83e-17!42;CL:0002009!3.44e-17!65;CL:0000766!3.63e-16!76 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.56e-34;33!CL:0002057;6.56e-34;33!CL:0000473;1.68e-30;39!CL:0000234;1.68e-30;39!CL:0000576;8.63e-19;48!CL:0000766;3.61e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,1.35e-36,66;CL:0000473,6.98e-35,48;CL:0000234,6.98e-35,48;CL:0000557,3.19e-34,67;CL:0002194,3.67e-34,59;CL:0000576,3.67e-34,59;CL:0000040,3.67e-34,59;CL:0000559,3.67e-34,59;CL:0002009,1.28e-32,61;CL:0000860,2.66e-31,42;CL:0002057,2.66e-31,42;CL:0000766,6.92e-31,72;CL:0000763,4.80e-17,108;CL:0000049,4.80e-17,108;CL:0002031,4.60e-14,120;CL:0002087,1.22e-11,115;CL:0000738,2.37e-10,136;CL:0000219,6.21e-09,386;CL:0000134,1.05e-08,354;CL:0002320,3.66e-08,361;CL:0002032,1.58e-07,161;CL:0000837,1.58e-07,161;CL:0000048,5.31e-07,427;CL:0000037,8.87e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.23e-22;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.00e-16!80;UBERON:0004765!4.97e-16!101;UBERON:0001434!4.97e-16!101;UBERON:0001474!1.26e-14!86;UBERON:0002204!8.24e-13!167;UBERON:0002390!1.43e-11!102;UBERON:0003061!1.43e-11!102;UBERON:0002193!5.56e-11!112;UBERON:0002405!4.11e-10!115;UBERON:0000926!1.33e-09!448;UBERON:0004120!1.33e-09!448;UBERON:0006603!1.33e-09!448;UBERON:0000480!1.24e-08!626;UBERON:0000062!1.38e-08!511;UBERON:0000468!1.68e-08!659;UBERON:0000467!2.29e-08!625 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.18e-33,76;UBERON:0001474,1.36e-31,82;UBERON:0004765,1.85e-27,90;UBERON:0001434,1.94e-27,100;UBERON:0002405,1.26e-24,93;UBERON:0002390,6.74e-24,98;UBERON:0003061,6.74e-24,98;UBERON:0002193,2.36e-20,108;UBERON:0002204,6.09e-18,167;UBERON:0003081,5.44e-12,203;UBERON:0000926,1.40e-11,315;UBERON:0004120,1.40e-11,315;UBERON:0006603,1.40e-11,315;UBERON:0002384,1.95e-07,371 | |||
|phase1_expression=0.181678379270557,1.49870366723688,0.140954404095971,1.0007329835313,0.446961094427288,1.74467704820074,2.53299878168311,0.631719873426831,0.522371256399677,0,1.39560233594486,0.218441372130172,1.05506791291381,0.495065411840187,0.662794751455832,0,1.20538905604795,0.730310090387373,0,0.123121058076788,0.408001382488506,0.626909442956176,0,0.273748850145768,0.125542639594803,0,0,0,0.393364276848904,0,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,1.20326668482085,0.651032612147555,1.11957737119962,2.91504299417082,0.77272670290256,4.65274364094607,3.77875943688809,2.91100873425379,5.11343881192506,5.34518254428373,3.71647645074124,2.01384674625505,3.58624989140741,1.89185783910868,1.37898272294647,5.80936215225443,0,5.08254316765033,8.18718450173537,3.82029923556644,5.81559395504715,2.56743221660875,2.55734850319616,1.64925650093358,1.99463657621632,3.40979800426155,4.06292934080018,4.53908179752912,1.86846674698672,3.76872997885115,4.17186334736161,2.6062661364614,1.81619850790011,0.736555271975129,5.06339819905415,0.422510572623884,1.06302149982522,0,0.673971786878971,1.05123824989054,0.32145117339416,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0,0,0,1.0247305578054,0.520237390239513,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.12786256184353,0,0,1.30361867064741,0,1.45990461090791,0.0945348171640679,0.443458794925128,0.263504357079378,0.196468613246569,0.364295288292542,0.741568885568859,1.29818957461873,1.0447784237956,1.86141144726411,0,0,0,0,0,0,0.56530794192401,0,0,0,0.258416759169329,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0,0.860509862246441,0.354668382198357,0.560677600142307,0,0.24666754841716,0.311211035399766,0.67355336034844,0.817309515567294,0.302714855289863,0,0.70296429550139,1.5608003841516,0,1.34503812496621,0.469737994575059,0.485618833104395,0.140450806702248,0.816616685019573,0.491337269247072,0.516628905878827,0,1.48360157567134,0,0,0.336672227908132,0.250237039743928,0.277064115484183,0.438977620880838,3.0648779579902,0.751190294532984,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.618315175430633,0.772921620136887,0.558350568994769,0,0.292311015483596,0.252433774244115,0.184099797284599,0.969876340912871,0.355009592516614,0.10075209822764,0,0.193260853163297,0.272746120590835,0,0,0,0,0.10366105501537,0,0,1.56449532329816,1.28648187638577,0,0.928735856063958,1.44375896333917,1.0647612003586,0.842923450390509,0.723033089650446,0.882351781859152,0.217879444092406,0.474541238222193,0.808987848960987,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0.491953754172454,0.171567810298526,0,0,0.301586917234893,0,0,1.03993478527958,0,0,0,0.433099343283221,0.462985512576611,0.951270761172991,1.58040879591855,0.858486162094873,0.738651018262192,0.702012795417713,1.18904929830983,0,0.671928512795438,0,0.358234090811393,0,0,0,0.968532774145487,2.28060927094849,2.16179930125442,4.79721247020244,0.380987365753014,2.67391897890794,1.17217447210047,6.84289784090821,1.54241239054985,1.8020583470635,1.71495859578347,0.112131084345361,0,0,0.258543431515556,0,0.845302752556,0.531876233169741,2.08014873822732,0,0,0,0,0,0,0,0.710783897485092,0,0,0,0.199945982364114,10.9461402577071,4.52031382288914,16.8667151586425,0.239624855491583,0,0,0,2.05476322550383,0.179060963239896,0.448340575974109,0,0,0.128343036279748,0.508189248444927,0,2.31986643833309,0.167516265334349,1.91381625495949,0,0,0,0.24538298343828,0,0.813795071099207,0.207970861530807,2.3195768543631,1.73472656537328,0.35142424497814,0.300946099727719,2.27407504055985,4.1389228517002,0,0.184369168541703,1.04260337361699,0.195801157462741,0.686286847621712,0,0.862856803274467,0,0.606255142892519,1.66435439510497,0,0.248107807818777,0.306923946576125,0.841980283299221,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0.532685175939381,0.328508624055237,0.519254429183621,0.929683027679674,0.604297247958111,1.00253235151642,0.276242966807689,0.574072240823034,2.36718518408732,1.96686622439136,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0.877039506583738,1.0457418040996,0,0,0.650756789328606,0,0,0,0,0.650060246036521,0,0.386682873168488,1.07834031980251,0.460511024178389,0.137836572484531,0.537101224341368,0.870100163485371,0.0852266274161009,0,0.165284915360978,0.384380134730212,0.127612712494584,0.30347334256665,1.39453664789186,0,0,0,0,0,0.18532421910392,0.429374660225974,0,0.632758849437452,0.190630193923825,0.255897791311334,1.71175595213568,0.318203247925937,0,0.359744915166629,0.54907405947211,0,0,0,0.421258456238981,0,0.487426979262569,0,0.409499734223957,0.707027159768564,0,0,0,0.438450885253763,0,0.655894752046633,0,0.6196469961995,0,0,0,0,0,2.11107635297664,2.30506425071931,0,0.699869440489966,0.192444225451024,0,0,0.470719003883896,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| ||
|short_description=p7@LGALS3 | |short_description=p7@LGALS3 | ||
}} | }} |
Latest revision as of 16:15, 24 September 2015
Short description: | p7@LGALS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LGALS3_5end |
Coexpression cluster: | C1200_Monocytederived_Melanocyte_CD14_large_amniotic_Mast_melanoma |
Association with transcript: | 275bp_to_ENST00000556263_5end |
EntrezGene: | LGALS3 |
HGNC: | 6563 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 1.35e-36 | 66 |
defensive cell | 6.98e-35 | 48 |
phagocyte | 6.98e-35 | 48 |
granulocyte monocyte progenitor cell | 3.19e-34 | 67 |
monopoietic cell | 3.67e-34 | 59 |
monocyte | 3.67e-34 | 59 |
monoblast | 3.67e-34 | 59 |
promonocyte | 3.67e-34 | 59 |
macrophage dendritic cell progenitor | 1.28e-32 | 61 |
classical monocyte | 2.66e-31 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.66e-31 | 42 |
myeloid leukocyte | 6.92e-31 | 72 |
myeloid cell | 4.80e-17 | 108 |
common myeloid progenitor | 4.80e-17 | 108 |
hematopoietic lineage restricted progenitor cell | 4.60e-14 | 120 |
nongranular leukocyte | 1.22e-11 | 115 |
leukocyte | 2.37e-10 | 136 |
motile cell | 6.21e-09 | 386 |
mesenchymal cell | 1.05e-08 | 354 |
connective tissue cell | 3.66e-08 | 361 |
hematopoietic oligopotent progenitor cell | 1.58e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.58e-07 | 161 |
multi fate stem cell | 5.31e-07 | 427 |
hematopoietic stem cell | 8.87e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.18e-33 | 76 |
bone element | 1.36e-31 | 82 |
skeletal element | 1.85e-27 | 90 |
skeletal system | 1.94e-27 | 100 |
immune system | 1.26e-24 | 93 |
hematopoietic system | 6.74e-24 | 98 |
blood island | 6.74e-24 | 98 |
hemolymphoid system | 2.36e-20 | 108 |
musculoskeletal system | 6.09e-18 | 167 |
lateral plate mesoderm | 5.44e-12 | 203 |
mesoderm | 1.40e-11 | 315 |
mesoderm-derived structure | 1.40e-11 | 315 |
presumptive mesoderm | 1.40e-11 | 315 |
connective tissue | 1.95e-07 | 371 |