FFCP PHASE1:Hg19::chr13:75884379..75884384,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:75884379..75884384,- | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_at_chr13:75884379..75884384,- | |description=CAGE_peak_at_chr13:75884379..75884384,- | ||
|id=chr13:75884379..75884384,- | |id=chr13:75884379..75884384,- | ||
|ontology_enrichment_celltype=CL:0000990!4.41e-42!8;CL:0000453!3.32e-40!5;CL:0000451!2.60e-34!10;CL:0000840!6.05e-21!5;CL:0001029!6.05e-21!5;CL:0001014!3.30e-17!2;CL:0001016!3.30e-17!2;CL:0000738!4.18e-11!140;CL:0002009!4.16e-10!65;CL:0000763!2.56e-09!112;CL:0000049!2.56e-09!112;CL:0000557!3.94e-09!71;CL:0002032!5.50e-09!165;CL:0000837!5.50e-09!165;CL:0000037!1.67e-08!172;CL:0000566!1.67e-08!172;CL:0002031!4.74e-08!124;CL:0000988!7.08e-08!182 | |ontology_enrichment_celltype=CL:0000990!4.41e-42!8;CL:0000453!3.32e-40!5;CL:0000451!2.60e-34!10;CL:0000840!6.05e-21!5;CL:0001029!6.05e-21!5;CL:0001014!3.30e-17!2;CL:0001016!3.30e-17!2;CL:0000738!4.18e-11!140;CL:0002009!4.16e-10!65;CL:0000763!2.56e-09!112;CL:0000049!2.56e-09!112;CL:0000557!3.94e-09!71;CL:0002032!5.50e-09!165;CL:0000837!5.50e-09!165;CL:0000037!1.67e-08!172;CL:0000566!1.67e-08!172;CL:0002031!4.74e-08!124;CL:0000988!7.08e-08!182 | ||
|ontology_enrichment_celltype_v019=CL:0000453;2.28e-123;5!CL:0000990;7.50e-69;8!CL:0000451;1.91e-56;10!CL:0001014;1.46e-50;2!CL:0001016;1.46e-50;2!CL:0000840;1.22e-17;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,2.28e-123,5;CL:0000990,7.50e-69,8;CL:0000451,1.91e-56,10;CL:0001014,1.46e-50,2;CL:0001016,1.46e-50,2;CL:0000840,1.22e-17,5;CL:0001029,1.22e-17,5;CL:0000763,3.60e-11,108;CL:0000049,3.60e-11,108;CL:0000738,7.06e-09,136;CL:0002032,1.72e-07,161;CL:0000837,1.72e-07,161;CL:0000037,3.55e-07,168;CL:0000988,8.33e-07,177;CL:0002009,8.39e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.29e-09!112;UBERON:0000029!3.88e-09!1;UBERON:0002405!6.53e-09!115;UBERON:0002372!9.17e-09!1;UBERON:0001961!9.17e-09!1;UBERON:0001744!9.17e-09!1;UBERON:0001735!9.17e-09!1;UBERON:0002371!6.14e-08!80;UBERON:0001474!2.79e-07!86;UBERON:0002390!3.05e-07!102;UBERON:0003061!3.05e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.54e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.54e-09,3;UBERON:0004854,1.54e-09,3;UBERON:0009034,1.54e-09,3;UBERON:0002095,1.54e-09,3;UBERON:0004782,1.54e-09,3;UBERON:0003281,1.54e-09,3;UBERON:0009664,1.54e-09,3;UBERON:0002296,1.54e-09,3;UBERON:0005602,1.54e-09,3;UBERON:0001179,1.54e-09,3;UBERON:0006293,1.54e-09,3;UBERON:0002405,8.56e-07,93 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,1.24564449799115,0,0,0,0,0,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0.251932747854276,0,0.615424027305347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.5706398891006,13.1546332274851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.537427795545,14.0836730732165,10.468185232374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29864658627337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,1.24564449799115,0,0,0,0,0,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0.251932747854276,0,0.615424027305347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.5706398891006,13.1546332274851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.537427795545,14.0836730732165,10.468185232374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29864658627337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:75884379..75884384,- | |short_description=p@chr13:75884379..75884384,- | ||
}} | }} |
Latest revision as of 17:04, 24 July 2015
Short description: | p@chr13:75884379..75884384, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:75884379..75884384, - |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 2.28e-123 | 5 |
conventional dendritic cell | 7.50e-69 | 8 |
dendritic cell | 1.91e-56 | 10 |
CD1a-positive Langerhans cell | 1.46e-50 | 2 |
immature CD1a-positive Langerhans cell | 1.46e-50 | 2 |
immature conventional dendritic cell | 1.22e-17 | 5 |
common dendritic progenitor | 1.22e-17 | 5 |
myeloid cell | 3.60e-11 | 108 |
common myeloid progenitor | 3.60e-11 | 108 |
leukocyte | 7.06e-09 | 136 |
hematopoietic oligopotent progenitor cell | 1.72e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.72e-07 | 161 |
hematopoietic stem cell | 3.55e-07 | 168 |
hematopoietic cell | 8.33e-07 | 177 |
macrophage dendritic cell progenitor | 8.39e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.54e-09 | 3 |
gastrointestinal system mesentery | 1.54e-09 | 3 |
stomach region | 1.54e-09 | 3 |
mesentery | 1.54e-09 | 3 |
gastrointestinal system serosa | 1.54e-09 | 3 |
mesentery of stomach | 1.54e-09 | 3 |
gut mesentery | 1.54e-09 | 3 |
dorsal mesentery | 1.54e-09 | 3 |
dorsal mesogastrium | 1.54e-09 | 3 |
peritoneal cavity | 1.54e-09 | 3 |
spleen primordium | 1.54e-09 | 3 |
immune system | 8.56e-07 | 93 |