FFCP PHASE1:Hg19::chr10:112540395..112540399,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:112540395..112540399,+ | |||
|description=CAGE_peak_at_chr10:112540395..112540399,+ | |description=CAGE_peak_at_chr10:112540395..112540399,+ | ||
|id=chr10:112540395..112540399,+ | |id=chr10:112540395..112540399,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000214;2.59e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000214,2.59e-12,3 | |||
|ontology_enrichment_development_v019=UBERON:0004140;5.05e-34;1!UBERON:0005425;5.05e-34;1!UBERON:0003056;2.59e-12;3!UBERON:0005062;1.12e-09;4!UBERON:0007284;1.12e-09;4 | |||
|ontology_enrichment_disease=DOID:114!7.14e-08!2 | |ontology_enrichment_disease=DOID:114!7.14e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:114;9.07e-18;2!DOID:1287;1.44e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.07e-17,2;DOID:1287,1.57e-09,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002146;1.84e-34;1!UBERON:0005623;1.84e-34;1!UBERON:0000941;5.05e-34;1!UBERON:0001785;5.05e-34;1!UBERON:0002464;5.05e-34;1!UBERON:0004904;5.05e-34;1!UBERON:0001021;5.05e-34;1!UBERON:0003714;9.07e-18;2!UBERON:0005162;9.07e-18;2!UBERON:0000122;9.07e-18;2!UBERON:0007100;1.13e-12;25!UBERON:0003978;1.85e-12;3!UBERON:0000946;1.85e-12;3!UBERON:0006915;2.59e-12;3!UBERON:0007616;2.59e-12;3!UBERON:0002217;2.59e-12;3!UBERON:0002018;2.59e-12;3!UBERON:0000948;5.09e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002146,1.84e-34,1;UBERON:0005623,1.84e-34,1;UBERON:0000941,3.61e-34,1;UBERON:0001785,3.61e-34,1;UBERON:0002464,3.61e-34,1;UBERON:0004904,3.61e-34,1;UBERON:0001021,3.61e-34,1;UBERON:0003902,3.61e-34,1;UBERON:0005425,3.61e-34,1;UBERON:0003714,7.67e-18,2;UBERON:0005162,7.67e-18,2;UBERON:0000122,7.67e-18,2;UBERON:0003978,1.85e-12,3;UBERON:0009751,1.85e-12,3;UBERON:0000946,1.85e-12,3;UBERON:0002523,1.85e-12,3;UBERON:0005983,1.85e-12,3;UBERON:0002165,1.85e-12,3;UBERON:0002062,1.85e-12,3;UBERON:0007280,1.85e-12,3;UBERON:0006915,2.59e-12,3;UBERON:0007616,2.59e-12,3;UBERON:0002217,2.59e-12,3;UBERON:0002018,2.59e-12,3;UBERON:0007100,9.63e-12,27;UBERON:0001781,1.32e-09,4;UBERON:0000966,8.02e-07,6;UBERON:0005388,8.02e-07,6;UBERON:0001802,8.02e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577566499444116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.929015875628594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0.1137934482855,0,0,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0.80175617316141,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0,0,0.837847203816763,3.20824593616357,0,0.599037001496973,1.28767814440971,0,1.00775208730089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.785270481251171,0,0,0,0,0,0,0.691743174681154,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0.764467467344097,0,0,0.371807292777007,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0.116241425368125,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0.397901550322736,0,0.79062257427272,0,0.603851374266694,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,1.41994405973866,0.0679914901909147,0,0,0,0,0,0,0,0.633492505057185,0,0,0.36757959813938,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577566499444116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.929015875628594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0.1137934482855,0,0,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0.80175617316141,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0,0,0.837847203816763,3.20824593616357,0,0.599037001496973,1.28767814440971,0,1.00775208730089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.785270481251171,0,0,0,0,0,0,0.691743174681154,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0.764467467344097,0,0,0.371807292777007,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0.116241425368125,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0.397901550322736,0,0.79062257427272,0,0.603851374266694,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,1.41994405973866,0.0679914901909147,0,0,0,0,0,0,0,0.633492505057185,0,0,0.36757959813938,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:112540395..112540399,+ | |short_description=p@chr10:112540395..112540399,+ | ||
}} | }} |
Latest revision as of 10:25, 23 July 2015
Short description: | p@chr10:112540395..112540399, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:112540395..112540399, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 2.59e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
pulmonary valve | 1.84e-34 | 1 |
semi-lunar valve | 1.84e-34 | 1 |
cranial nerve II | 3.61e-34 | 1 |
cranial nerve | 3.61e-34 | 1 |
nerve trunk | 3.61e-34 | 1 |
nerve connecting eye with brain | 3.61e-34 | 1 |
nerve | 3.61e-34 | 1 |
retinal neural layer | 3.61e-34 | 1 |
presumptive neural retina | 3.61e-34 | 1 |
neural tissue | 7.67e-18 | 2 |
multi cell component structure | 7.67e-18 | 2 |
neuron projection bundle | 7.67e-18 | 2 |
valve | 1.85e-12 | 3 |
cardiac mesenchyme | 1.85e-12 | 3 |
cardial valve | 1.85e-12 | 3 |
tunica intima | 1.85e-12 | 3 |
heart layer | 1.85e-12 | 3 |
endocardium | 1.85e-12 | 3 |
endocardial cushion | 1.85e-12 | 3 |
presumptive endocardium | 1.85e-12 | 3 |
stratified squamous epithelium | 2.59e-12 | 3 |
layer of synovial tissue | 2.59e-12 | 3 |
synovial joint | 2.59e-12 | 3 |
synovial membrane of synovial joint | 2.59e-12 | 3 |
primary circulatory organ | 9.63e-12 | 27 |
layer of retina | 1.32e-09 | 4 |
retina | 8.02e-07 | 6 |
photoreceptor array | 8.02e-07 | 6 |
posterior segment of eyeball | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.07e-17 | 2 |
cardiovascular system disease | 1.57e-09 | 4 |