FFCP PHASE1:Mm9::chr4:136158556..136158675,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=99982 | |EntrezGene=99982 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=335 | |||
|TSSclassifier=NA | |||
|UniProt=A3KG93,Q6ZQ88 | |UniProt=A3KG93,Q6ZQ88 | ||
|association_with_transcript=0bp_to_ENSMUST00000105847,ENSMUST00000116273,NM_133872,uc008vig.2_5end | |association_with_transcript=0bp_to_ENSMUST00000105847,ENSMUST00000116273,NM_133872,uc008vig.2_5end | ||
|cluster_id=chr4:136158556..136158675,- | |||
|description=CAGE_peak_1_at_Kdm1a_5end | |description=CAGE_peak_1_at_Kdm1a_5end | ||
|id=chr4:136158556..136158675,- | |id=chr4:136158556..136158675,- | ||
|ontology_enrichment_celltype=CL:0000117!9.21e-08!23;CL:0000337!9.21e-08!23;CL:0000540!1.60e-07!33;CL:0000047!1.60e-07!33;CL:0000031!1.60e-07!33;CL:0000404!1.60e-07!33 | |ontology_enrichment_celltype=CL:0000117!9.21e-08!23;CL:0000337!9.21e-08!23;CL:0000540!1.60e-07!33;CL:0000047!1.60e-07!33;CL:0000031!1.60e-07!33;CL:0000404!1.60e-07!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.21e-08,23;CL:0000337,9.21e-08,23;CL:0000540,1.60e-07,33;CL:0000047,1.60e-07,33;CL:0000031,1.60e-07,33;CL:0000404,1.60e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!3.84e-13!94;UBERON:0007811!1.05e-11!86;UBERON:0003056!4.29e-11!49;UBERON:0000033!4.81e-10!63;UBERON:0002780!1.24e-09!39;UBERON:0001890!1.24e-09!39;UBERON:0006240!1.24e-09!39;UBERON:0004121!1.51e-09!102;UBERON:0000924!1.51e-09!102;UBERON:0006601!1.51e-09!102;UBERON:0003080!2.25e-09!40;UBERON:0000073!2.41e-09!75;UBERON:0001016!2.41e-09!75;UBERON:0001017!2.56e-09!73;UBERON:0005743!2.56e-09!73;UBERON:0001049!5.13e-09!52;UBERON:0005068!5.13e-09!52;UBERON:0006241!5.13e-09!52;UBERON:0007135!5.13e-09!52;UBERON:0000955!4.58e-08!50;UBERON:0006238!4.58e-08!50;UBERON:0002346!6.00e-08!71;UBERON:0003075!6.00e-08!71;UBERON:0007284!6.00e-08!71;UBERON:0002616!6.03e-08!49;UBERON:0002020!7.32e-08!34;UBERON:0002791!8.39e-07!29;UBERON:0003528!8.39e-07!29;UBERON:0001893!8.39e-07!29 | |ontology_enrichment_uberon=UBERON:0000153!3.84e-13!94;UBERON:0007811!1.05e-11!86;UBERON:0003056!4.29e-11!49;UBERON:0000033!4.81e-10!63;UBERON:0002780!1.24e-09!39;UBERON:0001890!1.24e-09!39;UBERON:0006240!1.24e-09!39;UBERON:0004121!1.51e-09!102;UBERON:0000924!1.51e-09!102;UBERON:0006601!1.51e-09!102;UBERON:0003080!2.25e-09!40;UBERON:0000073!2.41e-09!75;UBERON:0001016!2.41e-09!75;UBERON:0001017!2.56e-09!73;UBERON:0005743!2.56e-09!73;UBERON:0001049!5.13e-09!52;UBERON:0005068!5.13e-09!52;UBERON:0006241!5.13e-09!52;UBERON:0007135!5.13e-09!52;UBERON:0000955!4.58e-08!50;UBERON:0006238!4.58e-08!50;UBERON:0002346!6.00e-08!71;UBERON:0003075!6.00e-08!71;UBERON:0007284!6.00e-08!71;UBERON:0002616!6.03e-08!49;UBERON:0002020!7.32e-08!34;UBERON:0002791!8.39e-07!29;UBERON:0003528!8.39e-07!29;UBERON:0001893!8.39e-07!29 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.57e-11,95;UBERON:0000924,1.57e-11,95;UBERON:0006601,1.57e-11,95;UBERON:0003056,4.29e-11,49;UBERON:0010371,6.09e-11,73;UBERON:0002346,3.32e-10,64;UBERON:0003075,3.32e-10,64;UBERON:0007284,3.32e-10,64;UBERON:0002780,1.24e-09,39;UBERON:0001890,1.24e-09,39;UBERON:0006240,1.24e-09,39;UBERON:0003080,2.25e-09,40;UBERON:0001016,2.41e-09,75;UBERON:0001017,2.56e-09,73;UBERON:0000073,4.87e-09,54;UBERON:0001049,5.13e-09,52;UBERON:0005068,5.13e-09,52;UBERON:0006241,5.13e-09,52;UBERON:0007135,5.13e-09,52;UBERON:0000955,2.51e-08,47;UBERON:0006238,2.51e-08,47;UBERON:0002616,3.29e-08,46;UBERON:0002020,7.32e-08,34;UBERON:0003528,8.39e-07,29;UBERON:0002791,8.39e-07,29;UBERON:0001893,8.39e-07,29 | |||
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|phase1_expression=45.1619748835519,16.7508195666893,16.3799726180233,29.3390284967625,25.5456822272637,25.3497700586954,19.3898491694286,18.7228818990286,61.9470377467334,38.8547113694509,32.0177600581694,25.9259516734843,23.9681021903688,21.9425210071683,18.6541466616771,17.412872995525,17.4890469532037,19.0854610041734,24.4063691818215,20.7950929381035,34.3574892210322,22.539045922601,20.373583552837,14.0793332058198,11.6998733344257,14.9300310669905,13.7843838770904,18.9614684763582,16.1519906537918,16.1299283046356,18.181901873735,21.5910428976275,17.8368788399525,0,21.9527231010969,19.2832188615851,17.3543952823014,16.3227335987394,16.4080422349998,16.2292360631877,15.8822501768374,13.6609096991689,15.0508209439658,10.8271263458996,10.239070053171,14.3166466686112,15.6478268869608,23.3286917327078,20.4308149943059,21.970578595394,21.4179225086805,14.3752564364972,26.5096517571223,33.3666585325218,36.970317905671,21.8670520630555,22.349608315223,28.3619650752593,78.9034197352431,71.4137822017244,64.0169717541241,12.5372476865579,10.6715375533337,13.0485459005803,10.8775299882367,9.9467216092454,20.0732074047331,29.2005912044381,105.867094166956,105.979661590377,101.166306410015,32.8498632064374,30.4798586513227,84.7636330567482,121.148675367051,87.325784727952,28.6301290598411,30.5172738023599,28.5708151856613,73.5925485534482,97.4343404365663,75.0115253601734,22.8930059181132,25.8870800614573,31.9348337853533,37.1232017696821,41.7149024741372,58.3430265433191,32.5622631332691,28.6416212804717,16.232411367294,5.16254326188832,9.51959867190851,4.85732872474035,9.09686984426737,4.92829575807069,13.7635531729117,15.3387290320252,12.4697282209377,13.7802434059033,46.9008587856346,37.2146784501522,58.6052051325285,63.9960032837998,28.360326372469,35.977100897464,24.7706978057244,19.7538111913974,17.0899003207133,16.7739617143252,30.5334175108399,22.2259799167863,20.0635482612771,22.3069508017881,22.5770317700553,17.9703225601436,44.2478992244529,13.7369389073916,17.6922110389975,28.6327324406914,24.2925670306433,16.4857586065976,20.5030937339934,37.475942017478,33.5114730901528,18.13745091981,34.0274953596814,29.395233818677,29.6073629080241,26.5129431746536,29.2800385803921,89.5915530564723,33.0266208365325,39.6358958862012,30.5448425502553,31.474805035145,36.1529741668623,22.0200337979865,18.7014841240919,16.2040229032585,42.8096257347295,39.7730640669908,39.4336064273715,45.0607405328788,50.006826876226,49.1956685893823,60.9998226883835,19.9201595469042,51.0896143250836,49.7348990841365,40.4687585577082,33.7561427938465,32.2534809101694,36.5664774848275,33.9540525073107,34.8309966932363,13.3420505589515,10.5512641917033,17.9023004619223,27.5477277472218,32.8336483973535,31.3307986942166,31.487049832833,31.4822770795846,28.8479501099397,24.6485981435432,27.6321603441608,32.2272344933388,28.3042941851186,23.6401148273897,23.2667483396606,19.8831982898452,16.0271584162467,21.8756462579406,24.1833440848746,74.9145578121191,14.2080076683033,10.8424732332053,34.1261200856374,38.5512875288328,34.1498772503547,25.0087570532945,22.4601824283319,20.5443676201564,18.506633400236,22.3990578424655,22.6201687920243,21.6862554524854,23.9805827156518,24.268124033664,19.2362864388478,18.9184209591649,37.5542443887102,40.3297249512343,36.0664754153857,31.3623044881784,31.0323979468201,32.0520696898756,25.9902167580697,18.5988786454299,16.6418651511857,15.6714398180687,10.0793893209631,23.024624588821,22.0146074526787,17.7641068784034,18.8659912891308,19.5353499399458,17.569183772918,17.8371605219503,20.4290385736545,9.88421087477093,18.6898668485561,14.8856379067401,14.9778083094989,10.8608917517258,10.9432422248366,10.6137574699941,19.9533445379933,36.9508252952445,37.80787453455,33.9490171550376,32.6219445121018,30.4861388544105,22.3761022432853,36.0997248536928,26.1674339216277,28.7904096543407,33.1665918807573,19.3358711364571,23.4851575337618,24.7349890174385,9.04747703635634,10.3342079925555,25.0799779239708,22.3508764506833,22.9587343682543,28.4824398419054,19.0164536636943,22.4699125211892,23.6631164562193,27.3307121007647,28.0050417052639,30.5880061379267,28.5182302825464,35.3845663486041,38.457016659115,33.6094236598009,31.2277344577754,33.4174169078679,25.5492153374884,33.2982678857767,39.4186441635654,27.2200702904683,25.2215762845929,36.1743147870922,38.9997388484529,25.2730806872903,21.8523400731772,22.4427657999067,36.4383893367192,35.262771759318,23.1723295950069,17.3820216864699,11.5960469432499,27.8465966770104,35.7461586041477,40.5137461570448,43.5938764347883,48.4401699171399,54.443451728178,42.986885042099,37.6817257178857,42.0161629778147,25.3445444708807,38.1297727554876,20.2886126210565,40.891790729487,33.2616718993565,30.940530488144,27.6943838087277,32.4998981495221,21.2781010739791,23.7344386573452,18.1123133645724,35.0857675537478,22.5937323391048,20.1554248995019,17.3601669205702,14.6418030852174,50.483593708175,37.0871348657694,46.296991224482,15.2747298882418,43.179863123825,32.9377536745495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| ||
|short_description=p1@Kdm1a | |short_description=p1@Kdm1a | ||
}} | }} |
Latest revision as of 13:10, 26 September 2015
Short description: | p1@Kdm1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kdm1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:335 |
Association with transcript: | 0bp_to_ENSMUST00000105847, ENSMUST00000116273, NM_133872, uc008vig.2_5end |
EntrezGene: | Kdm1a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.21e-08 | 23 |
neuroblast (sensu Vertebrata) | 9.21e-08 | 23 |
neuron | 1.60e-07 | 33 |
neuronal stem cell | 1.60e-07 | 33 |
neuroblast | 1.60e-07 | 33 |
electrically signaling cell | 1.60e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.57e-11 | 95 |
ectoderm | 1.57e-11 | 95 |
presumptive ectoderm | 1.57e-11 | 95 |
pre-chordal neural plate | 4.29e-11 | 49 |
ecto-epithelium | 6.09e-11 | 73 |
neurectoderm | 3.32e-10 | 64 |
neural plate | 3.32e-10 | 64 |
presumptive neural plate | 3.32e-10 | 64 |
regional part of forebrain | 1.24e-09 | 39 |
forebrain | 1.24e-09 | 39 |
future forebrain | 1.24e-09 | 39 |
anterior neural tube | 2.25e-09 | 40 |
nervous system | 2.41e-09 | 75 |
central nervous system | 2.56e-09 | 73 |
regional part of nervous system | 4.87e-09 | 54 |
neural tube | 5.13e-09 | 52 |
neural rod | 5.13e-09 | 52 |
future spinal cord | 5.13e-09 | 52 |
neural keel | 5.13e-09 | 52 |
brain | 2.51e-08 | 47 |
future brain | 2.51e-08 | 47 |
regional part of brain | 3.29e-08 | 46 |
gray matter | 7.32e-08 | 34 |
brain grey matter | 8.39e-07 | 29 |
regional part of telencephalon | 8.39e-07 | 29 |
telencephalon | 8.39e-07 | 29 |