FFCP PHASE1:Mm9::chr3:87710530..87710559,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15191 | |EntrezGene=15191 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=E0CXA0 | |UniProt=E0CXA0 | ||
|association_with_transcript=-212bp_to_ENSMUST00000159492_5end | |association_with_transcript=-212bp_to_ENSMUST00000159492_5end | ||
|cluster_id=chr3:87710530..87710559,+ | |||
|description=CAGE_peak_4_at_Hdgf_5end | |description=CAGE_peak_4_at_Hdgf_5end | ||
|id=chr3:87710530..87710559,+ | |id=chr3:87710530..87710559,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.27e-12!63;UBERON:0002616!2.09e-11!49;UBERON:0007811!3.10e-11!86;UBERON:0000955!5.78e-11!50;UBERON:0006238!5.78e-11!50;UBERON:0001049!2.35e-10!52;UBERON:0005068!2.35e-10!52;UBERON:0006241!2.35e-10!52;UBERON:0007135!2.35e-10!52;UBERON:0000073!2.36e-10!75;UBERON:0001016!2.36e-10!75;UBERON:0000153!2.86e-10!94;UBERON:0004121!4.52e-10!102;UBERON:0000924!4.52e-10!102;UBERON:0006601!4.52e-10!102;UBERON:0001017!6.13e-10!73;UBERON:0005743!6.13e-10!73;UBERON:0003056!8.60e-09!49;UBERON:0003080!3.67e-08!40;UBERON:0002780!7.62e-08!39;UBERON:0001890!7.62e-08!39;UBERON:0006240!7.62e-08!39;UBERON:0002346!7.73e-08!71;UBERON:0003075!7.73e-08!71;UBERON:0007284!7.73e-08!71 | |ontology_enrichment_uberon=UBERON:0000033!7.27e-12!63;UBERON:0002616!2.09e-11!49;UBERON:0007811!3.10e-11!86;UBERON:0000955!5.78e-11!50;UBERON:0006238!5.78e-11!50;UBERON:0001049!2.35e-10!52;UBERON:0005068!2.35e-10!52;UBERON:0006241!2.35e-10!52;UBERON:0007135!2.35e-10!52;UBERON:0000073!2.36e-10!75;UBERON:0001016!2.36e-10!75;UBERON:0000153!2.86e-10!94;UBERON:0004121!4.52e-10!102;UBERON:0000924!4.52e-10!102;UBERON:0006601!4.52e-10!102;UBERON:0001017!6.13e-10!73;UBERON:0005743!6.13e-10!73;UBERON:0003056!8.60e-09!49;UBERON:0003080!3.67e-08!40;UBERON:0002780!7.62e-08!39;UBERON:0001890!7.62e-08!39;UBERON:0006240!7.62e-08!39;UBERON:0002346!7.73e-08!71;UBERON:0003075!7.73e-08!71;UBERON:0007284!7.73e-08!71 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.41e-11,95;UBERON:0000924,2.41e-11,95;UBERON:0006601,2.41e-11,95;UBERON:0002616,1.19e-10,46;UBERON:0000955,3.26e-10,47;UBERON:0006238,3.26e-10,47;UBERON:0000073,3.44e-10,54;UBERON:0001049,5.45e-10,52;UBERON:0005068,5.45e-10,52;UBERON:0006241,5.45e-10,52;UBERON:0007135,5.45e-10,52;UBERON:0010371,5.63e-10,73;UBERON:0001016,7.48e-10,75;UBERON:0002346,1.62e-09,64;UBERON:0003075,1.62e-09,64;UBERON:0007284,1.62e-09,64;UBERON:0001017,1.92e-09,73;UBERON:0003056,1.58e-08,49;UBERON:0003080,5.53e-08,40;UBERON:0002780,1.15e-07,39;UBERON:0001890,1.15e-07,39;UBERON:0006240,1.15e-07,39 | |||
|phase1_expression=1.44133962394315,0.697950815278722,0,0,1.00179145989269,1.00727563147134,0.467225281191051,0.516493293766305,5.20918271961167,4.91535505276186,1.19852577757853,1.7549874978974,1.71200729931206,0.961624426608971,0.666219523631325,1.61980213911861,1.39912375625629,1.26184866143295,0.274228867211478,0.84877930359606,15.3928355173436,2.58156473122302,3.91799683708403,1.59992422793407,1.37645568640302,0,0,0.646413698057667,1.33016393619462,0,0.443461021310609,0,0.61506478758457,0,0.577703239502549,0.166234645358492,0.612508068787107,0.418531630736908,0,1.57057123192139,1.76469446409304,0,0.485510353031154,2.26614272356039,1.92616169317078,1.65192076945513,3.12956537739216,5.45062890951116,8.34807494390993,5.8328969722285,3.21968769738334,8.62515386189829,1.51004345451963,2.90144856804538,6.72187598284928,2.05807548828758,1.14613375975503,0.515672092277442,1.21389876515759,3.1739458756322,1.90149421051854,1.0165335962074,6.22506357277798,1.3498495759221,1.97773272513395,3.5524005747305,3.89480143673926,8.06858441175265,2.07379224616955,3.10513658162888,2.73422449756797,3.42781181284564,2.65042249141936,0.979926393719632,1.62937300731002,0.919218786610021,2.20231761998777,2.29837208553338,3.68655679814984,2.50583946687368,2.19570344645783,1.56274011167028,3.07101298901519,3.37657566019008,2.44477196442896,0.883885756421003,1.70846016958924,0.931997229126503,2.19605960666234,3.24957708459178,1.73918693221007,0.860423876981386,4.75979933595425,2.15881276655127,3.24888208723835,0,5.19644354487482,4.94247935476367,2.85764605063156,1.7666978725517,2.39433813620357,2.56652954828636,2.54805239706646,0,1.73192832808971,1.52015919285059,2.02209778005913,4.11061966988616,0.517875767294343,0.29688427812965,0.693941307064543,0.913396434936424,1.61430848079241,0.753613202763113,1.88141931417128,2.51333182659351,0.988779870937496,2.16899035379867,3.5384422077995,3.558870698843,6.40440403535141,2.42437626567611,0,4.9772735491963,3.77004072264219,0.766371165625774,3.59445373517761,1.79970819298022,2.92261522268049,3.14560342750128,2.28750301409313,2.01046963380583,3.65031072403781,3.3243009452943,4.1557608911912,3.0825839982874,1.83310854930569,2.98576729464223,2.27450482590307,3.15662783829711,2.99277018814219,0.919608417733892,2.34080768746954,1.65775299619287,2.24520447199382,2.43416068541215,2.06143794031403,4.39795730256327,1.72454394346274,0.756424320671277,2.11141348996739,1.97276159184817,1.11218899690239,2.43776516565517,3.2925141825271,0.796137067273973,2.1066395619397,2.83082697826187,3.6941254921427,0.828503090142008,1.64168241986767,0.900310307305074,0.946978942340841,1.37734962223183,1.23413690309903,2.32533944750408,1.87791380979733,0.700592054203017,3.12663714835613,0.985004784474571,3.08061476274252,4.23979963533464,2.41505126820156,3.89198614405078,3.36463917702604,4.42489833230923,0.330418782983798,1.32225283331772,1.2797295032114,0.232236671860439,1.28867461322093,1.00841762311671,0.667134131534611,1.14135375667535,0,0.823494773620054,1.25667604400135,0.795825888164603,1.36474860983384,0,1.08069024937347,0.995706366271836,2.0863469104839,1.5994791765362,1.1270773567308,1.4255592949172,0.969762435838129,1.82353131714828,2.21327879934901,2.65698266363284,3.1399745568275,3.94870924549762,0.889357881261447,1.16791574001266,1.17935397067922,0.899448449539415,1.82574109249653,1.68824011826692,2.29163266603278,1.43848068725405,0.810676133875177,0.549122826376163,1.43768206527355,1.86070473834252,1.24815069245824,1.51547326768267,1.25578189465339,2.8946611281802,1.10851914099963,0.37898282354097,1.30371981153621,2.37643120085263,1.17345124144251,1.00503754465089,0.476087281772027,2.34160377429359,1.89162172927429,1.10732344824387,1.43509291791738,1.47476983244164,1.55416483679306,0.723245292907558,0,1.08781136763742,1.96705709207614,0.827810238914197,3.69266356971921,4.10240903072711,3.11476396215683,10.3513080153793,0.94652465824877,1.56175497718655,1.50796378412959,2.62865677747807,1.78238939265915,0.849229592366497,0.809621403349789,2.04579100537918,1.97643888973262,1.28528526568723,1.98716119291576,2.49291845134157,1.14020871547503,1.64970122972535,2.65490276679926,1.21390318077491,2.11626489875326,1.13163047853539,1.47650946440386,0.614870295887855,1.03371317267288,1.81766864738753,1.06949213515416,1.8962205476149,2.10837217149998,1.03135543248187,3.40439605753788,1.98067203434441,1.81102157295856,1.71469628025274,2.30542303734956,2.14042581122485,2.63278432963394,2.43571959291679,2.58138878870081,0.21183207086382,2.20528398054962,2.80306630000516,2.58343082713449,2.47282992205439,2.38744688006273,3.28281799490123,0.874442509889552,3.52308073819968,1.36696704638282,1.44470807574256,2.22233432843654,2.26042148405629,1.50363650493128,0.686334519619568,3.73952545986482,4.19854356970974,3.86959926652387,1.90934123603023,1.10717597753397,1.42323626988794,0.86404272657441,1.04544148007234,1.9652630737156,1.07891477107857,1.32245529160537,2.87931536182433,1.16653475962614,1.86401793926078,102.592114840523,2.69129782879162,1.15820943319968,0.777804753376191,2.32487682259916,2.36538575687089,2.22978753426933,1.95306577265925,2.20204623293993,52.1821700984173,50.1172210888686,1.89606672376907,2.8381530140623,3.18403967210964,2.7283372825337,2.14832034800978,2.18549490259391,2.76449533895928,1.9199638532695,2.22126189885925,1.67654974641,2.11734988787365,1.36441033035653,1.15454209968395,0.818138315270983,4.76133805591944,0.665957860122194,1.97370484540847,2.3503846290971,2.51146472241848,1.68914227906064,1.46521299413812,1.50057865355346,1.00314420807073,4.51801474093653,5.52390283808612,4.01026859407578,2.40594455281163,4.11049511862385,3.0215755895588,3.37511250115903,3.60256962579376,4.53142408984205,2.07104124700728,1.55681021376265,1.19707462020309,1.53660245178721,2.67417388775123,1.67690530102386,1.2869045591501,2.66696073361938,1.44224540067226,2.24643446714271,2.77966932940177,2.28131369901216,0.754505365544305,2.06011316433741,1.79270426733634,1.7230640686684,1.42888107384922,1.39061191133827,1.15745532278223,0.824171801606613,1.03039244094078,2.05721551431249,1.95223386775271,0.953744759789284,1.88950341622027,2.1645157495526,2.03075058940024,2.37806364734604,1.57841826862706,1.90125759384206,1.68342681497322,1.18635018124174,1.87158516513571,0.818462086339379,1.54936841185966,1.73615949883027,1.24905288968973,1.40358965067245,2.57845264857958,2.10417165275728,4.63241980150983,3.94175320554716 | |phase1_expression=1.44133962394315,0.697950815278722,0,0,1.00179145989269,1.00727563147134,0.467225281191051,0.516493293766305,5.20918271961167,4.91535505276186,1.19852577757853,1.7549874978974,1.71200729931206,0.961624426608971,0.666219523631325,1.61980213911861,1.39912375625629,1.26184866143295,0.274228867211478,0.84877930359606,15.3928355173436,2.58156473122302,3.91799683708403,1.59992422793407,1.37645568640302,0,0,0.646413698057667,1.33016393619462,0,0.443461021310609,0,0.61506478758457,0,0.577703239502549,0.166234645358492,0.612508068787107,0.418531630736908,0,1.57057123192139,1.76469446409304,0,0.485510353031154,2.26614272356039,1.92616169317078,1.65192076945513,3.12956537739216,5.45062890951116,8.34807494390993,5.8328969722285,3.21968769738334,8.62515386189829,1.51004345451963,2.90144856804538,6.72187598284928,2.05807548828758,1.14613375975503,0.515672092277442,1.21389876515759,3.1739458756322,1.90149421051854,1.0165335962074,6.22506357277798,1.3498495759221,1.97773272513395,3.5524005747305,3.89480143673926,8.06858441175265,2.07379224616955,3.10513658162888,2.73422449756797,3.42781181284564,2.65042249141936,0.979926393719632,1.62937300731002,0.919218786610021,2.20231761998777,2.29837208553338,3.68655679814984,2.50583946687368,2.19570344645783,1.56274011167028,3.07101298901519,3.37657566019008,2.44477196442896,0.883885756421003,1.70846016958924,0.931997229126503,2.19605960666234,3.24957708459178,1.73918693221007,0.860423876981386,4.75979933595425,2.15881276655127,3.24888208723835,0,5.19644354487482,4.94247935476367,2.85764605063156,1.7666978725517,2.39433813620357,2.56652954828636,2.54805239706646,0,1.73192832808971,1.52015919285059,2.02209778005913,4.11061966988616,0.517875767294343,0.29688427812965,0.693941307064543,0.913396434936424,1.61430848079241,0.753613202763113,1.88141931417128,2.51333182659351,0.988779870937496,2.16899035379867,3.5384422077995,3.558870698843,6.40440403535141,2.42437626567611,0,4.9772735491963,3.77004072264219,0.766371165625774,3.59445373517761,1.79970819298022,2.92261522268049,3.14560342750128,2.28750301409313,2.01046963380583,3.65031072403781,3.3243009452943,4.1557608911912,3.0825839982874,1.83310854930569,2.98576729464223,2.27450482590307,3.15662783829711,2.99277018814219,0.919608417733892,2.34080768746954,1.65775299619287,2.24520447199382,2.43416068541215,2.06143794031403,4.39795730256327,1.72454394346274,0.756424320671277,2.11141348996739,1.97276159184817,1.11218899690239,2.43776516565517,3.2925141825271,0.796137067273973,2.1066395619397,2.83082697826187,3.6941254921427,0.828503090142008,1.64168241986767,0.900310307305074,0.946978942340841,1.37734962223183,1.23413690309903,2.32533944750408,1.87791380979733,0.700592054203017,3.12663714835613,0.985004784474571,3.08061476274252,4.23979963533464,2.41505126820156,3.89198614405078,3.36463917702604,4.42489833230923,0.330418782983798,1.32225283331772,1.2797295032114,0.232236671860439,1.28867461322093,1.00841762311671,0.667134131534611,1.14135375667535,0,0.823494773620054,1.25667604400135,0.795825888164603,1.36474860983384,0,1.08069024937347,0.995706366271836,2.0863469104839,1.5994791765362,1.1270773567308,1.4255592949172,0.969762435838129,1.82353131714828,2.21327879934901,2.65698266363284,3.1399745568275,3.94870924549762,0.889357881261447,1.16791574001266,1.17935397067922,0.899448449539415,1.82574109249653,1.68824011826692,2.29163266603278,1.43848068725405,0.810676133875177,0.549122826376163,1.43768206527355,1.86070473834252,1.24815069245824,1.51547326768267,1.25578189465339,2.8946611281802,1.10851914099963,0.37898282354097,1.30371981153621,2.37643120085263,1.17345124144251,1.00503754465089,0.476087281772027,2.34160377429359,1.89162172927429,1.10732344824387,1.43509291791738,1.47476983244164,1.55416483679306,0.723245292907558,0,1.08781136763742,1.96705709207614,0.827810238914197,3.69266356971921,4.10240903072711,3.11476396215683,10.3513080153793,0.94652465824877,1.56175497718655,1.50796378412959,2.62865677747807,1.78238939265915,0.849229592366497,0.809621403349789,2.04579100537918,1.97643888973262,1.28528526568723,1.98716119291576,2.49291845134157,1.14020871547503,1.64970122972535,2.65490276679926,1.21390318077491,2.11626489875326,1.13163047853539,1.47650946440386,0.614870295887855,1.03371317267288,1.81766864738753,1.06949213515416,1.8962205476149,2.10837217149998,1.03135543248187,3.40439605753788,1.98067203434441,1.81102157295856,1.71469628025274,2.30542303734956,2.14042581122485,2.63278432963394,2.43571959291679,2.58138878870081,0.21183207086382,2.20528398054962,2.80306630000516,2.58343082713449,2.47282992205439,2.38744688006273,3.28281799490123,0.874442509889552,3.52308073819968,1.36696704638282,1.44470807574256,2.22233432843654,2.26042148405629,1.50363650493128,0.686334519619568,3.73952545986482,4.19854356970974,3.86959926652387,1.90934123603023,1.10717597753397,1.42323626988794,0.86404272657441,1.04544148007234,1.9652630737156,1.07891477107857,1.32245529160537,2.87931536182433,1.16653475962614,1.86401793926078,102.592114840523,2.69129782879162,1.15820943319968,0.777804753376191,2.32487682259916,2.36538575687089,2.22978753426933,1.95306577265925,2.20204623293993,52.1821700984173,50.1172210888686,1.89606672376907,2.8381530140623,3.18403967210964,2.7283372825337,2.14832034800978,2.18549490259391,2.76449533895928,1.9199638532695,2.22126189885925,1.67654974641,2.11734988787365,1.36441033035653,1.15454209968395,0.818138315270983,4.76133805591944,0.665957860122194,1.97370484540847,2.3503846290971,2.51146472241848,1.68914227906064,1.46521299413812,1.50057865355346,1.00314420807073,4.51801474093653,5.52390283808612,4.01026859407578,2.40594455281163,4.11049511862385,3.0215755895588,3.37511250115903,3.60256962579376,4.53142408984205,2.07104124700728,1.55681021376265,1.19707462020309,1.53660245178721,2.67417388775123,1.67690530102386,1.2869045591501,2.66696073361938,1.44224540067226,2.24643446714271,2.77966932940177,2.28131369901216,0.754505365544305,2.06011316433741,1.79270426733634,1.7230640686684,1.42888107384922,1.39061191133827,1.15745532278223,0.824171801606613,1.03039244094078,2.05721551431249,1.95223386775271,0.953744759789284,1.88950341622027,2.1645157495526,2.03075058940024,2.37806364734604,1.57841826862706,1.90125759384206,1.68342681497322,1.18635018124174,1.87158516513571,0.818462086339379,1.54936841185966,1.73615949883027,1.24905288968973,1.40358965067245,2.57845264857958,2.10417165275728,4.63241980150983,3.94175320554716 | ||
|short_description=p4@Hdgf | |short_description=p4@Hdgf | ||
}} | }} |
Latest revision as of 19:13, 25 September 2015
Short description: | p4@Hdgf |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Hdgf_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -212bp_to_ENSMUST00000159492_5end |
EntrezGene: | Hdgf |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.41e-11 | 95 |
ectoderm | 2.41e-11 | 95 |
presumptive ectoderm | 2.41e-11 | 95 |
regional part of brain | 1.19e-10 | 46 |
brain | 3.26e-10 | 47 |
future brain | 3.26e-10 | 47 |
regional part of nervous system | 3.44e-10 | 54 |
neural tube | 5.45e-10 | 52 |
neural rod | 5.45e-10 | 52 |
future spinal cord | 5.45e-10 | 52 |
neural keel | 5.45e-10 | 52 |
ecto-epithelium | 5.63e-10 | 73 |
nervous system | 7.48e-10 | 75 |
neurectoderm | 1.62e-09 | 64 |
neural plate | 1.62e-09 | 64 |
presumptive neural plate | 1.62e-09 | 64 |
central nervous system | 1.92e-09 | 73 |
pre-chordal neural plate | 1.58e-08 | 49 |
anterior neural tube | 5.53e-08 | 40 |
regional part of forebrain | 1.15e-07 | 39 |
forebrain | 1.15e-07 | 39 |
future forebrain | 1.15e-07 | 39 |