FFCP PHASE1:Mm9::chr2:61642558..61642595,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=21375 | |EntrezGene=21375 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=76 | |||
|TSSclassifier=NA | |||
|UniProt=Q64336 | |UniProt=Q64336 | ||
|association_with_transcript=48bp_to_ENSMUST00000048934,NM_009322,uc008jvd.1_5end | |association_with_transcript=48bp_to_ENSMUST00000048934,NM_009322,uc008jvd.1_5end | ||
|cluster_id=chr2:61642558..61642595,+ | |||
|description=CAGE_peak_3_at_Tbr1_5end | |description=CAGE_peak_3_at_Tbr1_5end | ||
|id=chr2:61642558..61642595,+ | |id=chr2:61642558..61642595,+ | ||
|ontology_enrichment_celltype=CL:0002609!5.18e-10!6;CL:0000117!5.85e-08!23;CL:0000337!5.85e-08!23 | |ontology_enrichment_celltype=CL:0002609!5.18e-10!6;CL:0000117!5.85e-08!23;CL:0000337!5.85e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0002609,1.54e-13,6;CL:0002608,1.68e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002791!2.95e-26!29;UBERON:0003528!2.95e-26!29;UBERON:0001893!2.95e-26!29;UBERON:0000956!1.41e-23!21;UBERON:0001869!1.41e-23!21;UBERON:0000203!1.41e-23!21;UBERON:0002780!5.09e-22!39;UBERON:0001890!5.09e-22!39;UBERON:0006240!5.09e-22!39;UBERON:0003080!3.08e-21!40;UBERON:0002020!3.84e-21!34;UBERON:0000955!3.98e-19!50;UBERON:0006238!3.98e-19!50;UBERON:0002616!4.20e-18!49;UBERON:0002619!6.94e-18!17;UBERON:0003056!8.78e-17!49;UBERON:0002021!2.71e-14!10;UBERON:0000411!2.71e-14!10;UBERON:0001950!2.71e-14!10;UBERON:0001049!2.90e-14!52;UBERON:0005068!2.90e-14!52;UBERON:0006241!2.90e-14!52;UBERON:0007135!2.90e-14!52;UBERON:0000033!4.23e-14!63;UBERON:0001017!9.37e-12!73;UBERON:0005743!9.37e-12!73;UBERON:0000073!3.47e-11!75;UBERON:0001016!3.47e-11!75;UBERON:0002346!6.84e-09!71;UBERON:0003075!6.84e-09!71;UBERON:0007284!6.84e-09!71;UBERON:0007811!7.04e-08!86 | |ontology_enrichment_uberon=UBERON:0002791!2.95e-26!29;UBERON:0003528!2.95e-26!29;UBERON:0001893!2.95e-26!29;UBERON:0000956!1.41e-23!21;UBERON:0001869!1.41e-23!21;UBERON:0000203!1.41e-23!21;UBERON:0002780!5.09e-22!39;UBERON:0001890!5.09e-22!39;UBERON:0006240!5.09e-22!39;UBERON:0003080!3.08e-21!40;UBERON:0002020!3.84e-21!34;UBERON:0000955!3.98e-19!50;UBERON:0006238!3.98e-19!50;UBERON:0002616!4.20e-18!49;UBERON:0002619!6.94e-18!17;UBERON:0003056!8.78e-17!49;UBERON:0002021!2.71e-14!10;UBERON:0000411!2.71e-14!10;UBERON:0001950!2.71e-14!10;UBERON:0001049!2.90e-14!52;UBERON:0005068!2.90e-14!52;UBERON:0006241!2.90e-14!52;UBERON:0007135!2.90e-14!52;UBERON:0000033!4.23e-14!63;UBERON:0001017!9.37e-12!73;UBERON:0005743!9.37e-12!73;UBERON:0000073!3.47e-11!75;UBERON:0001016!3.47e-11!75;UBERON:0002346!6.84e-09!71;UBERON:0003075!6.84e-09!71;UBERON:0007284!6.84e-09!71;UBERON:0007811!7.04e-08!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.84e-33,21;UBERON:0001869,2.84e-33,21;UBERON:0000203,2.84e-33,21;UBERON:0003528,2.93e-30,29;UBERON:0002791,2.93e-30,29;UBERON:0001893,2.93e-30,29;UBERON:0002619,3.70e-25,17;UBERON:0002020,6.86e-25,34;UBERON:0002780,4.60e-23,39;UBERON:0001890,4.60e-23,39;UBERON:0006240,4.60e-23,39;UBERON:0003080,2.51e-22,40;UBERON:0000955,6.78e-20,47;UBERON:0006238,6.78e-20,47;UBERON:0002021,1.31e-19,10;UBERON:0000411,1.31e-19,10;UBERON:0001950,1.31e-19,10;UBERON:0002616,1.41e-18,46;UBERON:0003056,4.72e-17,49;UBERON:0001049,1.05e-15,52;UBERON:0005068,1.05e-15,52;UBERON:0006241,1.05e-15,52;UBERON:0007135,1.05e-15,52;UBERON:0000073,6.85e-15,54;UBERON:0002346,1.34e-11,64;UBERON:0003075,1.34e-11,64;UBERON:0007284,1.34e-11,64;UBERON:0001017,1.66e-10,73;UBERON:0001016,4.64e-10,75;UBERON:0010371,1.99e-09,73;UBERON:0001954,1.42e-07,7;UBERON:0003022,1.42e-07,7;UBERON:0002421,1.42e-07,7;UBERON:0000349,1.42e-07,7;UBERON:0002600,1.42e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0,0,29.96629795715,29.2962886179769,23.9770455940576,0,0,20.4559634688973,23.1946039864132,24.8189072384706,0,0.510749352340751,0.614426133024974,0.659431438650969,1.09785172322892,1.56274011167028,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457500602818626,3.01570445070875,18.4253779403813,15.3429274398198,0.62336413367868,3.40706652442291,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,6.89460902941206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.85585579706168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6835479080437,14.7304075682297,12.0308057822273,10.8267504876523,12.3314853558716,18.8848474347425,14.8504950050997,15.7612421128477,13.5942722695261,12.9440077937955,0.830298780673413,0.399024873401031,1.70733605754134,1.21553358534147,1.67690530102386,1.47074806760011,1.77797382241292,0.824140228955577,0.320919209591815,1.01078884705519,1.2673964994512,0.754505365544305,1.12369808963859,1.47257850531199,1.83793500657962,0,1.0429589335037,0.38581844092741,0.824171801606613,2.06078488188156,0.685738504770831,1.4198064492747,0.953744759789284,1.45346416632329,1.50575008664529,1.01537529470012,1.46342378298218,1.8414879800649,1.49384525230448,1.12228454331548,1.54225523561426,0.985044823755635,0.818462086339379,0.929621047115796,1.15743966588685,2.49810577937946,0.467863216890817,0.859484216193193,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0,0,29.96629795715,29.2962886179769,23.9770455940576,0,0,20.4559634688973,23.1946039864132,24.8189072384706,0,0.510749352340751,0.614426133024974,0.659431438650969,1.09785172322892,1.56274011167028,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457500602818626,3.01570445070875,18.4253779403813,15.3429274398198,0.62336413367868,3.40706652442291,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,6.89460902941206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.85585579706168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6835479080437,14.7304075682297,12.0308057822273,10.8267504876523,12.3314853558716,18.8848474347425,14.8504950050997,15.7612421128477,13.5942722695261,12.9440077937955,0.830298780673413,0.399024873401031,1.70733605754134,1.21553358534147,1.67690530102386,1.47074806760011,1.77797382241292,0.824140228955577,0.320919209591815,1.01078884705519,1.2673964994512,0.754505365544305,1.12369808963859,1.47257850531199,1.83793500657962,0,1.0429589335037,0.38581844092741,0.824171801606613,2.06078488188156,0.685738504770831,1.4198064492747,0.953744759789284,1.45346416632329,1.50575008664529,1.01537529470012,1.46342378298218,1.8414879800649,1.49384525230448,1.12228454331548,1.54225523561426,0.985044823755635,0.818462086339379,0.929621047115796,1.15743966588685,2.49810577937946,0.467863216890817,0.859484216193193,0,0,0 | ||
|short_description=p3@Tbr1 | |short_description=p3@Tbr1 | ||
}} | }} |
Latest revision as of 20:04, 26 September 2015
Short description: | p3@Tbr1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tbr1_5end |
Coexpression cluster: | MCL_coexpression_mm9:76 |
Association with transcript: | 48bp_to_ENSMUST00000048934, NM_009322, uc008jvd.1_5end |
EntrezGene: | Tbr1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 1.54e-13 | 6 |
hippocampal neuron | 1.68e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.84e-33 | 21 |
cerebral hemisphere | 2.84e-33 | 21 |
pallium | 2.84e-33 | 21 |
brain grey matter | 2.93e-30 | 29 |
regional part of telencephalon | 2.93e-30 | 29 |
telencephalon | 2.93e-30 | 29 |
regional part of cerebral cortex | 3.70e-25 | 17 |
gray matter | 6.86e-25 | 34 |
regional part of forebrain | 4.60e-23 | 39 |
forebrain | 4.60e-23 | 39 |
future forebrain | 4.60e-23 | 39 |
anterior neural tube | 2.51e-22 | 40 |
brain | 6.78e-20 | 47 |
future brain | 6.78e-20 | 47 |
occipital lobe | 1.31e-19 | 10 |
visual cortex | 1.31e-19 | 10 |
neocortex | 1.31e-19 | 10 |
regional part of brain | 1.41e-18 | 46 |
pre-chordal neural plate | 4.72e-17 | 49 |
neural tube | 1.05e-15 | 52 |
neural rod | 1.05e-15 | 52 |
future spinal cord | 1.05e-15 | 52 |
neural keel | 1.05e-15 | 52 |
regional part of nervous system | 6.85e-15 | 54 |
neurectoderm | 1.34e-11 | 64 |
neural plate | 1.34e-11 | 64 |
presumptive neural plate | 1.34e-11 | 64 |
central nervous system | 1.66e-10 | 73 |
nervous system | 4.64e-10 | 75 |
ecto-epithelium | 1.99e-09 | 73 |
Ammon's horn | 1.42e-07 | 7 |
lobe parts of cerebral cortex | 1.42e-07 | 7 |
hippocampal formation | 1.42e-07 | 7 |
limbic system | 1.42e-07 | 7 |
limbic lobe | 1.42e-07 | 7 |