FFCP PHASE1:Mm9::chr2:131178570..131178592,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=51902 | |EntrezGene=51902 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=335 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENSMUST00000148058_5end | |association_with_transcript=5bp_to_ENSMUST00000148058_5end | ||
|cluster_id=chr2:131178570..131178592,- | |||
|description=CAGE_peak_1_at_Rnf24_5end | |description=CAGE_peak_1_at_Rnf24_5end | ||
|id=chr2:131178570..131178592,- | |id=chr2:131178570..131178592,- | ||
|ontology_enrichment_celltype=CL:0000117!5.61e-11!23;CL:0000337!5.61e-11!23;CL:0000540!2.93e-10!33;CL:0000047!2.93e-10!33;CL:0000031!2.93e-10!33;CL:0000404!2.93e-10!33;CL:0000393!3.76e-10!39;CL:0000211!3.76e-10!39;CL:0000221!7.49e-08!44;CL:0000133!7.49e-08!44;CL:0002319!9.69e-08!43;CL:0000055!2.27e-07!50 | |ontology_enrichment_celltype=CL:0000117!5.61e-11!23;CL:0000337!5.61e-11!23;CL:0000540!2.93e-10!33;CL:0000047!2.93e-10!33;CL:0000031!2.93e-10!33;CL:0000404!2.93e-10!33;CL:0000393!3.76e-10!39;CL:0000211!3.76e-10!39;CL:0000221!7.49e-08!44;CL:0000133!7.49e-08!44;CL:0002319!9.69e-08!43;CL:0000055!2.27e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.60e-11,23;CL:0000337,5.60e-11,23;CL:0000540,2.93e-10,33;CL:0000047,2.93e-10,33;CL:0000031,2.93e-10,33;CL:0000404,2.93e-10,33;CL:0000393,3.75e-10,39;CL:0000211,3.75e-10,39;CL:0000221,7.49e-08,44;CL:0000133,7.49e-08,44;CL:0002319,9.69e-08,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.01e-17!73;UBERON:0005743!1.01e-17!73;UBERON:0000033!2.84e-17!63;UBERON:0000073!3.15e-17!75;UBERON:0001016!3.15e-17!75;UBERON:0003056!2.34e-16!49;UBERON:0001049!2.81e-15!52;UBERON:0005068!2.81e-15!52;UBERON:0006241!2.81e-15!52;UBERON:0007135!2.81e-15!52;UBERON:0000955!1.09e-14!50;UBERON:0006238!1.09e-14!50;UBERON:0002346!1.87e-14!71;UBERON:0003075!1.87e-14!71;UBERON:0007284!1.87e-14!71;UBERON:0002616!2.57e-14!49;UBERON:0002020!2.79e-14!34;UBERON:0003080!1.04e-13!40;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0002780!3.15e-13!39;UBERON:0001890!3.15e-13!39;UBERON:0006240!3.15e-13!39;UBERON:0002791!6.18e-13!29;UBERON:0003528!6.18e-13!29;UBERON:0001893!6.18e-13!29;UBERON:0000956!6.36e-10!21;UBERON:0001869!6.36e-10!21;UBERON:0000203!6.36e-10!21;UBERON:0002619!8.33e-08!17;UBERON:0000153!1.35e-07!94 | |ontology_enrichment_uberon=UBERON:0001017!1.01e-17!73;UBERON:0005743!1.01e-17!73;UBERON:0000033!2.84e-17!63;UBERON:0000073!3.15e-17!75;UBERON:0001016!3.15e-17!75;UBERON:0003056!2.34e-16!49;UBERON:0001049!2.81e-15!52;UBERON:0005068!2.81e-15!52;UBERON:0006241!2.81e-15!52;UBERON:0007135!2.81e-15!52;UBERON:0000955!1.09e-14!50;UBERON:0006238!1.09e-14!50;UBERON:0002346!1.87e-14!71;UBERON:0003075!1.87e-14!71;UBERON:0007284!1.87e-14!71;UBERON:0002616!2.57e-14!49;UBERON:0002020!2.79e-14!34;UBERON:0003080!1.04e-13!40;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0002780!3.15e-13!39;UBERON:0001890!3.15e-13!39;UBERON:0006240!3.15e-13!39;UBERON:0002791!6.18e-13!29;UBERON:0003528!6.18e-13!29;UBERON:0001893!6.18e-13!29;UBERON:0000956!6.36e-10!21;UBERON:0001869!6.36e-10!21;UBERON:0000203!6.36e-10!21;UBERON:0002619!8.33e-08!17;UBERON:0000153!1.35e-07!94 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.92e-18,64;UBERON:0003075,1.92e-18,64;UBERON:0007284,1.92e-18,64;UBERON:0001017,1.01e-17,73;UBERON:0001016,3.14e-17,75;UBERON:0004121,1.82e-16,95;UBERON:0000924,1.82e-16,95;UBERON:0006601,1.82e-16,95;UBERON:0003056,2.34e-16,49;UBERON:0010371,7.63e-16,73;UBERON:0000073,7.90e-16,54;UBERON:0001049,2.81e-15,52;UBERON:0005068,2.81e-15,52;UBERON:0006241,2.81e-15,52;UBERON:0007135,2.81e-15,52;UBERON:0002020,2.79e-14,34;UBERON:0000955,8.65e-14,47;UBERON:0006238,8.65e-14,47;UBERON:0003080,1.04e-13,40;UBERON:0002616,2.02e-13,46;UBERON:0002780,3.15e-13,39;UBERON:0001890,3.15e-13,39;UBERON:0006240,3.15e-13,39;UBERON:0003528,6.17e-13,29;UBERON:0002791,6.17e-13,29;UBERON:0001893,6.17e-13,29;UBERON:0000956,6.36e-10,21;UBERON:0001869,6.36e-10,21;UBERON:0000203,6.36e-10,21;UBERON:0010314,2.39e-08,92;UBERON:0002619,8.33e-08,17 | |||
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| ||
|short_description=p1@Rnf24 | |short_description=p1@Rnf24 | ||
}} | }} |
Latest revision as of 18:17, 25 September 2015
Short description: | p1@Rnf24 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf24_5end |
Coexpression cluster: | MCL_coexpression_mm9:335 |
Association with transcript: | 5bp_to_ENSMUST00000148058_5end |
EntrezGene: | Rnf24 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.60e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.60e-11 | 23 |
neuron | 2.93e-10 | 33 |
neuronal stem cell | 2.93e-10 | 33 |
neuroblast | 2.93e-10 | 33 |
electrically signaling cell | 2.93e-10 | 33 |
electrically responsive cell | 3.75e-10 | 39 |
electrically active cell | 3.75e-10 | 39 |
ectodermal cell | 7.49e-08 | 44 |
neurectodermal cell | 7.49e-08 | 44 |
neural cell | 9.69e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.92e-18 | 64 |
neural plate | 1.92e-18 | 64 |
presumptive neural plate | 1.92e-18 | 64 |
central nervous system | 1.01e-17 | 73 |
nervous system | 3.14e-17 | 75 |
ectoderm-derived structure | 1.82e-16 | 95 |
ectoderm | 1.82e-16 | 95 |
presumptive ectoderm | 1.82e-16 | 95 |
pre-chordal neural plate | 2.34e-16 | 49 |
ecto-epithelium | 7.63e-16 | 73 |
regional part of nervous system | 7.90e-16 | 54 |
neural tube | 2.81e-15 | 52 |
neural rod | 2.81e-15 | 52 |
future spinal cord | 2.81e-15 | 52 |
neural keel | 2.81e-15 | 52 |
gray matter | 2.79e-14 | 34 |
brain | 8.65e-14 | 47 |
future brain | 8.65e-14 | 47 |
anterior neural tube | 1.04e-13 | 40 |
regional part of brain | 2.02e-13 | 46 |
regional part of forebrain | 3.15e-13 | 39 |
forebrain | 3.15e-13 | 39 |
future forebrain | 3.15e-13 | 39 |
brain grey matter | 6.17e-13 | 29 |
regional part of telencephalon | 6.17e-13 | 29 |
telencephalon | 6.17e-13 | 29 |
cerebral cortex | 6.36e-10 | 21 |
cerebral hemisphere | 6.36e-10 | 21 |
pallium | 6.36e-10 | 21 |
structure with developmental contribution from neural crest | 2.39e-08 | 92 |
regional part of cerebral cortex | 8.33e-08 | 17 |