Swissregulon:NKX6-1,2.p1: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{SwissregulonMotif
|datasource=http://www.swissregulon.unibas.ch/
|name=NKX6-1,2.p1
|associated_transcription_factors=1.000:4825:NKX6-1:NK6 homeobox 1::NM_006168:Nkx6.1;0....") |
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(3 intermediate revisions by the same user not shown) | |||
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{{SwissregulonMotif | {{SwissregulonMotif | ||
|associated_transcription_factors=1.000:4825:NKX6-1:NK6 homeobox 1::NM_006168:Nkx6.1;0.965:84504:NKX6-2:NK6 homeobox 2::NM_177400:NKX6B,GTX,NKX6.1 | |||
|datasource=http://www.swissregulon.unibas.ch/ | |datasource=http://www.swissregulon.unibas.ch/ | ||
|gostat_on_mara_hg19=GO:0007275!multicellular organismal development!1.23341118412392e-15!6252;9079;89796;200734;1756;258;53335;152330;5897;57142;266727;1021;5156;4808;4336;8320;27255;1826;10194;63923;4693;64377;860;6091;1750;9734;1641;7852;2258$GO:0048856!anatomical structure development!1.24572861400611e-14!6252;89796;1756;258;53335;152330;5897;57142;266727;1021;5156;4808;8320;4336;27255;1826;63923;4693;64377;860;6091;1750;9734;1641;7852;2258$GO:0032502!developmental process!3.88864978211717e-11!6252;9079;89796;200734;1756;258;53335;10891;152330;5897;57142;266727;1021;5156;4808;4719;4336;8320;27255;1826;10194;63923;4693;64377;860;6091;1750;9844;9734;1641;7852;2258$GO:0007399!nervous system development!5.59317091209182e-10!6252;89796;152330;57142;266727;1021;4808;4336;27255;1826;63923;64377;4693;1750;6091;1641;7852;2258$GO:0048731!system development!5.60735012432696e-10!6252;89796;1756;258;53335;152330;5897;57142;266727;1021;5156;4808;4336;27255;1826;63923;4693;64377;860;6091;1750;9734;1641;7852;2258$GO:0032501!multicellular organismal process!9.92045579159862e-10!8736;6252;9079;200734;258;10891;57142;266727;1826;63923;64377;860;6091;1750;9734;2258;89796;1756;53335;152330;5897;1021;4808;5156;8320;4336;27255;10194;4693;4857;1641;7852;27115$GO:0005515!protein binding!2.60945092288953e-06!6935;10605;9079;8661;9699;200734;22836;55758;8936;10891;57142;26040;64410;22903;1826;9378;63923;860;6091;3608;9734;9844;288;57180;25942;4734;2258;5523;22998;395;405;9735;4958;51729;1756;9693;152330;1021;5156;4719;1740;27255;4133;4693;56104;1641;7852;3112;2191;22882$GO:0048869!cellular developmental process!3.40347803278745e-06!6252;89796;10891;152330;5897;57142;1021;266727;4808;4719;8320;63923;860;9734;9844;6091;1641;7852$GO:0030154!cell differentiation!3.40347803278745e-06!6252;89796;10891;152330;5897;57142;1021;266727;4808;4719;8320;63923;860;9734;9844;6091;1641;7852$GO:0022008!neurogenesis!9.3351957711907e-05!6252;63923;6091;7852;152330;1021;266727;57142$GO:0030182!neuron differentiation!0.000234017459955919!6091;6252;7852;63923;152330;57142;266727$GO:0007417!central nervous system development!0.00044947103549814!1641;27255;7852;152330;64377;266727;4808$GO:0048699!generation of neurons!0.000502576764926207!6091;6252;7852;63923;152330;57142;266727$GO:0044464!cell part!0.00082370290045417!256051;10605;2026;84107;90321;200734;55758;246213;266727;64410;1826;85025;54805;64377;83700;2232;6091;3608;9734;288;148281;6610;26011;4734;2258;5523;84239;1756;53335;152330;5897;5156;4719;27233;51362;10194;4857;56104;54716;1641;114932;3112;2191;22882;85293;2823;6935;51046;8736;6252;8661;9079;84253;54329;8936;10891;57142;26040;255798;9378;63923;57084;860;1750;9844;25942;29978;405;395;9735;89796;51729;257044;9693;1021;4808;1740;8320;4336;57157;27255;4133;7852$GO:0007409!axonogenesis!0.00132029079511863!6091;7852;63923;152330;57142$GO:0048513!organ development!0.00140896855597155!4693;860;1750;9734;1756;258;53335;7852;152330;5897;266727;1021;5156$GO:0048667!neuron morphogenesis during differentiation!0.00140896855597155!6091;7852;63923;152330;57142$GO:0048812!neurite morphogenesis!0.00140896855597155!6091;7852;63923;152330;57142$GO:0000904!cellular morphogenesis during differentiation!0.00168737178449963!6091;7852;63923;152330;57142$GO:0031175!neurite development!0.00222957365940032!6091;7852;63923;152330;57142$GO:0043229!intracellular organelle!0.00259751599465517!6935;51046;8736;256051;6252;9079;8661;84107;90321;200734;55758;8936;10891;57142;26040;64377;860;2232;3608;1750;9844;9734;288;148281;25942;2258;29978;395;405;9735;89796;51729;1756;53335;5897;1021;4719;4808;8320;4336;57157;51362;10194;4133;4857;1641;3112;114932;22882;85293$GO:0043226!organelle!0.00259751599465517!6935;51046;8736;256051;6252;9079;8661;84107;90321;200734;55758;8936;10891;57142;26040;64377;860;2232;3608;1750;9844;9734;288;148281;25942;2258;29978;395;405;9735;89796;51729;1756;53335;5897;1021;4719;4808;8320;4336;57157;51362;10194;4133;4857;1641;3112;114932;22882;85293$GO:0016071!mRNA metabolic process!0.00259751599465517!10930;51729;10605;51362;10891;22882;1996$GO:0044424!intracellular part!0.00273440154661362!6935;51046;8736;256051;6252;10605;2026;9079;8661;84107;90321;200734;55758;8936;10891;57142;26040;64410;64377;860;2232;3608;1750;9844;9734;288;148281;25942;4734;2258;5523;29978;395;405;9735;89796;51729;1756;53335;5897;1021;4719;4808;27233;57157;8320;4336;51362;10194;4133;4857;1641;7852;3112;114932;22882;85293$GO:0048666!neuron development!0.00333091757159269!6091;7852;63923;152330;57142$GO:0006928!cell motility!0.00447143442296493!9844;8936;7852;63923;152330;57142;266727$GO:0051674!localization of cell!0.00447143442296493!9844;8936;7852;63923;152330;57142;266727$GO:0016043!cellular component organization and biogenesis!0.00526414289298896!22998;405;395;10605;9735;8661;9699;51729;8936;10891;152330;57142;5156;4133;63923;4693;9734;9844;6091;288;7852$GO:0048858!cell projection morphogenesis!0.00994247971181255!6091;7852;63923;152330;57142$GO:0032990!cell part morphogenesis!0.00994247971181255!6091;7852;63923;152330;57142$GO:0030030!cell projection organization and biogenesis!0.00994247971181255!6091;7852;63923;152330;57142$GO:0016070!RNA metabolic process!0.0113384048484248!6935;405;256051;10605;9735;55885;90321;51729;55758;53335;10891;1996;4808;8320;51362;10194;4857;860;9734;1750;10930;3608;25942;22882$GO:0016477!cell migration!0.0171064708215787!7852;63923;152330;57142;266727$GO:0005622!intracellular!0.0217156411430021!6935;51046;8736;256051;6252;10605;2026;9079;8661;84107;90321;84253;200734;55758;8936;10891;57142;26040;64410;64377;860;2232;3608;9734;1750;9844;288;148281;25942;4734;2258;5523;29978;395;405;9735;89796;51729;1756;9693;53335;5897;1021;4719;4808;27233;57157;8320;4336;51362;10194;4133;4857;1641;7852;3112;114932;22882;85293$GO:0009653!anatomical structure morphogenesis!0.0245600697838957!8320;63923;4693;1750;6091;258;7852;152330;57142;5156$GO:0000165!MAPKKK cascade!0.0254911684342942!200734;9693;7852;2258$GO:0006397!mRNA processing!0.0303600509017578!10930;51729;51362;10891;1996$GO:0031252!leading edge!0.0303600509017578!7852;2191;1021$GO:0030097!hemopoiesis!0.0305702301511447!9734;53335;5897;1021$GO:0042475!odontogenesis of dentine-containing teeth!0.0327398592304881!258;5156$GO:0051093!negative regulation of developmental process!0.0341553064083502!152330;57142;1021$GO:0005737!cytoplasm!0.0360994107558669!51046;8736;6252;10605;2026;8661;200734;8936;57142;64410;64377;2232;9844;9734;288;148281;4734;2258;29978;395;9735;89796;51729;1756;53335;1021;4719;4336;57157;27233;4133;1641;3112;7852;114932$GO:0048534!hemopoietic or lymphoid organ development!0.0360994107558669!9734;53335;5897;1021$GO:0030148!sphingolipid biosynthetic process!0.0364145956633273!51046;6610$GO:0022610!biological adhesion!0.0385574156585624!1826;27255;9378;63923;4958;56104;6091;152330;1021$GO:0007155!cell adhesion!0.0385574156585624!1826;27255;9378;63923;4958;56104;6091;152330;1021$GO:0002520!immune system development!0.0395619922288944!9734;53335;5897;1021$GO:0031214!biomineral formation!0.0395619922288944!258;860;1021$GO:0001503!ossification!0.0395619922288944!258;860;1021$GO:0005886!plasma membrane!0.0395619922288944!2026;200734;54329;1756;9693;152330;266727;5156;1740;27255;1826;6091;9844;56104;54716;148281;6610;7852;3112;2191;2823$GO:0001649!osteoblast differentiation!0.0395619922288944!860;1021$GO:0042476!odontogenesis!0.0395619922288944!258;5156$GO:0010468!regulation of gene expression!0.0395619922288944!6935;405;256051;10605;9735;8661;55885;90321;55758;53335;10891;1021;4808;8320;10194;860;3608;9734;1750;25942;22882$GO:0050770!regulation of axonogenesis!0.0395619922288944!6091;57142$GO:0005856!cytoskeleton!0.0395619922288944!8736;395;9735;4133;89796;9844;288;1641;1756;8936;85293$GO:0046849!bone remodeling!0.0395619922288944!258;860;1021$GO:0050794!regulation of cellular process!0.0395619922288944!6935;405;256051;10605;9735;8661;55885;90321;84253;200734;55758;9693;53335;10891;152330;57142;1021;4808;8320;10194;4133;860;1750;9734;3608;25942;7852;22882$GO:0001667!ameboidal cell migration!0.0395619922288944!7852$GO:0048407!platelet-derived growth factor binding!0.0395619922288944!5156$GO:0043696!dedifferentiation!0.0395619922288944!1021$GO:0043697!cell dedifferentiation!0.0395619922288944!1021$GO:0004324!ferredoxin-NADP+ reductase activity!0.0395619922288944!2232$GO:0021527!spinal cord association neuron differentiation!0.0395619922288944!266727$GO:0005018!platelet-derived growth factor alpha-receptor activity!0.0395619922288944!5156$GO:0008937!ferredoxin reductase activity!0.0395619922288944!2232$GO:0016731!oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor!0.0395619922288944!2232$GO:0016730!oxidoreductase activity, acting on iron-sulfur proteins as donors!0.0395619922288944!2232$GO:0035066!positive regulation of histone acetylation!0.0395619922288944!10891$GO:0021516!dorsal spinal cord development!0.0395619922288944!266727$GO:0032027!myosin light chain binding!0.0395619922288944!7852$GO:0048468!cell development!0.0421206776987997!6252;63923;9844;6091;7852;152330;1021;266727;57142;4719$GO:0030183!B cell differentiation!0.0421206776987997!9734;5897$GO:0001501!skeletal development!0.0421206776987997!1750;258;860;1021$GO:0048771!tissue remodeling!0.0457510921714192!258;860;1021$GO:0005634!nucleus!0.0457510921714192!6935;29978;405;256051;9735;9079;8661;84107;90321;51729;55758;53335;10891;5897;57142;1021;4808;26040;8320;51362;10194;4857;860;9734;1750;3608;25942;22882;2258$GO:0030041!actin filament polymerization!0.04581416696133!395;8936 | |||
|gostat_on_mara_mm9= | |||
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|motif_activities_mm9=0.773628378291,-0.266394380868,0.293783241262,0.731374242467,0.235917642425,-0.396252459919,0.138158796151,-0.333257871955,0.701626115459,0.0604406485991,0.191610732498,-0.332403414718,-0.200859588156,-0.671274902663,-0.66578790749,0.036163903258,0.571965802027,-1.01292854481,-1.00326942444,-0.482387211179,-0.0903890151831,-0.386027664551,-0.448883170525,0.1156371726,0.560834236765,0.556025798378,0.312921994286,-0.0361747825078,1.24974202792,1.41746138069,0.581223381249,-1.03986948011,-0.522399700609,-0.874056951311,0.31833855197,0.315300191616,0.192519711306,-0.563190204478,-0.0252197357505,-0.802677344401,0.200703890916,0.250348716139,-0.595368995799,0.618889304757,0.951500253402,1.31198662532,-1.31225433522,-0.786202761704,-1.65096311527,-1.29132823283,-0.872139095321,-1.22614306355,-0.472810099926,0.309885744361,-0.20169290427,-0.822818304223,-0.528093867168,-0.48728041245,1.28906516613,1.68033854802,1.13296135563,-1.10391780187,-1.50250421714,-1.60007493236,-1.72796431045,-1.69953252382,-1.57473178109,-1.56789526174,2.66029276989,2.62032059808,2.17894076877,0.280644498145,0.480988224764,1.99828960821,2.19559138352,2.13006470152,-0.67647395835,0.32953338625,0.235218588654,1.04596309241,1.94312547146,1.94337781756,-0.0296384521865,-0.107288285653,0.521075459159,1.90065864588,1.61528661377,1.5906734905,-0.0510017227892,-0.590884055037,-0.272868833669,-3.0239321902,-1.96671734839,-1.91149536711,-2.02978425628,-2.2130414408,-2.07480541708,0.256547214606,0.724201308146,-0.0366158466559,0.388094145888,1.29338131861,-0.0289797009207,0.735018670874,1.25792629155,1.71251470436,1.73270471616,-0.82336810693,-1.59562328602,-1.76779057127,-0.365749471863,-0.0561051799217,-0.239948538531,0.131425378487,0.190466912109,-1.05794900672,-1.76138586236,-1.65105833358,-1.35414880188,-0.653579117474,-0.649104160489,-0.403503014483,-0.364400590685,0.44303877296,-0.0541212760835,0.384000654078,0.930773502097,0.154751846158,0.688559428679,0.449834852359,0.721281618666,2.60358503031,0.44193011882,1.26996517998,0.323007005944,0.686631013714,0.374755962127,-0.615587939252,-0.295337477671,-0.73499504727,2.01221858847,0.384996856908,0.594447424605,1.93802108329,1.34288457079,1.96310372224,1.46177377171,0.966619798978,0.066585569186,0.453363500582,0.0231538156572,-0.114670342578,1.26143205142,-0.170136426655,0.562692297279,0.301099082396,-0.0256933240426,0.00779078641894,0.376288077126,-0.257621556485,0.582489930733,0.291889723826,-0.128231974417,0.0863866077239,0.521550557472,0.119927182795,-0.342212519299,-0.310611003794,-0.142610994965,0.140480499347,-0.791636822671,-0.695216319603,-0.269503566685,-1.12088890546,-0.0859610958633,2.37939753387,-0.0888991461644,-0.0143890224425,0.564278912177,0.3371267154,-1.09507768421,-1.11918545336,-0.769190894485,-0.927148012375,0.614239670526,-0.103664478184,0.0609091673824,-0.359369497552,-0.311065835776,1.01298780643,2.01886250057,1.21151476019,-1.09155764059,0.297071198607,-0.405977823455,1.06369511576,0.296538764806,-0.0203903850447,-0.202238613404,-0.0769645325847,0.0789774883116,-0.716761730634,-2.42497798185,-1.2637791195,-1.04410882786,-1.37218753532,-1.96511851191,-1.96161422404,-1.26670046116,-1.94707309075,-0.501175619371,-0.827196505025,1.64895039782,-1.61364712143,-1.78805264503,-2.79707821571,-2.42138424758,-2.36819540696,-0.74014348901,-0.36462629915,0.081321294888,1.01724174466,1.59621207189,0.351839815987,0.651169793119,0.865280262469,0.998087653776,1.71966250685,0.730744651294,1.57317929802,1.20699200852,1.01128583167,-0.195528522417,-0.151805796416,-0.300590498729,-0.760492745845,-0.147742164394,0.355853082703,0.365616718436,-1.02242216813,-0.750816062761,-0.822654504825,-0.755524752704,-0.698200736277,-0.612455210182,-0.86966344405,-0.322885498349,-0.279789877916,-1.0716738583,0.877019478228,-1.15818694465,-0.60803981072,0.17816151147,-0.72325298836,-0.815790834995,-0.757112716282,-0.303242283334,-0.148515523162,-2.31747427855,-1.753225012,-1.15035353401,-1.09571385878,-0.293406664551,-0.969174102431,-1.39451518431,-1.14394827439,-0.0423089195493,1.23960777405,-0.561191429616,0.175151948618,-0.966509939222,0.20291898585,0.17995890832,-0.953885650055,-1.04447071316,-0.848723960468,-0.361170851756,-0.268968674539,0.0178463737593,-0.0756572125683,1.07411277907,0.265360397651,1.04560848469,-0.224965350491,-1.02071146393,-0.241082210652,0.375469260073,0.522903274394,0.137740502013,-0.281136176093,0.591510364926,0.314019335428,0.464442679325,1.16738300738,-0.542005238228,-0.861679787759,0.364461337043,0.954083762958,0.390411823906,0.262635825313,-0.514519902523,0.688679863166,1.23912893128,-0.951312594015,-1.20081176347,0.925033152647,0.601615874985,0.616332136108,0.800730227027,1.42141542128,1.40433202188,0.256286858027,0.211034021801,-0.214741853534,-0.632774666894,-1.82826576704,0.234582959818,0.579990369962,0.449683000086,-0.743868972072,-0.88473688344,-0.163783614653,-0.0410026308509,-0.18251165829,-0.418226772547,-0.0401842221586,-0.298971418451,-0.2465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| |||
|name=NKX6-1,2.p1 | |name=NKX6-1,2.p1 | ||
|weight_matrix=NA:NKX6-1,2.p1;PO:A:C:G:T;01:82.159766:95.963758:38.857856:281.759189;02:126.064185:48.906653:14.217472:309.552259;03:33.061037:67.448378:9.624169:388.606985;04:8.305109:32.690182:31.251835:426.493443;05:19.808092:21.150033:15.91984:441.862604;06:406.640976:20.398328:34.687266:37.013999;07:449.714791:5.026382:11.151616:32.84778;08:33.406258:18.882233:10.281391:436.170687;09:49.942538:17.036788:78.284286:353.476957;10:69.94769:13.155895:291.485985:124.150999;11:116.206507:66.22343:198.976184:117.334448;12:135.097831:77.258441:22.300915:264.083382;13:85.081708:45.3751:42.345424:325.938337 | |weight_matrix=NA:NKX6-1,2.p1;PO:A:C:G:T;01:82.159766:95.963758:38.857856:281.759189;02:126.064185:48.906653:14.217472:309.552259;03:33.061037:67.448378:9.624169:388.606985;04:8.305109:32.690182:31.251835:426.493443;05:19.808092:21.150033:15.91984:441.862604;06:406.640976:20.398328:34.687266:37.013999;07:449.714791:5.026382:11.151616:32.84778;08:33.406258:18.882233:10.281391:436.170687;09:49.942538:17.036788:78.284286:353.476957;10:69.94769:13.155895:291.485985:124.150999;11:116.206507:66.22343:198.976184:117.334448;12:135.097831:77.258441:22.300915:264.083382;13:85.081708:45.3751:42.345424:325.938337 | ||
}} | }} |
Latest revision as of 09:56, 17 April 2012
recognized by
- NKX6-1 ( EntrezGene:4825 )
- NKX6-2 ( EntrezGene:84504 )
(data source: http://www.swissregulon.unibas.ch/)
Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Motif Activities (MARA) on Phase1 data
hg19
Chart |
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Sample of clicked point: |
mm9
Z-value table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Chart |
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Sample of clicked point: |
GOStat results on predicted Motif target
hg19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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