FFCP PHASE1:Mm9::chr7:25689435..25689478,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16801 | |EntrezGene=16801 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=822 | |||
|TSSclassifier=NA | |||
|UniProt=Q61210 | |UniProt=Q61210 | ||
|association_with_transcript=9bp_to_ENSMUST00000117419_5end | |association_with_transcript=9bp_to_ENSMUST00000117419_5end | ||
|cluster_id=chr7:25689435..25689478,+ | |||
|description=CAGE_peak_2_at_Arhgef1_5end | |description=CAGE_peak_2_at_Arhgef1_5end | ||
|id=chr7:25689435..25689478,+ | |id=chr7:25689435..25689478,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!3.31e-17!94;UBERON:0007811!4.50e-15!86;UBERON:0000033!1.79e-10!63;UBERON:0001049!2.41e-10!52;UBERON:0005068!2.41e-10!52;UBERON:0006241!2.41e-10!52;UBERON:0007135!2.41e-10!52;UBERON:0000955!1.16e-09!50;UBERON:0006238!1.16e-09!50;UBERON:0003056!2.83e-09!49;UBERON:0002616!4.04e-09!49;UBERON:0002346!2.22e-08!71;UBERON:0003075!2.22e-08!71;UBERON:0007284!2.22e-08!71;UBERON:0003080!7.41e-08!40;UBERON:0002780!2.43e-07!39;UBERON:0001890!2.43e-07!39;UBERON:0006240!2.43e-07!39;UBERON:0002020!3.53e-07!34;UBERON:0000475!9.15e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.58e-10,54;UBERON:0001049,2.41e-10,52;UBERON:0005068,2.41e-10,52;UBERON:0006241,2.41e-10,52;UBERON:0007135,2.41e-10,52;UBERON:0010371,2.42e-10,73;UBERON:0002346,2.85e-10,64;UBERON:0003075,2.85e-10,64;UBERON:0007284,2.85e-10,64;UBERON:0003056,2.83e-09,49;UBERON:0000955,5.49e-09,47;UBERON:0006238,5.49e-09,47;UBERON:0002616,1.87e-08,46;UBERON:0003080,7.41e-08,40;UBERON:0002780,2.43e-07,39;UBERON:0001890,2.43e-07,39;UBERON:0006240,2.43e-07,39;UBERON:0002020,3.53e-07,34;UBERON:0000153,9.37e-07,43 | |||
|phase1_expression=4.96461426024861,2.09385244583617,2.27499619694768,3.93203474698879,4.50806156951712,3.86122325397347,2.10251376535973,32.7973241541604,4.78681655315667,7.49006484230379,4.62288514208863,4.46724090373884,26.0225109495433,33.831695736152,4.99664642723494,8.90891176515234,2.79824751251259,12.7762176970086,12.4774134581222,11.4585205985468,7.05859308253879,11.9149141441062,10.1867917764185,5.43974237497583,3.89995777814189,1.72269589234506,3.01533397311352,2.37018355954478,2.47030445293286,4.03248207615889,1.77384408524244,6.35030673459631,10.4561013889377,0,5.77703239502549,3.32469290716985,3.87921776898501,2.92972141515835,2.3440060335714,1.0470474879476,4.1176204162171,2.04913645487534,2.42755176515577,2.89562681343828,1.72340783073175,4.77221555620372,2.34717403304412,1.52617609466313,1.97717564461025,2.72201858703997,1.81982348112971,1.43752564364972,14.0937389088499,30.4652099644765,19.4934403502629,1.54355661621568,2.57880095944881,3.09403255366465,5.26022798234954,11.6378015439847,7.60597684207415,3.04960078862219,3.55717918444456,1.3498495759221,0.988866362566974,1.4209602298922,3.29560121570245,3.07374644257244,4.56234294157302,5.67024940993101,3.99617426567626,10.5690864229407,7.73039893330647,4.65465037016825,5.75072826109418,3.67687514644008,7.70811166995721,7.66124028511126,7.37311359629969,8.70449499019279,8.05091263701205,8.33461392890816,9.77140496504833,11.2552522006336,8.70950012327818,6.77645746589436,8.39992916714707,9.69277118291563,2.04460721999597,1.43585964202892,6.37701875143691,2.58127163094416,2.03991400112325,4.85732872474035,3.89865850468601,1.79210754838934,2.66844398250329,2.55645483867087,1.55871602761721,2.12003744706204,9.85903938436764,1.28326477414318,5.09610479413291,0,1.94841936910093,2.78695852022608,1.51657333504435,3.88225191044804,18.3845897389492,4.00793775475027,3.29622120855658,3.95805121805784,4.15107895060905,4.82312449768392,5.99702406392095,3.01599819191221,3.46072954828123,2.74738778147832,7.96149496754887,10.3530783966342,6.18356251689102,4.363877278217,3.72783522436244,23.1296829639122,20.1068838540917,3.83185582812887,4.43315960671905,3.59941638596045,4.3203877204842,20.8208988772704,11.8950156732843,15.0785222535437,16.6871347384585,15.0872119824895,12.0517065844545,18.9822277789276,4.78645010096487,5.84712761867437,4.0435641349388,8.41767423545896,5.85541993332167,3.67843367093557,4.68161537493908,8.89158425230719,11.7022778540284,10.3772113430728,9.65127762965207,11.3829483125167,6.25147179505242,5.8622884852024,5.98233822157426,7.23345917010997,11.6779844674751,6.61679116392116,9.05441400194951,5.57295947091781,4.21327912387941,3.08817488537658,3.9782889915383,3.93538967817454,3.98694301967864,3.06105504483725,7.10234206755631,4.9191057936851,3.70241070929708,3.48800917125612,3.21928081679543,3.73649095574942,3.78487654801005,2.62667942526552,2.99954595319666,2.63159977365598,5.92785311285837,3.35516046900929,10.5144974282064,12.4514580978934,5.94753809370836,2.64450566663544,4.26576501070468,4.87697010906921,3.35055399437443,5.04208811558356,3.55804870151792,3.42406127002606,4.74529061544512,2.63518327558417,4.52403375840485,4.37704238490532,3.50935356814416,4.49409704327111,5.18731319699266,3.18626037206988,4.36236172192088,3.99869794134051,6.76246414038483,5.29493452397817,3.87904974335251,5.82127305089644,4.61626721007078,3.83786384746966,4.08196692387575,2.46794327843601,3.26097889795864,6.50695912292767,4.32429789249047,5.17182858485164,4.46292267054706,5.788251834058,2.5462585178142,3.74004978686054,6.64754429777645,3.56929837144506,2.87536413054709,4.46569137202204,4.36852742360385,4.04126204715379,3.22915344339442,3.37710464954357,4.98833613449833,4.54779388249163,5.21487924614483,6.11082308790677,6.57132695207806,8.04030035720716,4.28478553594825,7.80534591431195,7.09358148477859,4.4292937929755,4.14582398509466,4.91589944147214,5.00786447411097,4.48412081602686,0,0.54390568381871,7.37646409528554,9.93372286697037,16.8578119487182,20.0431984072667,2.62295912602681,2.01976741763498,1.89304931649754,3.12350995437311,4.30846795465598,1.91175038362042,2.89638276307112,3.67999490025482,1.61924280669958,3.21481443702443,3.55759000151871,25.3843839973228,5.25178315270594,5.1639025063504,5.86393053672874,4.78413356620353,5.30980553359851,6.31229654002952,4.53485335447127,5.09233715340925,5.02013217897314,6.45613810682248,3.87642439752332,2.90826983582004,3.20847640546249,5.68866164284469,4.21674434299995,5.15677716240934,12.5962654128902,4.50152735078276,6.20921682157222,4.50107773566344,7.62563004661776,4.99432689285798,7.40470592709544,8.82948352432338,5.86679270159276,17.1583977399694,6.83638033970382,4.9465875882444,5.16686165426898,4.40284351975538,4.41677672811605,5.0883678920969,5.53813589596716,15.0194494628513,6.4930934703184,6.19160603889667,4.07427960213366,5.65105371014073,7.38148829693536,8.23601423543482,9.00885678967433,10.216456019627,10.2267980615274,7.63736494412091,3.32152793260192,2.64315307264903,4.86024033698106,3.3454127362315,4.80397640241591,3.37160865962052,5.62043498932284,3.14107130380836,4.27729411862916,3.72803587852155,5.6369293868419,4.78452947340732,3.14371131868485,6.41688921535357,4.00395452780966,6.9272011451219,4.69428954583016,6.38001485735356,7.96931017635402,9.42178071221424,4.32045009386798,9.79634473947353,6.68993210457542,7.9087437016917,9.09445760844565,11.0996551313838,6.95384741734427,13.2214994471966,12.2582307554899,10.2985778947111,11.88826183818,12.0991422164209,11.5000299272908,12.6999630965235,13.4408437508804,3.62768613784338,4.21773311410723,2.51198798506532,2.85403847818933,5.40930863290133,5.06742683718191,4.02933573387983,5.14484109789758,7.52358156053045,11.2950368523413,13.3494318587081,9.73922372846974,11.6860163993708,13.7016503954128,9.82012066606611,11.4753825039407,11.2580300806055,6.34399372577886,9.31968561153276,3.1136204275253,5.58634822761443,6.4878770186571,8.75184181445858,5.03071590307158,6.61836630420051,5.11167473943715,4.12070114477788,6.73930340142812,6.82282471762253,5.83002389747551,6.97917463128482,5.71213195566283,5.89031402124797,6.03072424033939,5.23923060411381,4.86714168968393,5.01563973205633,7.82963211526283,4.85756436443511,5.48590803816665,4.96932257246145,5.00715998889374,4.79643174886684,6.30532848782715,5.92302255241735,5.12198324043763,6.05060336307039,6.79020569229309,5.05028044491965,5.81311588808453,4.53120618927592,4.09231043169689,5.26785260032284,6.94463799532109,13.4897712086491,5.84829021113521,9.88406848622172,11.6685882561994,6.61774257358547,7.41977073985349 | |phase1_expression=4.96461426024861,2.09385244583617,2.27499619694768,3.93203474698879,4.50806156951712,3.86122325397347,2.10251376535973,32.7973241541604,4.78681655315667,7.49006484230379,4.62288514208863,4.46724090373884,26.0225109495433,33.831695736152,4.99664642723494,8.90891176515234,2.79824751251259,12.7762176970086,12.4774134581222,11.4585205985468,7.05859308253879,11.9149141441062,10.1867917764185,5.43974237497583,3.89995777814189,1.72269589234506,3.01533397311352,2.37018355954478,2.47030445293286,4.03248207615889,1.77384408524244,6.35030673459631,10.4561013889377,0,5.77703239502549,3.32469290716985,3.87921776898501,2.92972141515835,2.3440060335714,1.0470474879476,4.1176204162171,2.04913645487534,2.42755176515577,2.89562681343828,1.72340783073175,4.77221555620372,2.34717403304412,1.52617609466313,1.97717564461025,2.72201858703997,1.81982348112971,1.43752564364972,14.0937389088499,30.4652099644765,19.4934403502629,1.54355661621568,2.57880095944881,3.09403255366465,5.26022798234954,11.6378015439847,7.60597684207415,3.04960078862219,3.55717918444456,1.3498495759221,0.988866362566974,1.4209602298922,3.29560121570245,3.07374644257244,4.56234294157302,5.67024940993101,3.99617426567626,10.5690864229407,7.73039893330647,4.65465037016825,5.75072826109418,3.67687514644008,7.70811166995721,7.66124028511126,7.37311359629969,8.70449499019279,8.05091263701205,8.33461392890816,9.77140496504833,11.2552522006336,8.70950012327818,6.77645746589436,8.39992916714707,9.69277118291563,2.04460721999597,1.43585964202892,6.37701875143691,2.58127163094416,2.03991400112325,4.85732872474035,3.89865850468601,1.79210754838934,2.66844398250329,2.55645483867087,1.55871602761721,2.12003744706204,9.85903938436764,1.28326477414318,5.09610479413291,0,1.94841936910093,2.78695852022608,1.51657333504435,3.88225191044804,18.3845897389492,4.00793775475027,3.29622120855658,3.95805121805784,4.15107895060905,4.82312449768392,5.99702406392095,3.01599819191221,3.46072954828123,2.74738778147832,7.96149496754887,10.3530783966342,6.18356251689102,4.363877278217,3.72783522436244,23.1296829639122,20.1068838540917,3.83185582812887,4.43315960671905,3.59941638596045,4.3203877204842,20.8208988772704,11.8950156732843,15.0785222535437,16.6871347384585,15.0872119824895,12.0517065844545,18.9822277789276,4.78645010096487,5.84712761867437,4.0435641349388,8.41767423545896,5.85541993332167,3.67843367093557,4.68161537493908,8.89158425230719,11.7022778540284,10.3772113430728,9.65127762965207,11.3829483125167,6.25147179505242,5.8622884852024,5.98233822157426,7.23345917010997,11.6779844674751,6.61679116392116,9.05441400194951,5.57295947091781,4.21327912387941,3.08817488537658,3.9782889915383,3.93538967817454,3.98694301967864,3.06105504483725,7.10234206755631,4.9191057936851,3.70241070929708,3.48800917125612,3.21928081679543,3.73649095574942,3.78487654801005,2.62667942526552,2.99954595319666,2.63159977365598,5.92785311285837,3.35516046900929,10.5144974282064,12.4514580978934,5.94753809370836,2.64450566663544,4.26576501070468,4.87697010906921,3.35055399437443,5.04208811558356,3.55804870151792,3.42406127002606,4.74529061544512,2.63518327558417,4.52403375840485,4.37704238490532,3.50935356814416,4.49409704327111,5.18731319699266,3.18626037206988,4.36236172192088,3.99869794134051,6.76246414038483,5.29493452397817,3.87904974335251,5.82127305089644,4.61626721007078,3.83786384746966,4.08196692387575,2.46794327843601,3.26097889795864,6.50695912292767,4.32429789249047,5.17182858485164,4.46292267054706,5.788251834058,2.5462585178142,3.74004978686054,6.64754429777645,3.56929837144506,2.87536413054709,4.46569137202204,4.36852742360385,4.04126204715379,3.22915344339442,3.37710464954357,4.98833613449833,4.54779388249163,5.21487924614483,6.11082308790677,6.57132695207806,8.04030035720716,4.28478553594825,7.80534591431195,7.09358148477859,4.4292937929755,4.14582398509466,4.91589944147214,5.00786447411097,4.48412081602686,0,0.54390568381871,7.37646409528554,9.93372286697037,16.8578119487182,20.0431984072667,2.62295912602681,2.01976741763498,1.89304931649754,3.12350995437311,4.30846795465598,1.91175038362042,2.89638276307112,3.67999490025482,1.61924280669958,3.21481443702443,3.55759000151871,25.3843839973228,5.25178315270594,5.1639025063504,5.86393053672874,4.78413356620353,5.30980553359851,6.31229654002952,4.53485335447127,5.09233715340925,5.02013217897314,6.45613810682248,3.87642439752332,2.90826983582004,3.20847640546249,5.68866164284469,4.21674434299995,5.15677716240934,12.5962654128902,4.50152735078276,6.20921682157222,4.50107773566344,7.62563004661776,4.99432689285798,7.40470592709544,8.82948352432338,5.86679270159276,17.1583977399694,6.83638033970382,4.9465875882444,5.16686165426898,4.40284351975538,4.41677672811605,5.0883678920969,5.53813589596716,15.0194494628513,6.4930934703184,6.19160603889667,4.07427960213366,5.65105371014073,7.38148829693536,8.23601423543482,9.00885678967433,10.216456019627,10.2267980615274,7.63736494412091,3.32152793260192,2.64315307264903,4.86024033698106,3.3454127362315,4.80397640241591,3.37160865962052,5.62043498932284,3.14107130380836,4.27729411862916,3.72803587852155,5.6369293868419,4.78452947340732,3.14371131868485,6.41688921535357,4.00395452780966,6.9272011451219,4.69428954583016,6.38001485735356,7.96931017635402,9.42178071221424,4.32045009386798,9.79634473947353,6.68993210457542,7.9087437016917,9.09445760844565,11.0996551313838,6.95384741734427,13.2214994471966,12.2582307554899,10.2985778947111,11.88826183818,12.0991422164209,11.5000299272908,12.6999630965235,13.4408437508804,3.62768613784338,4.21773311410723,2.51198798506532,2.85403847818933,5.40930863290133,5.06742683718191,4.02933573387983,5.14484109789758,7.52358156053045,11.2950368523413,13.3494318587081,9.73922372846974,11.6860163993708,13.7016503954128,9.82012066606611,11.4753825039407,11.2580300806055,6.34399372577886,9.31968561153276,3.1136204275253,5.58634822761443,6.4878770186571,8.75184181445858,5.03071590307158,6.61836630420051,5.11167473943715,4.12070114477788,6.73930340142812,6.82282471762253,5.83002389747551,6.97917463128482,5.71213195566283,5.89031402124797,6.03072424033939,5.23923060411381,4.86714168968393,5.01563973205633,7.82963211526283,4.85756436443511,5.48590803816665,4.96932257246145,5.00715998889374,4.79643174886684,6.30532848782715,5.92302255241735,5.12198324043763,6.05060336307039,6.79020569229309,5.05028044491965,5.81311588808453,4.53120618927592,4.09231043169689,5.26785260032284,6.94463799532109,13.4897712086491,5.84829021113521,9.88406848622172,11.6685882561994,6.61774257358547,7.41977073985349 | ||
|short_description=p2@Arhgef1 | |short_description=p2@Arhgef1 | ||
}} | }} |
Latest revision as of 09:58, 26 September 2015
Short description: | p2@Arhgef1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Arhgef1_5end |
Coexpression cluster: | MCL_coexpression_mm9:822 |
Association with transcript: | 9bp_to_ENSMUST00000117419_5end |
EntrezGene: | Arhgef1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.58e-10 | 54 |
neural tube | 2.41e-10 | 52 |
neural rod | 2.41e-10 | 52 |
future spinal cord | 2.41e-10 | 52 |
neural keel | 2.41e-10 | 52 |
ecto-epithelium | 2.42e-10 | 73 |
neurectoderm | 2.85e-10 | 64 |
neural plate | 2.85e-10 | 64 |
presumptive neural plate | 2.85e-10 | 64 |
pre-chordal neural plate | 2.83e-09 | 49 |
brain | 5.49e-09 | 47 |
future brain | 5.49e-09 | 47 |
regional part of brain | 1.87e-08 | 46 |
anterior neural tube | 7.41e-08 | 40 |
regional part of forebrain | 2.43e-07 | 39 |
forebrain | 2.43e-07 | 39 |
future forebrain | 2.43e-07 | 39 |
gray matter | 3.53e-07 | 34 |
anterior region of body | 9.37e-07 | 43 |