FFCP PHASE1:Mm9::chr18:37925612..37925662,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | |EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1715 | |||
|TSSclassifier=NA | |||
|UniProt=Q91XY7 | |UniProt=Q91XY7 | ||
|association_with_transcript=378bp_to_ENSMUST00000044851,NM_033595,uc008erd.1_5end | |association_with_transcript=378bp_to_ENSMUST00000044851,NM_033595,uc008erd.1_5end | ||
|cluster_id=chr18:37925612..37925662,+ | |||
|description=CAGE_peak_9_at_Pcdhga11_5end,CAGE_peak_9_at_Pcdhga12_5end,CAGE_peak_9_at_Pcdhga3_5end,CAGE_peak_9_at_Pcdhga8_5end,CAGE_peak_9_at_Pcdhga9_5end,CAGE_peak_9_at_Pcdhgb6_5end,CAGE_peak_9_at_Pcdhgc3_5end,CAGE_peak_9_at_Pcdhgc4_5end,CAGE_peak_9_at_Pcdhgc5_5end | |description=CAGE_peak_9_at_Pcdhga11_5end,CAGE_peak_9_at_Pcdhga12_5end,CAGE_peak_9_at_Pcdhga3_5end,CAGE_peak_9_at_Pcdhga8_5end,CAGE_peak_9_at_Pcdhga9_5end,CAGE_peak_9_at_Pcdhgb6_5end,CAGE_peak_9_at_Pcdhgc3_5end,CAGE_peak_9_at_Pcdhgc4_5end,CAGE_peak_9_at_Pcdhgc5_5end | ||
|id=chr18:37925612..37925662,+ | |id=chr18:37925612..37925662,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.77e-10!23;CL:0000337!2.77e-10!23;CL:0000221!6.09e-08!44;CL:0000133!6.09e-08!44;CL:0002319!8.37e-08!43 | |ontology_enrichment_celltype=CL:0000117!2.77e-10!23;CL:0000337!2.77e-10!23;CL:0000221!6.09e-08!44;CL:0000133!6.09e-08!44;CL:0002319!8.37e-08!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-11,23;CL:0000337,1.08e-11,23;CL:0000221,1.15e-09,44;CL:0000133,1.15e-09,44;CL:0002319,1.71e-09,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.39e-24!63;UBERON:0000955!1.25e-22!50;UBERON:0006238!1.25e-22!50;UBERON:0001049!1.50e-22!52;UBERON:0005068!1.50e-22!52;UBERON:0006241!1.50e-22!52;UBERON:0007135!1.50e-22!52;UBERON:0000073!3.20e-22!75;UBERON:0001016!3.20e-22!75;UBERON:0002616!6.68e-22!49;UBERON:0002346!1.59e-21!71;UBERON:0003075!1.59e-21!71;UBERON:0007284!1.59e-21!71;UBERON:0001017!2.00e-21!73;UBERON:0005743!2.00e-21!73;UBERON:0004121!6.76e-21!102;UBERON:0000924!6.76e-21!102;UBERON:0006601!6.76e-21!102;UBERON:0003056!7.33e-20!49;UBERON:0003080!2.43e-17!40;UBERON:0002780!6.73e-17!39;UBERON:0001890!6.73e-17!39;UBERON:0006240!6.73e-17!39;UBERON:0002020!1.91e-16!34;UBERON:0002791!7.42e-15!29;UBERON:0003528!7.42e-15!29;UBERON:0001893!7.42e-15!29;UBERON:0000153!2.24e-13!94;UBERON:0007811!3.27e-12!86;UBERON:0000956!3.88e-12!21;UBERON:0001869!3.88e-12!21;UBERON:0000203!3.88e-12!21;UBERON:0000025!1.92e-11!114;UBERON:0004111!1.41e-10!122;UBERON:0002619!6.59e-10!17;UBERON:0000468!4.53e-08!333;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10;UBERON:0000475!2.42e-07!200 | |ontology_enrichment_uberon=UBERON:0000033!2.39e-24!63;UBERON:0000955!1.25e-22!50;UBERON:0006238!1.25e-22!50;UBERON:0001049!1.50e-22!52;UBERON:0005068!1.50e-22!52;UBERON:0006241!1.50e-22!52;UBERON:0007135!1.50e-22!52;UBERON:0000073!3.20e-22!75;UBERON:0001016!3.20e-22!75;UBERON:0002616!6.68e-22!49;UBERON:0002346!1.59e-21!71;UBERON:0003075!1.59e-21!71;UBERON:0007284!1.59e-21!71;UBERON:0001017!2.00e-21!73;UBERON:0005743!2.00e-21!73;UBERON:0004121!6.76e-21!102;UBERON:0000924!6.76e-21!102;UBERON:0006601!6.76e-21!102;UBERON:0003056!7.33e-20!49;UBERON:0003080!2.43e-17!40;UBERON:0002780!6.73e-17!39;UBERON:0001890!6.73e-17!39;UBERON:0006240!6.73e-17!39;UBERON:0002020!1.91e-16!34;UBERON:0002791!7.42e-15!29;UBERON:0003528!7.42e-15!29;UBERON:0001893!7.42e-15!29;UBERON:0000153!2.24e-13!94;UBERON:0007811!3.27e-12!86;UBERON:0000956!3.88e-12!21;UBERON:0001869!3.88e-12!21;UBERON:0000203!3.88e-12!21;UBERON:0000025!1.92e-11!114;UBERON:0004111!1.41e-10!122;UBERON:0002619!6.59e-10!17;UBERON:0000468!4.53e-08!333;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10;UBERON:0000475!2.42e-07!200 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.02e-27,54;UBERON:0002346,7.77e-27,64;UBERON:0003075,7.77e-27,64;UBERON:0007284,7.77e-27,64;UBERON:0001016,1.08e-26,75;UBERON:0001049,5.63e-26,52;UBERON:0005068,5.63e-26,52;UBERON:0006241,5.63e-26,52;UBERON:0007135,5.63e-26,52;UBERON:0001017,1.04e-25,73;UBERON:0004121,2.53e-24,95;UBERON:0000924,2.53e-24,95;UBERON:0006601,2.53e-24,95;UBERON:0000955,3.50e-24,47;UBERON:0006238,3.50e-24,47;UBERON:0002616,2.64e-23,46;UBERON:0003056,1.06e-22,49;UBERON:0010371,1.57e-22,73;UBERON:0010314,8.81e-20,92;UBERON:0003080,1.53e-19,40;UBERON:0002780,5.37e-19,39;UBERON:0001890,5.37e-19,39;UBERON:0006240,5.37e-19,39;UBERON:0002020,1.57e-18,34;UBERON:0003528,1.57e-16,29;UBERON:0002791,1.57e-16,29;UBERON:0001893,1.57e-16,29;UBERON:0000956,6.87e-14,21;UBERON:0001869,6.87e-14,21;UBERON:0000203,6.87e-14,21;UBERON:0000025,3.31e-12,114;UBERON:0002619,3.92e-11,17;UBERON:0004111,5.20e-11,122;UBERON:0002021,3.80e-09,10;UBERON:0000411,3.80e-09,10;UBERON:0001950,3.80e-09,10;UBERON:0003076,5.76e-07,12;UBERON:0003057,5.76e-07,12 | |||
|phase1_expression=2.24208385946712,0,0,0,0,0,0.934450562382103,0,0.140788722151667,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,1.27564935226605,0,0,0.159992422793407,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,3.9119567217402,1.09012578190223,1.97717564461025,1.36100929351998,1.25987779462826,1.43752564364972,0,0,0,1.80081605225163,0.85960031981627,1.03134418455488,3.03474691289397,4.23192783417626,3.1691570175309,4.40497891689872,0.889294796111139,0,0,0,1.79760066311043,1.92109152660777,2.7996195323289,3.78016627328734,2.73422449756797,1.14260393761521,3.75476519617743,2.44981598429908,2.77951865952885,0.919218786610021,2.20231761998777,2.93680877595932,2.30409799884365,2.63772575460388,2.65314166446988,5.2091337055676,1.67509799400829,1.68828783009504,1.68078072554491,1.47314292736834,1.85083185038834,3.35519002485541,1.59025005999687,2.49386148352392,1.73918693221007,0.860423876981386,0,0,0,0,0.280888840263504,0,0,0,1.26759077799012,0,0,0,0.216491041011214,0.760079596425296,0.505524445014783,0.22836775943812,0,0.742210695324124,1.21439728736295,0.913396434936424,0.922461989024234,0.753613202763113,0.587943535678524,1.13099932196708,0,1.15679485535929,0,1.13236794963186,0.662524555381181,0.484875253135222,0,7.31951992528868,3.77004072264219,0.255457055208591,0.11981512450592,0,0.127070227073065,2.24685959107234,0.915001205637253,7.03664371832041,4.86708096538374,4.85859368927628,3.32460871295296,4.38051410282946,0.611036183101898,0.622034853050465,0,1.05220927943237,2.08192708740326,2.5289231487682,1.62055916824814,1.50704817835715,2.04109497453984,1.92170580427275,1.96773621575431,1.29351685369508,1.94011193639558,1.89106080167819,2.11141348996739,1.97276159184817,2.50242524303038,0.696504333044333,0.823128545631774,1.39323986772945,0,0,0,1.24275463521301,1.17263029990548,1.2604344302271,0.473489471170421,0.983821158737019,0.771335564436891,1.16266972375204,0.804820204198858,0.583826711835847,1.15191894939436,1.14917224855367,0.405344047729279,0.730999937126662,1.09775057645525,0.536825675041487,4.41608891984667,7.10041825417063,0,0,2.55945900642281,0.464473343720877,1.03093969057675,1.21010114774006,0.444756087689741,0.570676878337677,0.474529061544512,0.329397909448022,0.502670417600539,0.397912944082302,0.38992817423824,0,0.216138049874694,0.199141273254367,1.32767530667157,1.14248512609729,1.1270773567308,0.610953983535943,1.74557238450863,1.47285221769669,0.885311519739602,0.442830443938806,0.470996183524124,0.370191491765402,0,0.333690211432188,0.196558995113203,0.224862112384854,0.405720242777006,0,0,0,0.162135226775035,0,0,0,0,0,0.358794827043824,0,0.739012760666419,1.32643988239339,1.79261474086228,2.03694102930226,1.64283173801951,1.67506257441816,1.19021820443007,1.17080188714679,3.31033802623001,2.6575762757853,3.18909537314974,2.13022309130459,1.55416483679306,0.723245292907558,0,0,0,0,3.05046120976805,2.81308047821288,0,0.757412781613119,0,0,0,0.238968797952552,0.445597348164788,0,0.809621403349789,0.292255857911312,0,6.10510501201433,0.141940085208269,0.890328018336276,1.46598263418218,0.659880491890142,1.32745138339963,0.485561272309963,0.302323556964751,1.32023555829129,1.18120757152309,0.614870295887855,0.258428293168221,0.363533729477506,0.356497378384721,0,1.05418608574999,1.03135543248187,0.340439605753788,1.08036656418786,1.68166288917581,1.07168517515796,1.59606210278046,1.78368817602071,2.63278432963394,2.43571959291679,0,0.63549621259146,0.220528398054962,0.65954501176592,0.484393280087717,0.965006798850494,0.835606408021955,0.328281799490123,0.291480836629851,1.8542530201051,0.170870880797853,0.619160603889667,0.370389054739423,0,0.27338845544205,0,0,0,0.138199973804424,0,2.21435195506795,1.21991680276109,1.18805874903981,1.04544148007234,0.655087691238533,0.809186078308924,0.826534557253359,0.523511883968059,0,0,0,1.04661582230785,0.496375471371293,1.16670713006429,1.6790777052105,0.675824501963113,1.05621514781179,0.39061315453185,0,0,0,0,1.41907650703115,0.513554785824136,0.389762468933385,0,0,0.120195449519969,0.443068581523732,0.504832249740738,0.304827226619999,0.504130925684203,0.194915761479505,0.192423683280659,0.350630706544707,0.453460767230423,0,0,0.335769232728157,0.579568782096571,0.563047426353546,0.36630324853453,0.643105137237198,0,6.21227026878773,7.36520378411483,5.72895513439397,7.38968684077857,6.16574267793578,3.0215755895588,5.40018000185445,2.70192721934532,3.17199686288943,4.14208249401456,0.415149390336707,1.99512436700516,2.04880326904961,0.486213434136588,1.04806581313991,1.47074806760011,0.666740183404846,1.23621034343337,0,1.26348605881899,0.50695859978048,2.82939512079114,2.06011316433741,1.72867911493147,1.32101578597911,0.476293691283074,1.50649623728312,1.35036454324594,1.64834360321323,1.32479028120958,1.37147700954166,0.532427418478012,0.953744759789284,0.872078499793971,2.07040636913727,1.77690676572521,1.28049581010941,0.526139422875686,2.44447404922551,0,0.949080144993393,2.26560309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|phase1_expression=2.24208385946712,0,0,0,0,0,0.934450562382103,0,0.140788722151667,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,1.27564935226605,0,0,0.159992422793407,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,3.9119567217402,1.09012578190223,1.97717564461025,1.36100929351998,1.25987779462826,1.43752564364972,0,0,0,1.80081605225163,0.85960031981627,1.03134418455488,3.03474691289397,4.23192783417626,3.1691570175309,4.40497891689872,0.889294796111139,0,0,0,1.79760066311043,1.92109152660777,2.7996195323289,3.78016627328734,2.73422449756797,1.14260393761521,3.75476519617743,2.44981598429908,2.77951865952885,0.919218786610021,2.20231761998777,2.93680877595932,2.30409799884365,2.63772575460388,2.65314166446988,5.2091337055676,1.67509799400829,1.68828783009504,1.68078072554491,1.47314292736834,1.85083185038834,3.35519002485541,1.59025005999687,2.49386148352392,1.73918693221007,0.860423876981386,0,0,0,0,0.280888840263504,0,0,0,1.26759077799012,0,0,0,0.216491041011214,0.760079596425296,0.505524445014783,0.22836775943812,0,0.742210695324124,1.21439728736295,0.913396434936424,0.922461989024234,0.753613202763113,0.587943535678524,1.13099932196708,0,1.15679485535929,0,1.13236794963186,0.662524555381181,0.484875253135222,0,7.31951992528868,3.77004072264219,0.255457055208591,0.11981512450592,0,0.127070227073065,2.24685959107234,0.915001205637253,7.03664371832041,4.86708096538374,4.85859368927628,3.32460871295296,4.38051410282946,0.611036183101898,0.622034853050465,0,1.05220927943237,2.08192708740326,2.5289231487682,1.62055916824814,1.50704817835715,2.04109497453984,1.92170580427275,1.96773621575431,1.29351685369508,1.94011193639558,1.89106080167819,2.11141348996739,1.97276159184817,2.50242524303038,0.696504333044333,0.823128545631774,1.39323986772945,0,0,0,1.24275463521301,1.17263029990548,1.2604344302271,0.473489471170421,0.983821158737019,0.771335564436891,1.16266972375204,0.804820204198858,0.583826711835847,1.15191894939436,1.14917224855367,0.405344047729279,0.730999937126662,1.09775057645525,0.536825675041487,4.41608891984667,7.10041825417063,0,0,2.55945900642281,0.464473343720877,1.03093969057675,1.21010114774006,0.444756087689741,0.570676878337677,0.474529061544512,0.329397909448022,0.502670417600539,0.397912944082302,0.38992817423824,0,0.216138049874694,0.199141273254367,1.32767530667157,1.14248512609729,1.1270773567308,0.610953983535943,1.74557238450863,1.47285221769669,0.885311519739602,0.442830443938806,0.470996183524124,0.370191491765402,0,0.333690211432188,0.196558995113203,0.224862112384854,0.405720242777006,0,0,0,0.162135226775035,0,0,0,0,0,0.358794827043824,0,0.739012760666419,1.32643988239339,1.79261474086228,2.03694102930226,1.64283173801951,1.67506257441816,1.19021820443007,1.17080188714679,3.31033802623001,2.6575762757853,3.18909537314974,2.13022309130459,1.55416483679306,0.723245292907558,0,0,0,0,3.05046120976805,2.81308047821288,0,0.757412781613119,0,0,0,0.238968797952552,0.445597348164788,0,0.809621403349789,0.292255857911312,0,6.10510501201433,0.141940085208269,0.890328018336276,1.46598263418218,0.659880491890142,1.32745138339963,0.485561272309963,0.302323556964751,1.32023555829129,1.18120757152309,0.614870295887855,0.258428293168221,0.363533729477506,0.356497378384721,0,1.05418608574999,1.03135543248187,0.340439605753788,1.08036656418786,1.68166288917581,1.07168517515796,1.59606210278046,1.78368817602071,2.63278432963394,2.43571959291679,0,0.63549621259146,0.220528398054962,0.65954501176592,0.484393280087717,0.965006798850494,0.835606408021955,0.328281799490123,0.291480836629851,1.8542530201051,0.170870880797853,0.619160603889667,0.370389054739423,0,0.27338845544205,0,0,0,0.138199973804424,0,2.21435195506795,1.21991680276109,1.18805874903981,1.04544148007234,0.655087691238533,0.809186078308924,0.826534557253359,0.523511883968059,0,0,0,1.04661582230785,0.496375471371293,1.16670713006429,1.6790777052105,0.675824501963113,1.05621514781179,0.39061315453185,0,0,0,0,1.41907650703115,0.513554785824136,0.389762468933385,0,0,0.120195449519969,0.443068581523732,0.504832249740738,0.304827226619999,0.504130925684203,0.194915761479505,0.192423683280659,0.350630706544707,0.453460767230423,0,0,0.335769232728157,0.579568782096571,0.563047426353546,0.36630324853453,0.643105137237198,0,6.21227026878773,7.36520378411483,5.72895513439397,7.38968684077857,6.16574267793578,3.0215755895588,5.40018000185445,2.70192721934532,3.17199686288943,4.14208249401456,0.415149390336707,1.99512436700516,2.04880326904961,0.486213434136588,1.04806581313991,1.47074806760011,0.666740183404846,1.23621034343337,0,1.26348605881899,0.50695859978048,2.82939512079114,2.06011316433741,1.72867911493147,1.32101578597911,0.476293691283074,1.50649623728312,1.35036454324594,1.64834360321323,1.32479028120958,1.37147700954166,0.532427418478012,0.953744759789284,0.872078499793971,2.07040636913727,1.77690676572521,1.28049581010941,0.526139422875686,2.44447404922551,0,0.949080144993393,2.26560309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| ||
|short_description=p9@Pcdhga11,p9@Pcdhga12,p9@Pcdhga3,p9@Pcdhga8,p9@Pcdhga9,p9@Pcdhgb6,p9@Pcdhgc3,p9@Pcdhgc4,p9@Pcdhgc5 | |short_description=p9@Pcdhga11,p9@Pcdhga12,p9@Pcdhga3,p9@Pcdhga8,p9@Pcdhga9,p9@Pcdhgb6,p9@Pcdhgc3,p9@Pcdhgc4,p9@Pcdhgc5 | ||
}} | }} |
Latest revision as of 05:56, 27 September 2015
Short description: | p9@Pcdhga11, p9@Pcdhga12, p9@Pcdhga3, p9@Pcdhga8, p9@Pcdhga9, p9@Pcdhgb6, p9@Pcdhgc3, p9@Pcdhgc4, p9@Pcdhgc5 |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Pcdhga11_5end, CAGE_peak_9_at_Pcdhga12_5end, CAGE_peak_9_at_Pcdhga3_5end, CAGE_peak_9_at_Pcdhga8_5end, CAGE_peak_9_at_Pcdhga9_5end, CAGE_peak_9_at_Pcdhgb6_5end, CAGE_peak_9_at_Pcdhgc3_5end, CAGE_peak_9_at_Pcdhgc4_5end, CAGE_peak_9_at_Pcdhgc5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1715 |
Association with transcript: | 378bp_to_ENSMUST00000044851, NM_033595, uc008erd.1_5end |
EntrezGene: | 93703,93706,93707,93708,93711,93716,93717,93723,93724 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.08e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.08e-11 | 23 |
ectodermal cell | 1.15e-09 | 44 |
neurectodermal cell | 1.15e-09 | 44 |
neural cell | 1.71e-09 | 43 |