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{{CL
{{CL
|id=CL:0002621
|alt_id=
|name=gingival epithelial cell
|namespace=cell
|def=
|xref=
|is_a=CL:0000066;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-14T12:46:28Z
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002621
|is_a=CL:0002251
|is_obsolete=
|located_in=
|located_in=
|name=gingival epithelial cell
|namespace=FANTOM
|obo_creation_date=2011-03-14T12:46:28Z
|part_of=UBERON:0001949
|part_of=UBERON:0001949
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
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}}
}}

Latest revision as of 16:46, 12 September 2014

Name:gingival epithelial cell
Namespace:FANTOM
Created by:tmeehan
Creation date:2011-03-14T12:46:28Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002251(epithelial cell of alimentary canal)
part_of:UBERON:0001949(gingival epithelium)



Children


derives from:FF:0000254 (human gingival epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
  • 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
  • 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))

Mouse (Mus musculus)

  • 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
  • 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
  • 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002621 (gingival epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.06e-99FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_243f5f632b5af509e73b9681d3127061p@chr4:143470541..143470551, +
4.06e-99FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_243f5f632b5af509e73b9681d3127061p@chr4:143470541..143470551, +
1.52e-87FFCP PHASE1:Hg19::chr17:73753856..73753871,+#_56317ecb69cd14afe66a6204d776e310p1@CU674593
1.52e-87FFCP PHASE2:Hg19::chr1:14465017..14465026,+#_56317ecb69cd14afe66a6204d776e310p@chr1:14465017..14465026, +
1.52e-87FFCP PHASE1:Hg19::chr1:14465017..14465026,+#_56317ecb69cd14afe66a6204d776e310p@chr1:14465017..14465026, +
1.52e-87FFCP PHASE2:Hg19::chr17:73753856..73753871,+#_56317ecb69cd14afe66a6204d776e310p1@CU674593
2.28e-85FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_387427adfddfbb754ff68c43a30d2a1fp3@GSDMC
2.28e-85FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_387427adfddfbb754ff68c43a30d2a1fp3@GSDMC
5.41e-85FFCP PHASE1:Hg19::chr11:93754560..93754567,+#_3f35649b32fb5da4d843aaed22939881p@chr11:93754560..93754567, +
5.41e-85FFCP PHASE2:Hg19::chr11:93754560..93754567,+#_3f35649b32fb5da4d843aaed22939881p@chr11:93754560..93754567, +
2.27e-84FFCP PHASE2:Hg19::chr10:105791095..105791110,-#_414e901e84096c5c625b19afc07799dbp@chr10:105791095..105791110, -
2.27e-84FFCP PHASE1:Hg19::chr10:105791095..105791110,-#_414e901e84096c5c625b19afc07799dbp@chr10:105791095..105791110, -
1.01e-74FFCP PHASE2:Hg19::chr1:153533849..153533860,-#_aa577964d4bcdcfcda24cca362212834p@chr1:153533849..153533860, -
1.01e-74FFCP PHASE1:Hg19::chr1:153533849..153533860,-#_aa577964d4bcdcfcda24cca362212834p@chr1:153533849..153533860, -
1.01e-74FFCP PHASE2:Hg19::chr7:40883542..40883550,+#_aa577964d4bcdcfcda24cca362212834p@chr7:40883542..40883550, +
1.01e-74FFCP PHASE1:Hg19::chr7:40883542..40883550,+#_aa577964d4bcdcfcda24cca362212834p@chr7:40883542..40883550, +
2.14e-74FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_78f36e27165d7edb75453947d66cdbd4p@chr3:190252374..190252383, -
2.14e-74FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_78f36e27165d7edb75453947d66cdbd4p@chr3:190252374..190252383, -
4.55e-74FFCP PHASE2:Hg19::chr21:44957893..44957903,-#_01339562b3f8f4e9b1a4f1c10c7ca8edp@chr21:44957893..44957903, -
4.55e-74FFCP PHASE1:Hg19::chr21:44957893..44957903,-#_01339562b3f8f4e9b1a4f1c10c7ca8edp@chr21:44957893..44957903, -
9.64e-74FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_712cb62557b4fa6dd8df5e52ca083d34p@chr10:106205489..106205498, +
9.64e-74FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_712cb62557b4fa6dd8df5e52ca083d34p@chr10:106205489..106205498, +
3.35e-66FFCP PHASE2:Hg19::chr15:40531729..40531738,+#_e3c05fb1eda25f87a8b9c4933cc02091p15@PAK6
3.35e-66FFCP PHASE1:Hg19::chr15:40531729..40531738,+#_e3c05fb1eda25f87a8b9c4933cc02091p15@PAK6
4.71e-66FFCP PHASE1:Hg19::chr16:82671490..82671521,+#_a6519b1c567baf51a23fb755f50b8cc0p@chr16:82671490..82671521, +
4.71e-66FFCP PHASE2:Hg19::chr16:82671490..82671521,+#_a6519b1c567baf51a23fb755f50b8cc0p@chr16:82671490..82671521, +
6.53e-66FFCP PHASE1:Hg19::chr9:108870138..108870152,+#_7827cc2fa9ac5ee375fd0678bd768d6ap1@uc004bcw.2
6.53e-66FFCP PHASE2:Hg19::chr9:108870138..108870152,+#_7827cc2fa9ac5ee375fd0678bd768d6ap1@uc004bcw.2
1.22e-59FFCP PHASE1:Hg19::chr11:13030878..13030889,+#_3fd18694aa30bc14f1cab6550e7634b5p2@RASSF10
1.22e-59FFCP PHASE2:Hg19::chr11:13030878..13030889,+#_3fd18694aa30bc14f1cab6550e7634b5p2@RASSF10
1.83e-59FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_da0504bd102e73ccdefdc9eb6fdf9e69p@chr18:20493879..20493891, +
1.83e-59FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_da0504bd102e73ccdefdc9eb6fdf9e69p@chr18:20493879..20493891, +
2.73e-59FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_ce18cdd2e6cd732b19802eecdb03f44dp@chr8:124850358..124850380, +
2.73e-59FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_ce18cdd2e6cd732b19802eecdb03f44dp@chr8:124850358..124850380, +
8.69e-55FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_30f155dc9a986e7638c87e06da812793p@chr13:30259768..30259777, +
8.69e-55FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_30f155dc9a986e7638c87e06da812793p@chr13:30259768..30259777, +
1.81e-54FFCP PHASE2:Hg19::chr5:167247119..167247129,+#_9d4948b420b30d21e5d73791be5b8924p@chr5:167247119..167247129, +
1.81e-54FFCP PHASE1:Hg19::chr5:167247119..167247129,+#_9d4948b420b30d21e5d73791be5b8924p@chr5:167247119..167247129, +
2.17e-54FFCP PHASE2:Hg19::chr5:52619638..52619641,+#_8d0a02eb673a8be5fa0bcfbb4c4838dcp@chr5:52619638..52619641, +
2.17e-54FFCP PHASE1:Hg19::chr5:52619638..52619641,+#_8d0a02eb673a8be5fa0bcfbb4c4838dcp@chr5:52619638..52619641, +
2.17e-54FFCP PHASE1:Hg19::chr13:75017232..75017235,+#_8d0a02eb673a8be5fa0bcfbb4c4838dcp@chr13:75017232..75017235, +
2.17e-54FFCP PHASE2:Hg19::chr13:75017232..75017235,+#_8d0a02eb673a8be5fa0bcfbb4c4838dcp@chr13:75017232..75017235, +
5.41e-54FFCP PHASE2:Hg19::chr11:129511955..129511961,-#_bb1466a75f401bc907bbd6b1cd75c096p@chr11:129511955..129511961, -
5.41e-54FFCP PHASE1:Hg19::chr11:129511955..129511961,-#_bb1466a75f401bc907bbd6b1cd75c096p@chr11:129511955..129511961, -
2.87e-53FFCP PHASE2:Hg19::chr1:183213228..183213235,+#_1da6ecb4a1f34496adc54365d2c63fccp@chr1:183213228..183213235, +
2.87e-53FFCP PHASE1:Hg19::chr1:183213228..183213235,+#_1da6ecb4a1f34496adc54365d2c63fccp@chr1:183213228..183213235, +
2.87e-53FFCP PHASE2:Hg19::chr3:52440350..52440361,-#_1da6ecb4a1f34496adc54365d2c63fccp@chr3:52440350..52440361, -
2.87e-53FFCP PHASE1:Hg19::chr3:52440350..52440361,-#_1da6ecb4a1f34496adc54365d2c63fccp@chr3:52440350..52440361, -
4.89e-53FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_c57d936aa1cdbf3e686f23450276a8dfp@chr10:5567644..5567657, +
4.89e-53FFCP PHASE2:Hg19::chr8:130798565..130798567,-#_c57d936aa1cdbf3e686f23450276a8dfp4@GSDMC
4.89e-53FFCP PHASE1:Hg19::chr8:130798565..130798567,-#_c57d936aa1cdbf3e686f23450276a8dfp4@GSDMC
4.89e-53FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_c57d936aa1cdbf3e686f23450276a8dfp@chr10:5567644..5567657, +
6.39e-53FFCP PHASE1:Hg19::chr17:73720330..73720338,+#_85343325dcb008c533e3b9fb09dc8002p22@ITGB4
6.39e-53FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_85343325dcb008c533e3b9fb09dc8002p@chr10:106205503..106205518, +
6.39e-53FFCP PHASE2:Hg19::chr17:73720330..73720338,+#_85343325dcb008c533e3b9fb09dc8002p22@ITGB4
6.39e-53FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_85343325dcb008c533e3b9fb09dc8002p@chr10:106205503..106205518, +
6.12e-50FFCP PHASE2:Hg19::chr19:10665857..10665900,-#_8af6b8542216d05619ddcc5e1656904ap@chr19:10665857..10665900, -
6.12e-50FFCP PHASE1:Hg19::chr19:10665857..10665900,-#_8af6b8542216d05619ddcc5e1656904ap@chr19:10665857..10665900, -
7.24e-50FFCP PHASE2:Hg19::chr11:392625..392628,+#_d56716b3c4a73d589c26505cb8afdf29p13@PKP3
7.24e-50FFCP PHASE1:Hg19::chr11:392625..392628,+#_d56716b3c4a73d589c26505cb8afdf29p13@PKP3
5.68e-46FFCP PHASE2:Hg19::chr12:116955659..116955671,+#_611485f9778865811398e80a2f519edcp1@ENST00000552992
5.68e-46FFCP PHASE2:Hg19::chr2:231649545..231649550,-#_611485f9778865811398e80a2f519edcp@chr2:231649545..231649550, -
5.68e-46FFCP PHASE1:Hg19::chr12:116955659..116955671,+#_611485f9778865811398e80a2f519edcp1@ENST00000552992
5.68e-46FFCP PHASE1:Hg19::chr2:231649545..231649550,-#_611485f9778865811398e80a2f519edcp@chr2:231649545..231649550, -
6.94e-44FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_4b587016d60f3f620efef57587ce9222p@chr11:13073062..13073067, +
6.94e-44FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_4b587016d60f3f620efef57587ce9222p@chr11:13073062..13073067, +
9.28e-44FFCP PHASE2:Hg19::chr6:29643393..29643442,-#_a0fb6d85b94fef48c00e4d0c0f915866p@chr6:29643393..29643442, -
9.28e-44FFCP PHASE1:Hg19::chr6:29643393..29643442,-#_a0fb6d85b94fef48c00e4d0c0f915866p@chr6:29643393..29643442, -
1.43e-43FFCP PHASE2:Hg19::chr8:105212349..105212367,+#_dcec06988c0d160f18d3d44f69cdcf4fp@chr8:105212349..105212367, +
1.43e-43FFCP PHASE1:Hg19::chr8:105212349..105212367,+#_dcec06988c0d160f18d3d44f69cdcf4fp@chr8:105212349..105212367, +
1.92e-43FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_3b424b97a3c0097d6700e7cfdffe1f3ap2@HEPHL1
1.92e-43FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_3b424b97a3c0097d6700e7cfdffe1f3ap2@HEPHL1
2.21e-43FFCP PHASE2:Hg19::chr21:44957855..44957891,-#_a13f64d8b1226f88f25920ff1da56d9cp@chr21:44957855..44957891, -
2.21e-43FFCP PHASE1:Hg19::chr21:44957855..44957891,-#_a13f64d8b1226f88f25920ff1da56d9cp@chr21:44957855..44957891, -
4.55e-43FFCP PHASE2:Hg19::chr2:43768420..43768427,-#_2034d043a2667d939a7d4144a9a94738p5@THADA
4.55e-43FFCP PHASE1:Hg19::chr2:43768420..43768427,-#_2034d043a2667d939a7d4144a9a94738p5@THADA
4.55e-43FFCP PHASE2:Hg19::chr9:34662651..34662656,-#_2034d043a2667d939a7d4144a9a94738p1@CCL27
4.55e-43FFCP PHASE1:Hg19::chr9:34662651..34662656,-#_2034d043a2667d939a7d4144a9a94738p1@CCL27
6.07e-43FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_5cee8a0dd15475f15fff786b033c5de0p@chr18:9617195..9617198, -
6.07e-43FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_5cee8a0dd15475f15fff786b033c5de0p@chr18:9617195..9617198, -
1.91e-42FFCP PHASE2:Hg19::chr1:153534027..153534037,+#_cdfbebceb6fc0caeaac346e44a12bbf6p@chr1:153534027..153534037, +
1.91e-42FFCP PHASE1:Hg19::chr1:153534027..153534037,+#_cdfbebceb6fc0caeaac346e44a12bbf6p@chr1:153534027..153534037, +
5.06e-41FFCP PHASE2:Hg19::chr7:40883521..40883532,+#_c1013c28f39a50619dc8cd663d3c59cbp@chr7:40883521..40883532, +
5.06e-41FFCP PHASE1:Hg19::chr7:40883521..40883532,+#_c1013c28f39a50619dc8cd663d3c59cbp@chr7:40883521..40883532, +
6.64e-41FFCP PHASE2:Hg19::chr3:149510368..149510386,-#_d5e40a52b5ed7e0eee9e7c1b32c4c0b8p5@ANKUB1
6.64e-41FFCP PHASE1:Hg19::chr3:149510368..149510386,-#_d5e40a52b5ed7e0eee9e7c1b32c4c0b8p5@ANKUB1
1.96e-40FFCP PHASE2:Hg19::chr1:183213300..183213316,+#_8df9c4409fd7f7071a9236a2f7f6c86ap@chr1:183213300..183213316, +
1.96e-40FFCP PHASE1:Hg19::chr1:183213300..183213316,+#_8df9c4409fd7f7071a9236a2f7f6c86ap@chr1:183213300..183213316, +
2.93e-40FFCP PHASE1:Hg19::chr5:52552639..52552656,-#_0a87b72e1a099f4099b8e8dd8d42a969p@chr5:52552639..52552656, -
2.93e-40FFCP PHASE2:Hg19::chr5:52552639..52552656,-#_0a87b72e1a099f4099b8e8dd8d42a969p@chr5:52552639..52552656, -
4.38e-40FFCP PHASE2:Hg19::chr4:15920326..15920338,+#_d0079cb0a9cd18fc3e7f1b64329e22bcp@chr4:15920326..15920338, +
4.38e-40FFCP PHASE1:Hg19::chrX:19692351..19692356,-#_d0079cb0a9cd18fc3e7f1b64329e22bcp@chrX:19692351..19692356, -
4.38e-40FFCP PHASE2:Hg19::chrX:19692351..19692356,-#_d0079cb0a9cd18fc3e7f1b64329e22bcp@chrX:19692351..19692356, -
4.38e-40FFCP PHASE1:Hg19::chr4:15920326..15920338,+#_d0079cb0a9cd18fc3e7f1b64329e22bcp@chr4:15920326..15920338, +
1.23e-38FFCP PHASE2:Hg19::chr2:69026957..69026966,+#_fe6dda236e6e45c503afbd989e582721p@chr2:69026957..69026966, +
1.23e-38FFCP PHASE1:Hg19::chr2:69026957..69026966,+#_fe6dda236e6e45c503afbd989e582721p@chr2:69026957..69026966, +
2.18e-38FFCP PHASE2:Hg19::chr7:56051493..56051514,+#_c0fb04e37b501cb331f8c8ea5dfd3b72p@chr7:56051493..56051514, +
2.18e-38FFCP PHASE1:Hg19::chr7:56051493..56051514,+#_c0fb04e37b501cb331f8c8ea5dfd3b72p@chr7:56051493..56051514, +
2.64e-38FFCP PHASE2:Hg19::chr3:52099097..52099134,-#_02762cf39b439cb32a01da887d2410abp1@C3orf74
2.64e-38FFCP PHASE1:Hg19::chr3:52099097..52099134,-#_02762cf39b439cb32a01da887d2410abp1@C3orf74

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