FFCP PHASE1:Mm9::chr18:31607002..31607030,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20983 | |EntrezGene=20983 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P40749,Q571C5 | |UniProt=P40749,Q571C5 | ||
|association_with_transcript=38bp_to_ENSMUST00000025110,NM_009308,uc008ehy.1_5end | |association_with_transcript=38bp_to_ENSMUST00000025110,NM_009308,uc008ehy.1_5end | ||
|cluster_id=chr18:31607002..31607030,- | |||
|description=CAGE_peak_1_at_Syt4_5end | |description=CAGE_peak_1_at_Syt4_5end | ||
|id=chr18:31607002..31607030,- | |id=chr18:31607002..31607030,- | ||
|ontology_enrichment_celltype=CL:0000540!5.59e-16!33;CL:0000047!5.59e-16!33;CL:0000031!5.59e-16!33;CL:0000404!5.59e-16!33;CL:0000221!7.90e-14!44;CL:0000133!7.90e-14!44;CL:0002319!9.27e-14!43;CL:0000117!4.62e-13!23;CL:0000337!4.62e-13!23;CL:0000393!8.19e-11!39;CL:0000211!8.19e-11!39;CL:0000055!3.25e-09!50 | |ontology_enrichment_celltype=CL:0000540!5.59e-16!33;CL:0000047!5.59e-16!33;CL:0000031!5.59e-16!33;CL:0000404!5.59e-16!33;CL:0000221!7.90e-14!44;CL:0000133!7.90e-14!44;CL:0002319!9.27e-14!43;CL:0000117!4.62e-13!23;CL:0000337!4.62e-13!23;CL:0000393!8.19e-11!39;CL:0000211!8.19e-11!39;CL:0000055!3.25e-09!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.29e-18,33;CL:0000047,2.29e-18,33;CL:0000031,2.29e-18,33;CL:0000404,2.29e-18,33;CL:0000117,5.78e-15,23;CL:0000337,5.78e-15,23;CL:0000221,7.16e-15,44;CL:0000133,7.16e-15,44;CL:0002319,8.77e-15,43;CL:0000393,2.24e-13,39;CL:0000211,2.24e-13,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.50e-35!102;UBERON:0000924!3.50e-35!102;UBERON:0006601!3.50e-35!102;UBERON:0000073!1.45e-32!75;UBERON:0001016!1.45e-32!75;UBERON:0001017!5.34e-31!73;UBERON:0005743!5.34e-31!73;UBERON:0002346!7.26e-31!71;UBERON:0003075!7.26e-31!71;UBERON:0007284!7.26e-31!71;UBERON:0000033!1.81e-25!63;UBERON:0001049!6.98e-25!52;UBERON:0005068!6.98e-25!52;UBERON:0006241!6.98e-25!52;UBERON:0007135!6.98e-25!52;UBERON:0000955!1.18e-23!50;UBERON:0006238!1.18e-23!50;UBERON:0002616!4.34e-23!49;UBERON:0003056!1.18e-21!49;UBERON:0003080!9.60e-19!40;UBERON:0002020!3.27e-18!34;UBERON:0002780!5.18e-18!39;UBERON:0001890!5.18e-18!39;UBERON:0006240!5.18e-18!39;UBERON:0002791!2.12e-15!29;UBERON:0003528!2.12e-15!29;UBERON:0001893!2.12e-15!29;UBERON:0007811!1.24e-12!86;UBERON:0000956!6.82e-11!21;UBERON:0001869!6.82e-11!21;UBERON:0000203!6.82e-11!21;UBERON:0000153!1.17e-10!94;UBERON:0002619!6.79e-09!17;UBERON:0002021!4.88e-08!10;UBERON:0000411!4.88e-08!10;UBERON:0001950!4.88e-08!10 | |ontology_enrichment_uberon=UBERON:0004121!3.50e-35!102;UBERON:0000924!3.50e-35!102;UBERON:0006601!3.50e-35!102;UBERON:0000073!1.45e-32!75;UBERON:0001016!1.45e-32!75;UBERON:0001017!5.34e-31!73;UBERON:0005743!5.34e-31!73;UBERON:0002346!7.26e-31!71;UBERON:0003075!7.26e-31!71;UBERON:0007284!7.26e-31!71;UBERON:0000033!1.81e-25!63;UBERON:0001049!6.98e-25!52;UBERON:0005068!6.98e-25!52;UBERON:0006241!6.98e-25!52;UBERON:0007135!6.98e-25!52;UBERON:0000955!1.18e-23!50;UBERON:0006238!1.18e-23!50;UBERON:0002616!4.34e-23!49;UBERON:0003056!1.18e-21!49;UBERON:0003080!9.60e-19!40;UBERON:0002020!3.27e-18!34;UBERON:0002780!5.18e-18!39;UBERON:0001890!5.18e-18!39;UBERON:0006240!5.18e-18!39;UBERON:0002791!2.12e-15!29;UBERON:0003528!2.12e-15!29;UBERON:0001893!2.12e-15!29;UBERON:0007811!1.24e-12!86;UBERON:0000956!6.82e-11!21;UBERON:0001869!6.82e-11!21;UBERON:0000203!6.82e-11!21;UBERON:0000153!1.17e-10!94;UBERON:0002619!6.79e-09!17;UBERON:0002021!4.88e-08!10;UBERON:0000411!4.88e-08!10;UBERON:0001950!4.88e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.21e-38,95;UBERON:0000924,9.21e-38,95;UBERON:0006601,9.21e-38,95;UBERON:0001016,1.86e-36,75;UBERON:0001017,1.20e-34,73;UBERON:0002346,1.99e-32,64;UBERON:0003075,1.99e-32,64;UBERON:0007284,1.99e-32,64;UBERON:0010371,1.73e-31,73;UBERON:0000073,1.76e-28,54;UBERON:0001049,5.01e-27,52;UBERON:0005068,5.01e-27,52;UBERON:0006241,5.01e-27,52;UBERON:0007135,5.01e-27,52;UBERON:0003056,1.03e-24,49;UBERON:0000955,1.89e-23,47;UBERON:0006238,1.89e-23,47;UBERON:0002616,8.24e-23,46;UBERON:0003080,2.58e-21,40;UBERON:0010314,4.18e-21,92;UBERON:0002020,1.12e-20,34;UBERON:0002780,1.83e-20,39;UBERON:0001890,1.83e-20,39;UBERON:0006240,1.83e-20,39;UBERON:0003528,2.11e-17,29;UBERON:0002791,2.11e-17,29;UBERON:0001893,2.11e-17,29;UBERON:0000956,3.67e-12,21;UBERON:0001869,3.67e-12,21;UBERON:0000203,3.67e-12,21;UBERON:0002619,7.71e-10,17;UBERON:0002021,4.12e-09,10;UBERON:0000411,4.12e-09,10;UBERON:0001950,4.12e-09,10 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.7035931074359,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,0,0.194429899074283,0,0,0,0,0,0,0,0,77.2848880483664,80.406628849349,50.7065122804943,0,0,0,0,0,1.49800055259202,1.15265491596466,37.328260431052,38.8817102395269,33.8623187775725,41.4193927385515,35.3389665522582,60.7554364106172,39.4883340595134,34.0110951045708,79.2834343195599,76.6124028511126,88.938182755365,48.7979264601717,59.0095301235542,57.3004707612436,80.4047037123977,81.0378158445619,80.8302730739325,87.5046898856793,77.5925660355111,99.5373040707105,89.3569081331572,116.153487884129,0,0,0,0,0.649776417447669,0,5.47733238513832,0,0,0,2.95771181531029,0,0,0,0,0,0,4.79572294820052,0,13.5082346548991,3.64319186208885,10.6562917409249,9.22461989024234,14.9215414147096,17.0503625346772,4.39833069653864,0,1.73519228303894,0,0,0,0,0,147.56152169382,175.935233723302,1.02182822083437,0,0,0,117.735442572191,88.7551169468135,95.6229619578898,123.936740297093,120.186264945255,103.062870101542,85.5011456367083,0.101839363850316,0,0,16.2040229032585,1.95180664444056,12.4147136394075,18.3663372401456,29.2367346601287,30.9566071138542,30.1067242669397,22.7695190680141,32.337921342377,0,0.189106080167819,0,0,0.278047249225598,0.696504333044333,0.411564272815887,0,0,0,0,0,0.234526059981096,0,0.473489471170421,0.393528463494808,0,0.232533944750408,0.268273401399619,0,0.822799249567402,0.492502392237286,0.0810688095458557,0.146199987425332,0,0.134206418760372,76.1249613802141,171.644893448646,0,1.85115396664481,0.639864751605702,0.928946687441754,0.515469845288373,1.00841762311671,0.889512175379481,1.14135375667535,0.949058123089023,2.14108641141214,2.5133520880027,0.795825888164603,1.36474860983384,0.898819408654221,1.51296634912286,1.1948476395262,0.189667900953082,1.5994791765362,0,0.407302655690628,0.775809948670503,0.420814919341911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.325929952884052,0.339490171550376,0.469380496577004,0,0,0,0.157635144106191,0,0.159454768657487,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,102.752377592187,92.2455973480639,0,0,23.0321000173867,22.2550084249084,42.6538327510942,26.7645053706858,43.2229427719845,47.8399337033127,5.26253912177363,13.4437694639203,18.9738133414331,52.0540532603327,0.141940085208269,0,0,0,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0.307435147943927,0.516856586336442,0.363533729477506,0.356497378384721,1.8962205476149,1.05418608574999,0,120.515620436841,3.78128297465751,1.03486947026204,3.64372959553707,6.91626911204867,13.0209236849512,19.7458824722545,14.6143175575008,0,0,8.82113592219848,2.80306630000516,2.9063596805263,6.45348296731268,7.16234064018819,7.71462228801788,0.582961673259701,87.1498919449396,0,0.206386867963223,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0.316335993581135,0.406638934253697,0.972048067396211,1.46361807210128,1.31017538247707,1.75323650300267,2.0663363931334,0,1.42576470620972,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0,0,0,0,0,0.405450430580328,0.102710957164827,0,0.358053391334963,0,0,0.295379054349154,0.100966449948148,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,3.47741269257943,0,0,1.07184189539533,0,114.644624051265,98.0492753760287,114.00620717444,94.1755439243408,95.9115527678899,77.8055714311392,104.62848753593,117.984155244746,128.692444151514,112.353987650145,3.84013186061454,12.369771075432,12.6342868258059,11.6691224192781,13.8344687334468,17.4651333027513,17.7797382241292,17.512979865306,24.7107791385698,19.7103825175762,21.2922611907801,20.1830185283102,23.6913013898803,22.6008787989189,22.3423974237336,20.0043350338891,18.7732608030666,17.3618298417335,19.3680373377554,18.6942628570685,14.7433778525729,20.7646693206425,17.8827142460491,21.0752304116876,20.6099543109574,20.5613497176774,16.097661612804,19.2040889349625,20.9138335322627,15.7119836064167,18.2697927911228,15.2681947682123,16.3692417267876,17.3529262128282,14.2750892126045,40.7191242038852,11.462648813825,16.9748132698156,7.07766828654721,3.52946270591225,4.63735671240843 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|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.7035931074359,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.436050312760893,0,0.194429899074283,0,0,0,0,0,0,0,0,77.2848880483664,80.406628849349,50.7065122804943,0,0,0,0,0,1.49800055259202,1.15265491596466,37.328260431052,38.8817102395269,33.8623187775725,41.4193927385515,35.3389665522582,60.7554364106172,39.4883340595134,34.0110951045708,79.2834343195599,76.6124028511126,88.938182755365,48.7979264601717,59.0095301235542,57.3004707612436,80.4047037123977,81.0378158445619,80.8302730739325,87.5046898856793,77.5925660355111,99.5373040707105,89.3569081331572,116.153487884129,0,0,0,0,0.649776417447669,0,5.47733238513832,0,0,0,2.95771181531029,0,0,0,0,0,0,4.79572294820052,0,13.5082346548991,3.64319186208885,10.6562917409249,9.22461989024234,14.9215414147096,17.0503625346772,4.39833069653864,0,1.73519228303894,0,0,0,0,0,147.56152169382,175.935233723302,1.02182822083437,0,0,0,117.735442572191,88.7551169468135,95.6229619578898,123.936740297093,120.186264945255,103.062870101542,85.5011456367083,0.101839363850316,0,0,16.2040229032585,1.95180664444056,12.4147136394075,18.3663372401456,29.2367346601287,30.9566071138542,30.1067242669397,22.7695190680141,32.337921342377,0,0.189106080167819,0,0,0.278047249225598,0.696504333044333,0.411564272815887,0,0,0,0,0,0.234526059981096,0,0.473489471170421,0.393528463494808,0,0.232533944750408,0.268273401399619,0,0.822799249567402,0.492502392237286,0.0810688095458557,0.146199987425332,0,0.134206418760372,76.1249613802141,171.644893448646,0,1.85115396664481,0.639864751605702,0.928946687441754,0.515469845288373,1.00841762311671,0.889512175379481,1.14135375667535,0.949058123089023,2.14108641141214,2.5133520880027,0.795825888164603,1.36474860983384,0.898819408654221,1.51296634912286,1.1948476395262,0.189667900953082,1.5994791765362,0,0.407302655690628,0.775809948670503,0.420814919341911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.325929952884052,0.339490171550376,0.469380496577004,0,0,0,0.157635144106191,0,0.159454768657487,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,102.752377592187,92.2455973480639,0,0,23.0321000173867,22.2550084249084,42.6538327510942,26.7645053706858,43.2229427719845,47.8399337033127,5.26253912177363,13.4437694639203,18.9738133414331,52.0540532603327,0.141940085208269,0,0,0,0,0.485561272309963,0.604647113929502,0.188605079755898,0.295301892880773,0.307435147943927,0.516856586336442,0.363533729477506,0.356497378384721,1.8962205476149,1.05418608574999,0,120.515620436841,3.78128297465751,1.03486947026204,3.64372959553707,6.91626911204867,13.0209236849512,19.7458824722545,14.6143175575008,0,0,8.82113592219848,2.80306630000516,2.9063596805263,6.45348296731268,7.16234064018819,7.71462228801788,0.582961673259701,87.1498919449396,0,0.206386867963223,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0.316335993581135,0.406638934253697,0.972048067396211,1.46361807210128,1.31017538247707,1.75323650300267,2.0663363931334,0,1.42576470620972,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0,0,0,0,0,0.405450430580328,0.102710957164827,0,0.358053391334963,0,0,0.295379054349154,0.100966449948148,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,3.47741269257943,0,0,1.07184189539533,0,114.644624051265,98.0492753760287,114.00620717444,94.1755439243408,95.9115527678899,77.8055714311392,104.62848753593,117.984155244746,128.692444151514,112.353987650145,3.84013186061454,12.369771075432,12.6342868258059,11.6691224192781,13.8344687334468,17.4651333027513,17.7797382241292,17.512979865306,24.7107791385698,19.7103825175762,21.2922611907801,20.1830185283102,23.6913013898803,22.6008787989189,22.3423974237336,20.0043350338891,18.7732608030666,17.3618298417335,19.3680373377554,18.6942628570685,14.7433778525729,20.7646693206425,17.8827142460491,21.0752304116876,20.6099543109574,20.5613497176774,16.097661612804,19.2040889349625,20.9138335322627,15.7119836064167,18.2697927911228,15.2681947682123,16.3692417267876,17.3529262128282,14.2750892126045,40.7191242038852,11.462648813825,16.9748132698156,7.07766828654721,3.52946270591225,4.63735671240843 | ||
|short_description=p1@Syt4 | |short_description=p1@Syt4 | ||
}} | }} |
Latest revision as of 03:16, 27 September 2015
Short description: | p1@Syt4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Syt4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 38bp_to_ENSMUST00000025110, NM_009308, uc008ehy.1_5end |
EntrezGene: | Syt4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.29e-18 | 33 |
neuronal stem cell | 2.29e-18 | 33 |
neuroblast | 2.29e-18 | 33 |
electrically signaling cell | 2.29e-18 | 33 |
CNS neuron (sensu Vertebrata) | 5.78e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.78e-15 | 23 |
ectodermal cell | 7.16e-15 | 44 |
neurectodermal cell | 7.16e-15 | 44 |
neural cell | 8.77e-15 | 43 |
electrically responsive cell | 2.24e-13 | 39 |
electrically active cell | 2.24e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 9.21e-38 | 95 |
ectoderm | 9.21e-38 | 95 |
presumptive ectoderm | 9.21e-38 | 95 |
nervous system | 1.86e-36 | 75 |
central nervous system | 1.20e-34 | 73 |
neurectoderm | 1.99e-32 | 64 |
neural plate | 1.99e-32 | 64 |
presumptive neural plate | 1.99e-32 | 64 |
ecto-epithelium | 1.73e-31 | 73 |
regional part of nervous system | 1.76e-28 | 54 |
neural tube | 5.01e-27 | 52 |
neural rod | 5.01e-27 | 52 |
future spinal cord | 5.01e-27 | 52 |
neural keel | 5.01e-27 | 52 |
pre-chordal neural plate | 1.03e-24 | 49 |
brain | 1.89e-23 | 47 |
future brain | 1.89e-23 | 47 |
regional part of brain | 8.24e-23 | 46 |
anterior neural tube | 2.58e-21 | 40 |
structure with developmental contribution from neural crest | 4.18e-21 | 92 |
gray matter | 1.12e-20 | 34 |
regional part of forebrain | 1.83e-20 | 39 |
forebrain | 1.83e-20 | 39 |
future forebrain | 1.83e-20 | 39 |
brain grey matter | 2.11e-17 | 29 |
regional part of telencephalon | 2.11e-17 | 29 |
telencephalon | 2.11e-17 | 29 |
cerebral cortex | 3.67e-12 | 21 |
cerebral hemisphere | 3.67e-12 | 21 |
pallium | 3.67e-12 | 21 |
regional part of cerebral cortex | 7.71e-10 | 17 |
occipital lobe | 4.12e-09 | 10 |
visual cortex | 4.12e-09 | 10 |
neocortex | 4.12e-09 | 10 |