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{{CL
{{CL
|id=CL:0002610
|alt_id=
|name=raphe nuclei neuron
|namespace=cell
|def="A neuron of the raphe nuclei." [GOC:tfm]
|xref=
|is_a=CL:0000117
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T07:42:06Z
|def="A neuron of the raphe nuclei." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002610
|is_a=CL:0000117
|is_obsolete=
|located_in=
|located_in=
|name=raphe nuclei neuron
|namespace=FANTOM
|obo_creation_date=2011-03-06T07:42:06Z
|part_of=UBERON:0004684
|part_of=UBERON:0004684
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
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|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:raphe nuclei neuron
Namespace:FANTOM
Definition:"A neuron of the raphe nuclei." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:42:06Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000117(CNS neuron (sensu Vertebrata))
part_of:UBERON:0004684(raphe nuclei)



Children


derives from:FF:0000205 (mouse raphe nuclei neuron sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002610 (raphe nuclei neuron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr9:67832482..67832485,+#_745d4d03bbf96929ad5ede3a3f8e6ebcp@chr9:67832482..67832485, +
1.58e-86FFCP PHASE2:Mm9::chr9:67832482..67832485,+#_745d4d03bbf96929ad5ede3a3f8e6ebcp@chr9:67832482..67832485, +
2.21e-65FFCP PHASE1:Mm9::chr11:6372235..6372242,-#_ee5ae8b08e7340fcb149ae2c6cb4a4f9p1@ENSMUST00000175144
2.21e-65FFCP PHASE2:Mm9::chr11:6372235..6372242,-#_ee5ae8b08e7340fcb149ae2c6cb4a4f9p1@ENSMUST00000175144
3.65e-65FFCP PHASE2:Mm9::chr6:77194015..77194026,+#_28d85c1a78011c67ab425ef3f7b46494p@chr6:77194015..77194026, +
3.65e-65FFCP PHASE1:Mm9::chr6:77194015..77194026,+#_28d85c1a78011c67ab425ef3f7b46494p@chr6:77194015..77194026, +
3.28e-58FFCP PHASE1:Mm9::chr2:24918331..24918345,+#_36c47b69e467e72d6185b56953e365aep@chr2:24918331..24918345, +
3.28e-58FFCP PHASE2:Mm9::chr2:24918331..24918345,+#_36c47b69e467e72d6185b56953e365aep@chr2:24918331..24918345, +
4.9e-53FFCP PHASE1:Mm9::chr3:88548978..88548990,-#_f7c90e8fb9beda686093bdd6751ea891p@chr3:88548978..88548990, -
4.9e-53FFCP PHASE2:Mm9::chr3:88548978..88548990,-#_f7c90e8fb9beda686093bdd6751ea891p@chr3:88548978..88548990, -
7.35e-53FFCP PHASE1:Mm9::chr10:10408741..10408754,-#_23ba08c054ea8bd3b015f491f4866e3fp@chr10:10408741..10408754, -
7.35e-53FFCP PHASE2:Mm9::chr10:10408741..10408754,-#_23ba08c054ea8bd3b015f491f4866e3fp@chr10:10408741..10408754, -
1.1e-52FFCP PHASE2:Mm9::chr3:126639582..126639596,-#_7b3fdc68e4378122b173204e6d074662p@chr3:126639582..126639596, -
1.1e-52FFCP PHASE1:Mm9::chr3:126639582..126639596,-#_7b3fdc68e4378122b173204e6d074662p@chr3:126639582..126639596, -
1.65e-52FFCP PHASE2:Mm9::chr4:57254065..57254072,-#_0970218cb67e1a48c3962c242fba1124p@chr4:57254065..57254072, -
1.65e-52FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_0970218cb67e1a48c3962c242fba1124p@chr12:85023868..85023879, +
1.65e-52FFCP PHASE1:Mm9::chr4:57254065..57254072,-#_0970218cb67e1a48c3962c242fba1124p@chr4:57254065..57254072, -
1.65e-52FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_0970218cb67e1a48c3962c242fba1124p@chr12:85023868..85023879, +
2.47e-52FFCP PHASE1:Mm9::chr10:6473752..6473760,-#_5be8f08f0c8cfd6c46d538520cf2d7bfp@chr10:6473752..6473760, -
2.47e-52FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_5be8f08f0c8cfd6c46d538520cf2d7bfp@chr7:67121440..67121451, -
2.47e-52FFCP PHASE2:Mm9::chr10:6473752..6473760,-#_5be8f08f0c8cfd6c46d538520cf2d7bfp@chr10:6473752..6473760, -
2.47e-52FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_5be8f08f0c8cfd6c46d538520cf2d7bfp@chr7:67121440..67121451, -
2.47e-52FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_5be8f08f0c8cfd6c46d538520cf2d7bfp@chr1:66486342..66486351, +
2.47e-52FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_5be8f08f0c8cfd6c46d538520cf2d7bfp@chr1:66486342..66486351, +
3.69e-52FFCP PHASE2:Mm9::chr4:57253865..57253876,-#_049b610fd937cce64d31be1bacdf2e79p@chr4:57253865..57253876, -
3.69e-52FFCP PHASE2:Mm9::chr4:57253877..57253880,-#_049b610fd937cce64d31be1bacdf2e79p@chr4:57253877..57253880, -
3.69e-52FFCP PHASE1:Mm9::chr4:57253865..57253876,-#_049b610fd937cce64d31be1bacdf2e79p@chr4:57253865..57253876, -
3.69e-52FFCP PHASE1:Mm9::chr4:57253877..57253880,-#_049b610fd937cce64d31be1bacdf2e79p@chr4:57253877..57253880, -
5.51e-52FFCP PHASE2:Mm9::chr14:66893581..66893589,-#_d1008a3f66e7bee8065e865b4cb4f373p@chr14:66893581..66893589, -
5.51e-52FFCP PHASE1:Mm9::chr14:66893581..66893589,-#_d1008a3f66e7bee8065e865b4cb4f373p@chr14:66893581..66893589, -
1.18e-44FFCP PHASE2:Mm9::chr4:134073503..134073512,-#_10c306c75c626ee37f77043025bec096p@chr4:134073503..134073512, -
1.18e-44FFCP PHASE1:Mm9::chr4:134073503..134073512,-#_10c306c75c626ee37f77043025bec096p@chr4:134073503..134073512, -
1.18e-44FFCP PHASE1:Mm9::chr1:66743268..66743289,+#_10c306c75c626ee37f77043025bec096p@chr1:66743268..66743289, +
1.18e-44FFCP PHASE2:Mm9::chr1:66743268..66743289,+#_10c306c75c626ee37f77043025bec096p@chr1:66743268..66743289, +
2.33e-44FFCP PHASE1:Mm9::chr4:57447275..57447280,+#_6a662259c2f54acb8bd0d8033fa2de07p21@Palm2
2.33e-44FFCP PHASE1:Mm9::chr8:67087900..67087910,-#_6a662259c2f54acb8bd0d8033fa2de07p@chr8:67087900..67087910, -
2.33e-44FFCP PHASE2:Mm9::chr4:57447275..57447280,+#_6a662259c2f54acb8bd0d8033fa2de07p21@Palm2
2.33e-44FFCP PHASE2:Mm9::chr8:67087900..67087910,-#_6a662259c2f54acb8bd0d8033fa2de07p@chr8:67087900..67087910, -
3.27e-44FFCP PHASE1:Mm9::chr9:46721556..46721563,+#_b2a9e0a07ab4acf6525bfdf221a34b3dp5@2900052N01Rik
3.27e-44FFCP PHASE2:Mm9::chr9:46721556..46721563,+#_b2a9e0a07ab4acf6525bfdf221a34b3dp5@2900052N01Rik
3.27e-44FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_b2a9e0a07ab4acf6525bfdf221a34b3dp@chr10:111706834..111706844, +
3.27e-44FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_b2a9e0a07ab4acf6525bfdf221a34b3dp@chr10:111706834..111706844, +
4.58e-44FFCP PHASE2:Mm9::chr10:6473722..6473734,-#_35a7b39c052d2edc241986c835cf5939p@chr10:6473722..6473734, -
4.58e-44FFCP PHASE1:Mm9::chr10:6473722..6473734,-#_35a7b39c052d2edc241986c835cf5939p@chr10:6473722..6473734, -
8.97e-44FFCP PHASE2:Mm9::chr9:14438679..14438684,-#_82cf82ac089f5eeec4b9e28a26b12612p@chr9:14438679..14438684, -
8.97e-44FFCP PHASE1:Mm9::chr9:14438679..14438684,-#_82cf82ac089f5eeec4b9e28a26b12612p@chr9:14438679..14438684, -
1.75e-43FFCP PHASE2:Mm9::chr4:147732971..147732980,-#_24510cf9e8468464f14064f649d6eb59p@chr4:147732971..147732980, -
1.75e-43FFCP PHASE1:Mm9::chr4:147732971..147732980,-#_24510cf9e8468464f14064f649d6eb59p@chr4:147732971..147732980, -
2.45e-43FFCP PHASE1:Mm9::chr16:43072307..43072322,+#_c9ee5fb25cca9e5355270ef9129ceb5bp@chr16:43072307..43072322, +
2.45e-43FFCP PHASE2:Mm9::chr16:43072307..43072322,+#_c9ee5fb25cca9e5355270ef9129ceb5bp@chr16:43072307..43072322, +
1.7e-39FFCP PHASE1:Mm9::chr10:6482651..6482660,-#_f58d1fa3a0d60dd5c7019bc99ce94259p@chr10:6482651..6482660, -
1.7e-39FFCP PHASE2:Mm9::chr10:6482651..6482660,-#_f58d1fa3a0d60dd5c7019bc99ce94259p@chr10:6482651..6482660, -
2.66e-39FFCP PHASE1:Mm9::chr2:103659822..103659827,-#_c9b19df4cfdd956fc5f2b46114942b20p1@ENSMUST00000118421, p1@ENSMUST00000167989
2.66e-39FFCP PHASE2:Mm9::chr14:13448641..13448660,-#_c9b19df4cfdd956fc5f2b46114942b20p@chr14:13448641..13448660, -
2.66e-39FFCP PHASE1:Mm9::chr12:110796949..110796955,+#_c9b19df4cfdd956fc5f2b46114942b20p@chr12:110796949..110796955, +
2.66e-39FFCP PHASE1:Mm9::chr14:13448641..13448660,-#_c9b19df4cfdd956fc5f2b46114942b20p@chr14:13448641..13448660, -
2.66e-39FFCP PHASE2:Mm9::chr2:103659822..103659827,-#_c9b19df4cfdd956fc5f2b46114942b20p1@ENSMUST00000118421, p1@ENSMUST00000167989
2.66e-39FFCP PHASE2:Mm9::chr12:110796949..110796955,+#_c9b19df4cfdd956fc5f2b46114942b20p@chr12:110796949..110796955, +
4.15e-39FFCP PHASE1:Mm9::chr2:90730407..90730420,+#_4dc0cd5a7f66cf180118bd55c2d5fa9bp@chr2:90730407..90730420, +
4.15e-39FFCP PHASE2:Mm9::chr16:43072335..43072346,+#_4dc0cd5a7f66cf180118bd55c2d5fa9bp@chr16:43072335..43072346, +
4.15e-39FFCP PHASE1:Mm9::chr5:135039704..135039724,-#_4dc0cd5a7f66cf180118bd55c2d5fa9bp@chr5:135039704..135039724, -
4.15e-39FFCP PHASE1:Mm9::chr16:43072335..43072346,+#_4dc0cd5a7f66cf180118bd55c2d5fa9bp@chr16:43072335..43072346, +
4.15e-39FFCP PHASE2:Mm9::chr5:135039704..135039724,-#_4dc0cd5a7f66cf180118bd55c2d5fa9bp@chr5:135039704..135039724, -
4.15e-39FFCP PHASE2:Mm9::chr2:90730407..90730420,+#_4dc0cd5a7f66cf180118bd55c2d5fa9bp@chr2:90730407..90730420, +
4.15e-39FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_4dc0cd5a7f66cf180118bd55c2d5fa9bp19@Rgs8
4.15e-39FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_4dc0cd5a7f66cf180118bd55c2d5fa9bp19@Rgs8
1.17e-38FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_89ba0b848040a3e0d1a27ecca4a01067p@chr7:6659121..6659133, -
1.17e-38FFCP PHASE1:Mm9::chr10:77867856..77867866,-#_89ba0b848040a3e0d1a27ecca4a01067p@chr10:77867856..77867866, -
1.17e-38FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_89ba0b848040a3e0d1a27ecca4a01067p@chr7:6659121..6659133, -
1.17e-38FFCP PHASE1:Mm9::chr16:89818560..89818572,-#_89ba0b848040a3e0d1a27ecca4a01067p17@Tiam1
1.17e-38FFCP PHASE2:Mm9::chr16:89818560..89818572,-#_89ba0b848040a3e0d1a27ecca4a01067p17@Tiam1
1.17e-38FFCP PHASE2:Mm9::chr10:77867856..77867866,-#_89ba0b848040a3e0d1a27ecca4a01067p@chr10:77867856..77867866, -
2.09e-38FFCP PHASE1:Mm9::chr6:48398099..48398121,+#_e3e6dd22b8ce667f347eb8d49a6a0312p2@LOC100505089, p2@Sspo
2.09e-38FFCP PHASE2:Mm9::chr6:48398099..48398121,+#_e3e6dd22b8ce667f347eb8d49a6a0312p2@LOC100505089, p2@Sspo
8.86e-38FFCP PHASE2:Mm9::chr4:47004694..47004703,-#_e24638caa7d19d5c81fafd5c1fe23aecp8@Gabbr2
8.86e-38FFCP PHASE1:Mm9::chr4:47004694..47004703,-#_e24638caa7d19d5c81fafd5c1fe23aecp8@Gabbr2
1.18e-37FFCP PHASE1:Mm9::chr2:177853871..177853888,+#_afca7927ae4ecd4501eb1be679dc6020p18@Phactr3
1.18e-37FFCP PHASE2:Mm9::chr2:177853871..177853888,+#_afca7927ae4ecd4501eb1be679dc6020p18@Phactr3
2.1e-37FFCP PHASE2:Mm9::chr4:147588847..147588858,-#_e2eb54b7b0e4828eeedc5e89344e7632p@chr4:147588847..147588858, -
2.1e-37FFCP PHASE1:Mm9::chr4:147588847..147588858,-#_e2eb54b7b0e4828eeedc5e89344e7632p@chr4:147588847..147588858, -
3.72e-37FFCP PHASE2:Mm9::chr2:70439780..70439819,+#_d31bcdeef18125ca3b8586437916ef26p@chr2:70439780..70439819, +
3.72e-37FFCP PHASE1:Mm9::chr2:70439780..70439819,+#_d31bcdeef18125ca3b8586437916ef26p@chr2:70439780..70439819, +
3.67e-34FFCP PHASE1:Mm9::chr11:68505408..68505413,+#_48f77144d9ae96cadc84a6685db45e7ap8@Myh10
3.67e-34FFCP PHASE2:Mm9::chr11:68505408..68505413,+#_48f77144d9ae96cadc84a6685db45e7ap8@Myh10
3.67e-34FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_48f77144d9ae96cadc84a6685db45e7ap@chr19:40804786..40804795, -
3.67e-34FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_48f77144d9ae96cadc84a6685db45e7ap@chr19:40804786..40804795, -
4.74e-34FFCP PHASE1:Mm9::chr5:31441248..31441260,-#_169dec36b6da20ae17adc6e552dd1020p1@Ucn
4.74e-34FFCP PHASE2:Mm9::chr5:31441248..31441260,-#_169dec36b6da20ae17adc6e552dd1020p1@Ucn
4.74e-34FFCP PHASE2:Mm9::chr2:102621960..102621969,+#_169dec36b6da20ae17adc6e552dd1020p@chr2:102621960..102621969, +
4.74e-34FFCP PHASE1:Mm9::chr2:102621960..102621969,+#_169dec36b6da20ae17adc6e552dd1020p@chr2:102621960..102621969, +
1.31e-33FFCP PHASE1:Mm9::chr7:116903722..116903727,-#_a36545adf9d760f8747f6d6bf57d6800p@chr7:116903722..116903727, -
1.31e-33FFCP PHASE2:Mm9::chr15:59373755..59373758,-#_a36545adf9d760f8747f6d6bf57d6800p@chr15:59373755..59373758, -
1.31e-33FFCP PHASE2:Mm9::chr14:31438329..31438344,-#_a36545adf9d760f8747f6d6bf57d6800p@chr14:31438329..31438344, -
1.31e-33FFCP PHASE1:Mm9::chr15:59373755..59373758,-#_a36545adf9d760f8747f6d6bf57d6800p@chr15:59373755..59373758, -
1.31e-33FFCP PHASE1:Mm9::chr14:31438329..31438344,-#_a36545adf9d760f8747f6d6bf57d6800p@chr14:31438329..31438344, -
1.31e-33FFCP PHASE2:Mm9::chr7:116903722..116903727,-#_a36545adf9d760f8747f6d6bf57d6800p@chr7:116903722..116903727, -
2.18e-33FFCP PHASE2:Mm9::chr14:54813640..54813649,+#_2d541b7f0acd11533e86cb416ff8c589p@chr14:54813640..54813649, +
2.18e-33FFCP PHASE1:Mm9::chr14:54813640..54813649,+#_2d541b7f0acd11533e86cb416ff8c589p@chr14:54813640..54813649, +
7.68e-33FFCP PHASE2:Mm9::chr19:55969998..55970001,+#_03d672d980fa98567e158d0f834ed70bp40@Tcf7l2
7.68e-33FFCP PHASE2:Mm9::chr18:62483890..62483902,+#_03d672d980fa98567e158d0f834ed70bp3@Htr4

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