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{{CL
{{CL
|id=CL:0002599
|alt_id=
|name=smooth muscle cell of the esophagus
|namespace=cell
|def="A smooth muscle cell of the esophagus." [GOC:tfm]
|xref=
|is_a=CL:0000192
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:48:17Z
|def="A smooth muscle cell of the esophagus." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002599
|is_a=CL:0000192
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of the esophagus
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:48:17Z
|part_of=UBERON:0001043
|part_of=UBERON:0001043
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:smooth muscle cell of the esophagus
Namespace:FANTOM
Definition:"A smooth muscle cell of the esophagus." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:48:17Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0001043(esophagus)



Children


derives from:FF:0000182 (human esophageal smooth muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002599 (smooth muscle cell of the esophagus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr7:46193488..46193497,+#_fb9a2f80eaa5046cd30e3a6726108033p@chr7:46193488..46193497, +
5.42e-195FFCP PHASE1:Hg19::chr7:46193488..46193497,+#_fb9a2f80eaa5046cd30e3a6726108033p@chr7:46193488..46193497, +
2.39e-66FFCP PHASE2:Hg19::chr8:77108050..77108053,-#_101dddbe1f6b379beedaaa40f54debfcp@chr8:77108050..77108053, -
2.39e-66FFCP PHASE1:Hg19::chr8:77108050..77108053,-#_101dddbe1f6b379beedaaa40f54debfcp@chr8:77108050..77108053, -
9.91e-41FFCP PHASE2:Hg19::chr7:47622108..47622117,-#_7b8bdc9d49bba2abe471b37baaff817bp33@TNS3
9.91e-41FFCP PHASE1:Hg19::chr7:47622108..47622117,-#_7b8bdc9d49bba2abe471b37baaff817bp33@TNS3
7.48e-30FFCP PHASE1:Hg19::chr11:130298611..130298627,-#_ef51e71f35ac61edca96e814c7558b13p4@ADAMTS8
7.48e-30FFCP PHASE2:Hg19::chr11:130298611..130298627,-#_ef51e71f35ac61edca96e814c7558b13p4@ADAMTS8
1.33e-29FFCP PHASE2:Hg19::chr4:148885940..148885946,+#_9b7f31092d22a3b528854a70ca3c4b38p@chr4:148885940..148885946, +
1.33e-29FFCP PHASE1:Hg19::chr4:148885940..148885946,+#_9b7f31092d22a3b528854a70ca3c4b38p@chr4:148885940..148885946, +
1.78e-29FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_d44fe52dd7de011aa7129740b4533729p@chr10:92178805..92178827, +
1.78e-29FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_d44fe52dd7de011aa7129740b4533729p@chr10:92178805..92178827, +
9.79e-26FFCP PHASE2:Hg19::chrX:104568883..104568906,+#_9d4d013bd94cf8d6bf2c1db0398ef0d6p@chrX:104568883..104568906, +
9.79e-26FFCP PHASE1:Hg19::chrX:104568883..104568906,+#_9d4d013bd94cf8d6bf2c1db0398ef0d6p@chrX:104568883..104568906, +
3.28e-23FFCP PHASE1:Hg19::chr12:57000413..57000417,-#_f48b5d1f28d43cfc0122b3f3b0498f62p22@BAZ2A
3.28e-23FFCP PHASE2:Hg19::chr12:57000413..57000417,-#_f48b5d1f28d43cfc0122b3f3b0498f62p22@BAZ2A
1.88e-21FFCP PHASE2:Hg19::chr1:204276775..204276789,-#_e1c6247ef1d8175352af3389c144e020p@chr1:204276775..204276789, -
1.88e-21FFCP PHASE1:Hg19::chr1:204276775..204276789,-#_e1c6247ef1d8175352af3389c144e020p@chr1:204276775..204276789, -
2.3e-21FFCP PHASE2:Hg19::chr6:134210625..134210636,+#_f503c77e3a8ac26068453963c02bfb62p6@TCF21
2.3e-21FFCP PHASE1:Hg19::chr6:134210625..134210636,+#_f503c77e3a8ac26068453963c02bfb62p6@TCF21
2.82e-21FFCP PHASE2:Hg19::chr3:170150640..170150647,+#_72978ab143d86b4782e735c0ea18b359p@chr3:170150640..170150647, +
2.82e-21FFCP PHASE1:Hg19::chr3:170150640..170150647,+#_72978ab143d86b4782e735c0ea18b359p@chr3:170150640..170150647, +
6.31e-21FFCP PHASE2:Hg19::chr1:54791102..54791151,-#_0aa3f75c97f565c3f2092e98737ab1cbp6@SSBP3
6.31e-21FFCP PHASE1:Hg19::chr1:54791102..54791151,-#_0aa3f75c97f565c3f2092e98737ab1cbp6@SSBP3
1.08e-19FFCP PHASE2:Hg19::chr19:34787674..34787690,-#_cdeb8e080ecd5c45bb088d5bc9d745d5p1@ENST00000431093
1.08e-19FFCP PHASE1:Hg19::chr19:34787674..34787690,-#_cdeb8e080ecd5c45bb088d5bc9d745d5p1@ENST00000431093
1.88e-19FFCP PHASE1:Hg19::chr15:80843472..80843480,+#_7c9ff540582b3e2cffb091c29d1f51d8p22@ARNT2
1.88e-19FFCP PHASE2:Hg19::chr15:80843472..80843480,+#_7c9ff540582b3e2cffb091c29d1f51d8p22@ARNT2
7.37e-18FFCP PHASE2:Hg19::chr5:149425247..149425250,+#_be372443757229b534d6c8de621908dcp@chr5:149425247..149425250, +
7.37e-18FFCP PHASE1:Hg19::chr5:149425247..149425250,+#_be372443757229b534d6c8de621908dcp@chr5:149425247..149425250, +
1.44e-17FFCP PHASE2:Hg19::chr3:177652390..177652395,+#_e6f4b5fc7a9c7eb02ffcc141d918e605p1@ENST00000450500
1.44e-17FFCP PHASE1:Hg19::chr3:177652390..177652395,+#_e6f4b5fc7a9c7eb02ffcc141d918e605p1@ENST00000450500
6.47e-17FFCP PHASE2:Hg19::chr19:45261267..45261280,+#_fb5ced29514e79866eccf89c13aa6e3bp@chr19:45261267..45261280, +
6.47e-17FFCP PHASE1:Hg19::chr19:45261267..45261280,+#_fb5ced29514e79866eccf89c13aa6e3bp@chr19:45261267..45261280, +
7.57e-17FFCP PHASE1:Hg19::chr15:35731807..35731812,+#_1e4901bee981d413596aedcf9d16f7d2p@chr15:35731807..35731812, +
7.57e-17FFCP PHASE2:Hg19::chr15:35731807..35731812,+#_1e4901bee981d413596aedcf9d16f7d2p@chr15:35731807..35731812, +
8.86e-17FFCP PHASE2:Hg19::chr18:77557932..77557943,+#_4d9c588a4a5f871a944c673dab00b6c9p@chr18:77557932..77557943, +
8.86e-17FFCP PHASE1:Hg19::chr18:77557932..77557943,+#_4d9c588a4a5f871a944c673dab00b6c9p@chr18:77557932..77557943, +
1.41e-16FFCP PHASE1:Hg19::chr16:30367267..30367278,+#_fe1cacc5c4d54588c2c37d965fe63e53p@chr16:30367267..30367278, +
1.41e-16FFCP PHASE2:Hg19::chr16:30367267..30367278,+#_fe1cacc5c4d54588c2c37d965fe63e53p@chr16:30367267..30367278, +
9.99e-16FFCP PHASE2:Hg19::chr17:80037380..80037391,-#_bdfff332d7f65476e2e43f9ec4386facp6@BC065179
9.99e-16FFCP PHASE1:Hg19::chr17:80037380..80037391,-#_bdfff332d7f65476e2e43f9ec4386facp6@BC065179
1.54e-15FFCP PHASE2:Hg19::chr6:35688276..35688291,-#_c7b3288da405f81840040679b75224d3p@chr6:35688276..35688291, -
1.54e-15FFCP PHASE1:Hg19::chr6:35688276..35688291,-#_c7b3288da405f81840040679b75224d3p@chr6:35688276..35688291, -
1.54e-15FFCP PHASE1:Hg19::chr14:72169012..72169030,+#_c7b3288da405f81840040679b75224d3p20@SIPA1L1
1.54e-15FFCP PHASE2:Hg19::chr14:72169012..72169030,+#_c7b3288da405f81840040679b75224d3p20@SIPA1L1
2.06e-15FFCP PHASE1:Hg19::chr16:57880370..57880384,-#_638d53a60c2ec46ab2d2724b7f634692p8@KIFC3
2.06e-15FFCP PHASE2:Hg19::chr16:57880370..57880384,-#_638d53a60c2ec46ab2d2724b7f634692p8@KIFC3
7.13e-15FFCP PHASE2:Hg19::chr3:177623510..177623515,+#_f3fce2af0821784ec5bb532c336a0372p@chr3:177623510..177623515, +
7.13e-15FFCP PHASE1:Hg19::chr3:177623510..177623515,+#_f3fce2af0821784ec5bb532c336a0372p@chr3:177623510..177623515, +
4.53e-14FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_01ace2d266d4a568c291effce5c9ae5cp@chr15:80800274..80800278, -
4.53e-14FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_01ace2d266d4a568c291effce5c9ae5cp@chr15:80800274..80800278, -
7.55e-14FFCP PHASE1:Hg19::chr14:92343971..92343997,-#_fc26621f4ef509dcf86ca05bc69b50f0p@chr14:92343971..92343997, -
7.55e-14FFCP PHASE2:Hg19::chr14:92343971..92343997,-#_fc26621f4ef509dcf86ca05bc69b50f0p@chr14:92343971..92343997, -
2.62e-13FFCP PHASE1:Hg19::chr11:2950810..2950823,-#_dfc43e2ea16f57bb7d544a2fe9d61db6p4@PHLDA2
2.62e-13FFCP PHASE2:Hg19::chr11:2950810..2950823,-#_dfc43e2ea16f57bb7d544a2fe9d61db6p4@PHLDA2
9.92e-13FFCP PHASE2:Hg19::chr1:9970373..9970382,-#_3ee9b04bb530f6906e3f42a44b81985ep5@CTNNBIP1
9.92e-13FFCP PHASE1:Hg19::chr1:9970373..9970382,-#_3ee9b04bb530f6906e3f42a44b81985ep5@CTNNBIP1
1.4e-12FFCP PHASE2:Hg19::chr1:26907862..26907865,-#_2a29ddc373ed4b85c0b05ba40fb626c9p@chr1:26907862..26907865, -
1.4e-12FFCP PHASE1:Hg19::chr1:26907862..26907865,-#_2a29ddc373ed4b85c0b05ba40fb626c9p@chr1:26907862..26907865, -
5.05e-12FFCP PHASE2:Hg19::chr9:130829492..130829503,-#_d31ce0a9c407ee336774ee8f63a3d7fdp4@NAIF1
5.05e-12FFCP PHASE1:Hg19::chr9:130829492..130829503,-#_d31ce0a9c407ee336774ee8f63a3d7fdp4@NAIF1
7.76e-12FFCP PHASE2:Hg19::chr16:86612174..86612188,+#_b9f1b7e9bf228004a40dab2ad824020dp4@FOXL1
7.76e-12FFCP PHASE1:Hg19::chr16:86612174..86612188,+#_b9f1b7e9bf228004a40dab2ad824020dp4@FOXL1
8.64e-12FFCP PHASE2:Hg19::chr7:3234429..3234449,-#_de1cf05dded1d21924695c567b87a72ap@chr7:3234429..3234449, -
8.64e-12FFCP PHASE1:Hg19::chr7:3234429..3234449,-#_de1cf05dded1d21924695c567b87a72ap@chr7:3234429..3234449, -
1.07e-11FFCP PHASE2:Hg19::chr17:26890664..26890683,-#_550c6b67bffacf08aa9881e361d287c0p6@PIGS
1.07e-11FFCP PHASE1:Hg19::chr17:26890664..26890683,-#_550c6b67bffacf08aa9881e361d287c0p6@PIGS
1.31e-11FFCP PHASE1:Hg19::chr17:29335535..29335575,-#_22288cd79015607d1c1a42600d984517p@chr17:29335535..29335575, -
1.31e-11FFCP PHASE2:Hg19::chr17:29335535..29335575,-#_22288cd79015607d1c1a42600d984517p@chr17:29335535..29335575, -
2.18e-11FFCP PHASE1:Hg19::chr16:28841378..28841383,+#_34b7846990d3620ea17a5e5b759dd739p@chr16:28841378..28841383, +
2.18e-11FFCP PHASE2:Hg19::chr16:28841378..28841383,+#_34b7846990d3620ea17a5e5b759dd739p@chr16:28841378..28841383, +
2.79e-11FFCP PHASE1:Hg19::chr11:130298500..130298509,-#_60aa24946ee0556691743b7317402b28p1@ADAMTS8
2.79e-11FFCP PHASE2:Hg19::chr11:130298500..130298509,-#_60aa24946ee0556691743b7317402b28p1@ADAMTS8
2.96e-11FFCP PHASE2:Hg19::chr21:47539028..47539037,+#_5b1a091f2d3332c8e7ad87c30ae1d2a9p@chr21:47539028..47539037, +
2.96e-11FFCP PHASE1:Hg19::chr21:47539028..47539037,+#_5b1a091f2d3332c8e7ad87c30ae1d2a9p@chr21:47539028..47539037, +
6.14e-11FFCP PHASE2:Hg19::chr1:10477039..10477066,+#_53710c2ad1067680675241a92960b9c3p@chr1:10477039..10477066, +
6.14e-11FFCP PHASE1:Hg19::chr1:10477039..10477066,+#_53710c2ad1067680675241a92960b9c3p@chr1:10477039..10477066, +
6.14e-11FFCP PHASE2:Hg19::chr17:67757945..67757967,-#_53710c2ad1067680675241a92960b9c3p@chr17:67757945..67757967, -
6.14e-11FFCP PHASE1:Hg19::chr17:67757945..67757967,-#_53710c2ad1067680675241a92960b9c3p@chr17:67757945..67757967, -
1.19e-10FFCP PHASE2:Hg19::chr1:1567487..1567492,+#_f6dd4b12ef6edc6335432da84161a0b5p6@MMP23B
1.19e-10FFCP PHASE1:Hg19::chr1:1567487..1567492,+#_f6dd4b12ef6edc6335432da84161a0b5p6@MMP23B
1.43e-10FFCP PHASE1:Hg19::chr13:114630408..114630430,+#_eaeaeb50e9018efae538ad307de5daddp@chr13:114630408..114630430, +
1.43e-10FFCP PHASE2:Hg19::chr13:114630408..114630430,+#_eaeaeb50e9018efae538ad307de5daddp@chr13:114630408..114630430, +
2.28e-10FFCP PHASE2:Hg19::chr4:42399551..42399563,+#_84523537e1db99ded43f0c526d7d7778p2@SHISA3
2.28e-10FFCP PHASE1:Hg19::chr4:42399551..42399563,+#_84523537e1db99ded43f0c526d7d7778p2@SHISA3
2.84e-10FFCP PHASE2:Hg19::chr18:77557973..77557984,+#_8313b15291bf6abde1ac9aa6db24f922p@chr18:77557973..77557984, +
2.84e-10FFCP PHASE1:Hg19::chr18:77557973..77557984,+#_8313b15291bf6abde1ac9aa6db24f922p@chr18:77557973..77557984, +
3.01e-10FFCP PHASE2:Hg19::chr19:5212096..5212107,-#_5bb404ac398bd8f3d91ed1784d14204cp@chr19:5212096..5212107, -
3.01e-10FFCP PHASE1:Hg19::chr19:5212096..5212107,-#_5bb404ac398bd8f3d91ed1784d14204cp@chr19:5212096..5212107, -
3.71e-10FFCP PHASE1:Hg19::chr11:47279167..47279178,+#_742073819e2e4e2cbe055374fac80d22p10@NR1H3
3.71e-10FFCP PHASE2:Hg19::chr11:47279167..47279178,+#_742073819e2e4e2cbe055374fac80d22p10@NR1H3
5.79e-10FFCP PHASE2:Hg19::chr5:149682252..149682265,-#_9533f4a2f0f98e33acef76824da9c501p6@ARSI
5.79e-10FFCP PHASE1:Hg19::chr5:149682252..149682265,-#_9533f4a2f0f98e33acef76824da9c501p6@ARSI
6.33e-10FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_4a73d32d5dc486376c7f1ab9e2654c99p4@STAR
6.33e-10FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_4a73d32d5dc486376c7f1ab9e2654c99p4@STAR
7.55e-10FFCP PHASE1:Hg19::chr22:25091967..25092006,-#_3aa6ffca6fbfd5cdd389af260d7100b2p@chr22:25091967..25092006, -
7.55e-10FFCP PHASE2:Hg19::chr22:25091967..25092006,-#_3aa6ffca6fbfd5cdd389af260d7100b2p@chr22:25091967..25092006, -
7.98e-10FFCP PHASE1:Hg19::chr14:92414271..92414293,-#_80d79100add6090602bb114d900f2f7ap21@FBLN5
7.98e-10FFCP PHASE2:Hg19::chr14:92414271..92414293,-#_80d79100add6090602bb114d900f2f7ap21@FBLN5

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