FFCP PHASE1:Mm9::chr7:133415958..133415969,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=104175 | |EntrezGene=104175 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q8QZX0 | |UniProt=Q8QZX0 | ||
|association_with_transcript=-163bp_to_ENSMUST00000056028,NM_145587,uc009jqw.1_5end | |association_with_transcript=-163bp_to_ENSMUST00000056028,NM_145587,uc009jqw.1_5end | ||
|cluster_id=chr7:133415958..133415969,+ | |||
|description=CAGE_peak_6_at_Sbk1_5end | |description=CAGE_peak_6_at_Sbk1_5end | ||
|id=chr7:133415958..133415969,+ | |id=chr7:133415958..133415969,+ | ||
|ontology_enrichment_celltype=CL:0000117!7.66e-14!23;CL:0000337!7.66e-14!23;CL:0000540!3.85e-13!33;CL:0000047!3.85e-13!33;CL:0000031!3.85e-13!33;CL:0000404!3.85e-13!33;CL:0000221!2.70e-10!44;CL:0000133!2.70e-10!44;CL:0002319!2.75e-10!43;CL:0000393!3.87e-09!39;CL:0000211!3.87e-09!39;CL:0000055!6.77e-07!50 | |ontology_enrichment_celltype=CL:0000117!7.66e-14!23;CL:0000337!7.66e-14!23;CL:0000540!3.85e-13!33;CL:0000047!3.85e-13!33;CL:0000031!3.85e-13!33;CL:0000404!3.85e-13!33;CL:0000221!2.70e-10!44;CL:0000133!2.70e-10!44;CL:0002319!2.75e-10!43;CL:0000393!3.87e-09!39;CL:0000211!3.87e-09!39;CL:0000055!6.77e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.15e-18,23;CL:0000337,1.15e-18,23;CL:0000540,3.42e-15,33;CL:0000047,3.42e-15,33;CL:0000031,3.42e-15,33;CL:0000404,3.42e-15,33;CL:0002319,2.12e-11,43;CL:0000393,3.27e-11,39;CL:0000211,3.27e-11,39;CL:0000221,6.82e-11,44;CL:0000133,6.82e-11,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.20e-17!73;UBERON:0005743!9.20e-17!73;UBERON:0000073!3.93e-16!75;UBERON:0001016!3.93e-16!75;UBERON:0002346!4.28e-16!71;UBERON:0003075!4.28e-16!71;UBERON:0007284!4.28e-16!71;UBERON:0004121!1.09e-15!102;UBERON:0000924!1.09e-15!102;UBERON:0006601!1.09e-15!102;UBERON:0000033!1.27e-13!63;UBERON:0001049!5.34e-13!52;UBERON:0005068!5.34e-13!52;UBERON:0006241!5.34e-13!52;UBERON:0007135!5.34e-13!52;UBERON:0003056!9.91e-13!49;UBERON:0002020!7.74e-12!34;UBERON:0000955!2.59e-11!50;UBERON:0006238!2.59e-11!50;UBERON:0002616!5.02e-11!49;UBERON:0002780!2.98e-09!39;UBERON:0001890!2.98e-09!39;UBERON:0006240!2.98e-09!39;UBERON:0003080!3.42e-09!40;UBERON:0002791!6.72e-09!29;UBERON:0003528!6.72e-09!29;UBERON:0001893!6.72e-09!29;UBERON:0000153!2.11e-08!94;UBERON:0007811!7.89e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.51e-20,64;UBERON:0003075,3.51e-20,64;UBERON:0007284,3.51e-20,64;UBERON:0001017,2.24e-19,73;UBERON:0001016,2.44e-18,75;UBERON:0004121,8.97e-18,95;UBERON:0000924,8.97e-18,95;UBERON:0006601,8.97e-18,95;UBERON:0000073,6.59e-17,54;UBERON:0002020,9.79e-16,34;UBERON:0001049,1.04e-15,52;UBERON:0005068,1.04e-15,52;UBERON:0006241,1.04e-15,52;UBERON:0007135,1.04e-15,52;UBERON:0003056,1.82e-15,49;UBERON:0010371,1.82e-15,73;UBERON:0000955,4.22e-12,47;UBERON:0006238,4.22e-12,47;UBERON:0002780,8.09e-12,39;UBERON:0001890,8.09e-12,39;UBERON:0006240,8.09e-12,39;UBERON:0002616,1.01e-11,46;UBERON:0003528,1.17e-11,29;UBERON:0002791,1.17e-11,29;UBERON:0001893,1.17e-11,29;UBERON:0010314,1.65e-11,92;UBERON:0003080,2.93e-11,40;UBERON:0000956,4.77e-07,21;UBERON:0001869,4.77e-07,21;UBERON:0000203,4.77e-07,21 | |||
|phase1_expression=0.640595388419176,0,0,0.90739263392049,0.500895729946347,0,0,0.516493293766305,0.140788722151667,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,1.26184866143295,0.411343300817216,0.84877930359606,0.850432901510698,0.397163804803541,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0.251793635951155,0,0,0,0.872100625521786,0.439372365468944,0.388859798148567,0.279972843250725,0,0.838913030288682,0,0.672187598284928,0.257259436035947,0.573066879877513,0,8.09265843438391,7.40587370980846,9.50747105259269,0.677689064138264,0,0,1.97773272513395,0.7104801149461,2.09720077362883,3.07374644257244,4.35496371695606,7.1553147315796,6.30974884054146,5.99867067247988,5.52171352379034,4.65465037016825,5.75072826109418,8.27296907949019,1.10115880999389,1.78762273319263,1.99688493233117,9.89147157976454,11.2529801630964,8.85552729946492,2.51264699101243,1.12552522006336,1.06958773443767,8.2496003932627,5.97961059356232,8.57437450796383,0.454357159999104,0.302286240427142,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,0.845060518660083,0,0,0,0,0,0,0.34255163915718,1.03575153458869,0.445326417194474,0.520455980298408,0.608930956624282,0.461230994512117,0.60289056221049,1.05829836422134,1.13099932196708,0,0.722996784599558,0.884610551949874,0.323533699894818,0.662524555381181,0.969750506270444,0,10.2473278954042,12.9856958224342,0,0.11981512450592,0,0,0.748953197024114,1.37250180845588,6.65968066198181,1.56441888173049,1.79000820131231,1.0389402227978,1.62241263067758,1.52759045775474,0.373220911830279,0.252722758433675,0.841767423545896,1.95180664444056,1.60931473103431,1.80062129805349,1.80845781402858,3.46986145671772,3.07472928683639,3.09215691047105,1.55222022443409,1.07783996466421,1.13463648100692,1.23165786914764,0.43839146485515,0.278047249225598,1.0447564995665,0.823128545631774,1.59227413454795,0,0,0.284163499395593,1.03562886267751,0.703578179943289,1.2604344302271,0.946978942340841,0.787056926989615,1.07986979021165,0.930135779001631,0.804820204198858,0.350296027101508,0.658239399653922,0.32833492815819,0.0810688095458557,0.438599962275997,0.439100230582101,0.402619256281115,1.26173969138476,7.20332286654991,0,0.528901133327089,1.06644125267617,0.696710015581316,0.644337306610467,0.605050573870028,0,0.570676878337677,0,0.658795818896044,0.502670417600539,0.397912944082302,0,0.898819408654221,0.216138049874694,0.199141273254367,1.13800740571849,0.571242563048644,1.1270773567308,0.203651327845314,0.581857461502877,1.26244475802573,0.569128834118316,0.885660887877613,0.156998727841375,0.370191491765402,0,0,0,0,0,0,0,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0.538192240565737,0,0.184753190166605,1.51593129416388,0.814824882210129,0.848725428875941,0.234690248288502,0.335012514883631,0.714130922658041,0.780534591431195,1.10344600874334,0.8858587585951,0.478364305972461,0.491589944147214,1.20879487306127,0.578596234326046,0,0,0,0.275936746304732,0.80275294993896,1.64096361229084,0.327869890753351,0.757412781613119,0.315508219416257,1.17131623288992,1.07711698866399,0.716906393857656,0.668396022247182,0.849229592366497,1.21443210502468,1.75353514746787,1.18586333383957,1.28528526568723,0,1.78065603667255,2.76907830901079,0.824850614862677,0,0.728341908464944,0.604647113929502,0.565815239267694,1.47650946440386,1.22974059177571,0.258428293168221,0.363533729477506,0.712994756769443,0,0,1.03135543248187,0,1.44048875225048,1.94038025674132,0.857348140126369,1.59606210278046,1.78368817602071,0.329098041204242,0.304464949114599,0,0,0,0.49465875882444,0.161464426695906,0.301564624640779,0.835606408021955,0.328281799490123,0.291480836629851,1.11255181206306,0.683483523191411,1.23832120777933,1.11116716421827,0,0.27338845544205,0,0.169978429993855,0.279902904647316,0.138199973804424,0,1.42351197111511,0,0.540026704109006,0.836353184057875,0.436725127492355,0.539457385539283,0.247960367176008,0,0.129614973291793,0,0,1.79419855252775,0.827292452285488,1.16670713006429,2.0665571756437,1.520605129417,1.05621514781179,1.17183946359555,0.734015410979976,0,0.288030006257865,0.316011120628178,0.608175645870493,0.410843828659309,0.25984164595559,0.716106782669926,0.596044064343795,0.480781798079875,0.295379054349154,0.504832249740738,0.838274873204998,0.806609481094724,0.487289403698762,0.865906574762965,1.16876902181569,0.226730383615211,0,0,0.335769232728157,0,0.187682475451182,0.549454872801795,0.214368379079066,0,0,1.38097570952153,1.71868654031819,0.859265911718438,1.37016503954128,2.2661816921691,1.35004500046361,2.70192721934532,0,1.03552062350364,3.21740777510948,2.39414924040619,2.21953687480374,1.21553358534147,3.98265008993166,1.83843508450014,0.888986911206461,1.85431551515005,2.56735367673452,1.01078884705519,1.01391719956096,1.13175804831646,1.03005658216871,1.08842759088278,1.49332219284595,1.42888107384922,1.27472758539341,1.73618298417335,2.06042950401653,1.61918812147837,0.685738504770831,1.06485483695602,0.715308569841963,1.0174249164263,1.12931256498397,1.69229215783353,0.182927972872773,0.789209134313529,1.22223702461276,0.561142271657738,1.77952527186261,1.18205378850676,2.04615521584845,1.85924209423159,1.73615949883027,2.99772693525535,1.40358965067245,0.859484216193193,0.956441660344217,0.882365676478062,0 | |phase1_expression=0.640595388419176,0,0,0.90739263392049,0.500895729946347,0,0,0.516493293766305,0.140788722151667,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,1.26184866143295,0.411343300817216,0.84877930359606,0.850432901510698,0.397163804803541,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0.251793635951155,0,0,0,0.872100625521786,0.439372365468944,0.388859798148567,0.279972843250725,0,0.838913030288682,0,0.672187598284928,0.257259436035947,0.573066879877513,0,8.09265843438391,7.40587370980846,9.50747105259269,0.677689064138264,0,0,1.97773272513395,0.7104801149461,2.09720077362883,3.07374644257244,4.35496371695606,7.1553147315796,6.30974884054146,5.99867067247988,5.52171352379034,4.65465037016825,5.75072826109418,8.27296907949019,1.10115880999389,1.78762273319263,1.99688493233117,9.89147157976454,11.2529801630964,8.85552729946492,2.51264699101243,1.12552522006336,1.06958773443767,8.2496003932627,5.97961059356232,8.57437450796383,0.454357159999104,0.302286240427142,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,0.845060518660083,0,0,0,0,0,0,0.34255163915718,1.03575153458869,0.445326417194474,0.520455980298408,0.608930956624282,0.461230994512117,0.60289056221049,1.05829836422134,1.13099932196708,0,0.722996784599558,0.884610551949874,0.323533699894818,0.662524555381181,0.969750506270444,0,10.2473278954042,12.9856958224342,0,0.11981512450592,0,0,0.748953197024114,1.37250180845588,6.65968066198181,1.56441888173049,1.79000820131231,1.0389402227978,1.62241263067758,1.52759045775474,0.373220911830279,0.252722758433675,0.841767423545896,1.95180664444056,1.60931473103431,1.80062129805349,1.80845781402858,3.46986145671772,3.07472928683639,3.09215691047105,1.55222022443409,1.07783996466421,1.13463648100692,1.23165786914764,0.43839146485515,0.278047249225598,1.0447564995665,0.823128545631774,1.59227413454795,0,0,0.284163499395593,1.03562886267751,0.703578179943289,1.2604344302271,0.946978942340841,0.787056926989615,1.07986979021165,0.930135779001631,0.804820204198858,0.350296027101508,0.658239399653922,0.32833492815819,0.0810688095458557,0.438599962275997,0.439100230582101,0.402619256281115,1.26173969138476,7.20332286654991,0,0.528901133327089,1.06644125267617,0.696710015581316,0.644337306610467,0.605050573870028,0,0.570676878337677,0,0.658795818896044,0.502670417600539,0.397912944082302,0,0.898819408654221,0.216138049874694,0.199141273254367,1.13800740571849,0.571242563048644,1.1270773567308,0.203651327845314,0.581857461502877,1.26244475802573,0.569128834118316,0.885660887877613,0.156998727841375,0.370191491765402,0,0,0,0,0,0,0,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0.538192240565737,0,0.184753190166605,1.51593129416388,0.814824882210129,0.848725428875941,0.234690248288502,0.335012514883631,0.714130922658041,0.780534591431195,1.10344600874334,0.8858587585951,0.478364305972461,0.491589944147214,1.20879487306127,0.578596234326046,0,0,0,0.275936746304732,0.80275294993896,1.64096361229084,0.327869890753351,0.757412781613119,0.315508219416257,1.17131623288992,1.07711698866399,0.716906393857656,0.668396022247182,0.849229592366497,1.21443210502468,1.75353514746787,1.18586333383957,1.28528526568723,0,1.78065603667255,2.76907830901079,0.824850614862677,0,0.728341908464944,0.604647113929502,0.565815239267694,1.47650946440386,1.22974059177571,0.258428293168221,0.363533729477506,0.712994756769443,0,0,1.03135543248187,0,1.44048875225048,1.94038025674132,0.857348140126369,1.59606210278046,1.78368817602071,0.329098041204242,0.304464949114599,0,0,0,0.49465875882444,0.161464426695906,0.301564624640779,0.835606408021955,0.328281799490123,0.291480836629851,1.11255181206306,0.683483523191411,1.23832120777933,1.11116716421827,0,0.27338845544205,0,0.169978429993855,0.279902904647316,0.138199973804424,0,1.42351197111511,0,0.540026704109006,0.836353184057875,0.436725127492355,0.539457385539283,0.247960367176008,0,0.129614973291793,0,0,1.79419855252775,0.827292452285488,1.16670713006429,2.0665571756437,1.520605129417,1.05621514781179,1.17183946359555,0.734015410979976,0,0.288030006257865,0.316011120628178,0.608175645870493,0.410843828659309,0.25984164595559,0.716106782669926,0.596044064343795,0.480781798079875,0.295379054349154,0.504832249740738,0.838274873204998,0.806609481094724,0.487289403698762,0.865906574762965,1.16876902181569,0.226730383615211,0,0,0.335769232728157,0,0.187682475451182,0.549454872801795,0.214368379079066,0,0,1.38097570952153,1.71868654031819,0.859265911718438,1.37016503954128,2.2661816921691,1.35004500046361,2.70192721934532,0,1.03552062350364,3.21740777510948,2.39414924040619,2.21953687480374,1.21553358534147,3.98265008993166,1.83843508450014,0.888986911206461,1.85431551515005,2.56735367673452,1.01078884705519,1.01391719956096,1.13175804831646,1.03005658216871,1.08842759088278,1.49332219284595,1.42888107384922,1.27472758539341,1.73618298417335,2.06042950401653,1.61918812147837,0.685738504770831,1.06485483695602,0.715308569841963,1.0174249164263,1.12931256498397,1.69229215783353,0.182927972872773,0.789209134313529,1.22223702461276,0.561142271657738,1.77952527186261,1.18205378850676,2.04615521584845,1.85924209423159,1.73615949883027,2.99772693525535,1.40358965067245,0.859484216193193,0.956441660344217,0.882365676478062,0 | ||
|short_description=p6@Sbk1 | |short_description=p6@Sbk1 | ||
}} | }} |
Latest revision as of 20:40, 25 September 2015
Short description: | p6@Sbk1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Sbk1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -163bp_to_ENSMUST00000056028, NM_145587, uc009jqw.1_5end |
EntrezGene: | Sbk1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.15e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.15e-18 | 23 |
neuron | 3.42e-15 | 33 |
neuronal stem cell | 3.42e-15 | 33 |
neuroblast | 3.42e-15 | 33 |
electrically signaling cell | 3.42e-15 | 33 |
neural cell | 2.12e-11 | 43 |
electrically responsive cell | 3.27e-11 | 39 |
electrically active cell | 3.27e-11 | 39 |
ectodermal cell | 6.82e-11 | 44 |
neurectodermal cell | 6.82e-11 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.51e-20 | 64 |
neural plate | 3.51e-20 | 64 |
presumptive neural plate | 3.51e-20 | 64 |
central nervous system | 2.24e-19 | 73 |
nervous system | 2.44e-18 | 75 |
ectoderm-derived structure | 8.97e-18 | 95 |
ectoderm | 8.97e-18 | 95 |
presumptive ectoderm | 8.97e-18 | 95 |
regional part of nervous system | 6.59e-17 | 54 |
gray matter | 9.79e-16 | 34 |
neural tube | 1.04e-15 | 52 |
neural rod | 1.04e-15 | 52 |
future spinal cord | 1.04e-15 | 52 |
neural keel | 1.04e-15 | 52 |
pre-chordal neural plate | 1.82e-15 | 49 |
ecto-epithelium | 1.82e-15 | 73 |
brain | 4.22e-12 | 47 |
future brain | 4.22e-12 | 47 |
regional part of forebrain | 8.09e-12 | 39 |
forebrain | 8.09e-12 | 39 |
future forebrain | 8.09e-12 | 39 |
regional part of brain | 1.01e-11 | 46 |
brain grey matter | 1.17e-11 | 29 |
regional part of telencephalon | 1.17e-11 | 29 |
telencephalon | 1.17e-11 | 29 |
structure with developmental contribution from neural crest | 1.65e-11 | 92 |
anterior neural tube | 2.93e-11 | 40 |
cerebral cortex | 4.77e-07 | 21 |
cerebral hemisphere | 4.77e-07 | 21 |
pallium | 4.77e-07 | 21 |