Personal tools

CL:0002548: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0002548 |name=cardiac fibroblast |namespace=cell |def="A fibroblast that is part of the heart." [GOC:tfm] |xref= |is_a=CL:0000057;;CL:0002494 |synonym= |co...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002548
|alt_id=
|name=cardiac fibroblast
|namespace=cell
|def="A fibroblast that is part of the heart." [GOC:tfm]
|xref=
|is_a=CL:0000057;;CL:0002494
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T04:57:44Z
|def="A fibroblast that is part of the heart." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002548
|is_a=CL:0000057 ;;CL:0002494
|is_obsolete=
|located_in=
|located_in=
|name=cardiac fibroblast
|namespace=FANTOM
|obo_creation_date=2011-02-28T04:57:44Z
|part_of=UBERON:0000948
|part_of=UBERON:0000948
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:cardiac fibroblast
Namespace:FANTOM
Definition:"A fibroblast that is part of the heart." [GOC:tfm]
Created by:tmeehan
Creation date:2011-02-28T04:57:44Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000057(fibroblast),CL:0002494(cardiocyte)
part_of:UBERON:0000948(heart)



Children


derives from:FF:0000059 (human cardiac fibroblast sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002548 (cardiac fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-66FFCP PHASE1:Hg19::chr4:105808128..105808134,-#_515bb19c8207030b51d4804433c3c1d7p1@ENST00000474399
2.83e-66FFCP PHASE2:Hg19::chr4:105808128..105808134,-#_515bb19c8207030b51d4804433c3c1d7p1@ENST00000474399
1.52e-44FFCP PHASE1:Hg19::chr3:111579496..111579506,+#_105f5847d863e5ff3a855ec5417fcfecp@chr3:111579496..111579506, +
1.52e-44FFCP PHASE2:Hg19::chr3:111579496..111579506,+#_105f5847d863e5ff3a855ec5417fcfecp@chr3:111579496..111579506, +
9.96e-43FFCP PHASE2:Hg19::chr2:102758335..102758346,+#_958075c667c946245f2d2b4db6690f67p30@IL1R1
9.96e-43FFCP PHASE1:Hg19::chr2:102758335..102758346,+#_958075c667c946245f2d2b4db6690f67p30@IL1R1
4.27e-34FFCP PHASE2:Hg19::chr7:35293740..35293741,-#_05e7f969a52532a515933b1a78de51acp4@TBX20
4.27e-34FFCP PHASE1:Hg19::chr7:35293740..35293741,-#_05e7f969a52532a515933b1a78de51acp4@TBX20
1.64e-33FFCP PHASE2:Hg19::chr14:61929948..61929975,+#_419bb88a41a665ba76268bb1f3f48445p20@PRKCH
1.64e-33FFCP PHASE1:Hg19::chr14:61929948..61929975,+#_419bb88a41a665ba76268bb1f3f48445p20@PRKCH
2.42e-29FFCP PHASE1:Hg19::chr11:123340107..123340127,+#_16a2a48ad4d7b90d16f5ec002e1eafc8p@chr11:123340107..123340127, +
2.42e-29FFCP PHASE2:Hg19::chr11:123340107..123340127,+#_16a2a48ad4d7b90d16f5ec002e1eafc8p@chr11:123340107..123340127, +
1.12e-27FFCP PHASE2:Hg19::chr18:10979606..10979617,-#_0b442de69cb3cebfb2099fc49a746811p@chr18:10979606..10979617, -
1.12e-27FFCP PHASE1:Hg19::chr18:10979606..10979617,-#_0b442de69cb3cebfb2099fc49a746811p@chr18:10979606..10979617, -
1.61e-27FFCP PHASE1:Hg19::chr9:13707925..13707941,+#_51d9c9ef2ee055bf696e973813521c5bp@chr9:13707925..13707941, +
1.61e-27FFCP PHASE2:Hg19::chr9:13707925..13707941,+#_51d9c9ef2ee055bf696e973813521c5bp@chr9:13707925..13707941, +
4.06e-27FFCP PHASE1:Hg19::chr5:82937248..82937251,-#_6658cbf93eb64cc05a4ffb6b0e11509fp9@HAPLN1
4.06e-27FFCP PHASE2:Hg19::chr5:82937248..82937251,-#_6658cbf93eb64cc05a4ffb6b0e11509fp9@HAPLN1
1.97e-25FFCP PHASE2:Hg19::chr2:169938264..169938276,+#_2b453e9e9f485e99d931f95630c7b8b3p9@DHRS9
1.97e-25FFCP PHASE1:Hg19::chr2:169938264..169938276,+#_2b453e9e9f485e99d931f95630c7b8b3p9@DHRS9
2.75e-25FFCP PHASE2:Hg19::chr12:105258734..105258750,+#_6676aa19a1bb58dad355c0ffaa51e8a8p@chr12:105258734..105258750, +
2.75e-25FFCP PHASE1:Hg19::chr12:105258734..105258750,+#_6676aa19a1bb58dad355c0ffaa51e8a8p@chr12:105258734..105258750, +
6.06e-25FFCP PHASE1:Hg19::chr2:102720900..102720911,+#_5f4ff02560f1f34dff60782013f200fdp20@IL1R1
6.06e-25FFCP PHASE2:Hg19::chr2:102720900..102720911,+#_5f4ff02560f1f34dff60782013f200fdp20@IL1R1
7.0e-25FFCP PHASE2:Hg19::chr1:198189921..198189940,+#_6e343aedb658dfed65e910bb7021b48cp7@NEK7
7.0e-25FFCP PHASE1:Hg19::chr1:198189921..198189940,+#_6e343aedb658dfed65e910bb7021b48cp7@NEK7
1.02e-23FFCP PHASE1:Hg19::chr2:169938317..169938331,+#_afb75ad7679bce98db44e42597cbbe21p3@DHRS9
1.02e-23FFCP PHASE2:Hg19::chr2:169938317..169938331,+#_afb75ad7679bce98db44e42597cbbe21p3@DHRS9
1.57e-23FFCP PHASE2:Hg19::chr1:218518942..218518953,+#_02523a1f05e6631fbddf5c18ec775e20p28@TGFB2
1.57e-23FFCP PHASE1:Hg19::chr1:218518942..218518953,+#_02523a1f05e6631fbddf5c18ec775e20p28@TGFB2
8.91e-21FFCP PHASE2:Hg19::chr7:81146338..81146341,-#_71ed1c75d6f3e1a7e20f3a2ff221567fp@chr7:81146338..81146341, -
8.91e-21FFCP PHASE1:Hg19::chr7:81146338..81146341,-#_71ed1c75d6f3e1a7e20f3a2ff221567fp@chr7:81146338..81146341, -
2.01e-20FFCP PHASE2:Hg19::chr7:124633086..124633101,+#_5242ca50a8016854c2cdf6806a6c0c88p2@ENST00000415715
2.01e-20FFCP PHASE1:Hg19::chr7:124633086..124633101,+#_5242ca50a8016854c2cdf6806a6c0c88p2@ENST00000415715
8.63e-20FFCP PHASE1:Hg19::chr5:172659847..172659850,-#_ad001ff34db062a35c3cbe59b207a3b6p@chr5:172659847..172659850, -
8.63e-20FFCP PHASE2:Hg19::chr5:172659847..172659850,-#_ad001ff34db062a35c3cbe59b207a3b6p@chr5:172659847..172659850, -
9.49e-20FFCP PHASE1:Hg19::chr3:194131023..194131024,-#_6a6c2fe6c9fac19088ef0b5b07dc2e30p@chr3:194131023..194131024, -
9.49e-20FFCP PHASE2:Hg19::chr3:194131023..194131024,-#_6a6c2fe6c9fac19088ef0b5b07dc2e30p@chr3:194131023..194131024, -
1.04e-19FFCP PHASE2:Hg19::chr14:24740459..24740462,+#_ed917bebd839d689eee4d8e362442a66p3@AB593166
1.04e-19FFCP PHASE1:Hg19::chr14:24740459..24740462,+#_ed917bebd839d689eee4d8e362442a66p3@AB593166
1.26e-19FFCP PHASE2:Hg19::chr15:80841630..80841633,-#_30b55ec7fd086b773a580730c9ed2031p@chr15:80841630..80841633, -
1.26e-19FFCP PHASE1:Hg19::chr15:80841630..80841633,-#_30b55ec7fd086b773a580730c9ed2031p@chr15:80841630..80841633, -
5.26e-19FFCP PHASE2:Hg19::chr20:30347712..30347751,+#_9ec00b1c76e581c1cf0d8765c498fb25p5@TPX2
5.26e-19FFCP PHASE1:Hg19::chr20:30347712..30347751,+#_9ec00b1c76e581c1cf0d8765c498fb25p5@TPX2
1.24e-18FFCP PHASE2:Hg19::chr11:103673881..103673894,-#_42f12a54fb34cf57dff254ad5f18979bp@chr11:103673881..103673894, -
1.24e-18FFCP PHASE1:Hg19::chr11:103673881..103673894,-#_42f12a54fb34cf57dff254ad5f18979bp@chr11:103673881..103673894, -
9.07e-18FFCP PHASE2:Hg19::chr8:8244121..8244132,-#_2017202f3d510cc0a226a9fe2c2c5c3ep9@SGK223
9.07e-18FFCP PHASE2:Hg19::chr4:67292646..67292650,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr4:67292646..67292650, -
9.07e-18FFCP PHASE1:Hg19::chr13:106251902..106251908,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr13:106251902..106251908, -
9.07e-18FFCP PHASE1:Hg19::chr8:8244121..8244132,-#_2017202f3d510cc0a226a9fe2c2c5c3ep9@SGK223
9.07e-18FFCP PHASE1:Hg19::chrX:47895608..47895616,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chrX:47895608..47895616, +
9.07e-18FFCP PHASE2:Hg19::chr19:47363167..47363169,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr19:47363167..47363169, -
9.07e-18FFCP PHASE1:Hg19::chr3:111480481..111480482,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr3:111480481..111480482, +
9.07e-18FFCP PHASE2:Hg19::chrX:47895608..47895616,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chrX:47895608..47895616, +
9.07e-18FFCP PHASE2:Hg19::chr3:111480481..111480482,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr3:111480481..111480482, +
9.07e-18FFCP PHASE2:Hg19::chr1:208252658..208252675,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr1:208252658..208252675, -
9.07e-18FFCP PHASE1:Hg19::chr19:47363167..47363169,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr19:47363167..47363169, -
9.07e-18FFCP PHASE1:Hg19::chr1:208252658..208252675,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr1:208252658..208252675, -
9.07e-18FFCP PHASE2:Hg19::chr15:57860130..57860134,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr15:57860130..57860134, +
9.07e-18FFCP PHASE2:Hg19::chr13:45965544..45965564,-#_2017202f3d510cc0a226a9fe2c2c5c3ep4@RCN1P2
9.07e-18FFCP PHASE1:Hg19::chr15:57860130..57860134,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr15:57860130..57860134, +
9.07e-18FFCP PHASE1:Hg19::chr13:45965544..45965564,-#_2017202f3d510cc0a226a9fe2c2c5c3ep4@RCN1P2
9.07e-18FFCP PHASE2:Hg19::chr11:68450506..68450518,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr11:68450506..68450518, +
9.07e-18FFCP PHASE2:Hg19::chr12:78224657..78224661,+#_2017202f3d510cc0a226a9fe2c2c5c3ep42@NAV3
9.07e-18FFCP PHASE2:Hg19::chr20:6517713..6517716,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr20:6517713..6517716, +
9.07e-18FFCP PHASE1:Hg19::chr3:78666867..78666875,-#_2017202f3d510cc0a226a9fe2c2c5c3ep43@ROBO1
9.07e-18FFCP PHASE2:Hg19::chr8:119452230..119452235,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr8:119452230..119452235, +
9.07e-18FFCP PHASE1:Hg19::chr20:6517713..6517716,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr20:6517713..6517716, +
9.07e-18FFCP PHASE2:Hg19::chr3:78666867..78666875,-#_2017202f3d510cc0a226a9fe2c2c5c3ep43@ROBO1
9.07e-18FFCP PHASE2:Hg19::chr11:8124893..8124895,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr11:8124893..8124895, +
9.07e-18FFCP PHASE1:Hg19::chr11:68450506..68450518,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr11:68450506..68450518, +
9.07e-18FFCP PHASE1:Hg19::chr8:119452230..119452235,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr8:119452230..119452235, +
9.07e-18FFCP PHASE2:Hg19::chr13:106251902..106251908,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr13:106251902..106251908, -
9.07e-18FFCP PHASE1:Hg19::chr12:78224657..78224661,+#_2017202f3d510cc0a226a9fe2c2c5c3ep42@NAV3
9.07e-18FFCP PHASE1:Hg19::chr3:185826157..185826169,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr3:185826157..185826169, -
9.07e-18FFCP PHASE2:Hg19::chr3:185826157..185826169,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr3:185826157..185826169, -
9.07e-18FFCP PHASE1:Hg19::chr4:67292646..67292650,-#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr4:67292646..67292650, -
9.07e-18FFCP PHASE1:Hg19::chr11:8124893..8124895,+#_2017202f3d510cc0a226a9fe2c2c5c3ep@chr11:8124893..8124895, +
1.44e-17FFCP PHASE2:Hg19::chr2:102758378..102758401,+#_1c90ff4949ee5fe10563aad50ffc228ep31@IL1R1
1.44e-17FFCP PHASE1:Hg19::chr2:102758378..102758401,+#_1c90ff4949ee5fe10563aad50ffc228ep31@IL1R1
2.41e-17FFCP PHASE2:Hg19::chr22:50553000..50553012,+#_8cfdcce6a7b3e647d0e8ecafcf7c5ae1p2@MOV10L1
2.41e-17FFCP PHASE1:Hg19::chr22:50553000..50553012,+#_8cfdcce6a7b3e647d0e8ecafcf7c5ae1p2@MOV10L1
9.36e-17FFCP PHASE2:Hg19::chr15:66874502..66874507,+#_48aba1d27a5bf5e27bf648ac5b33e8dbp1@ENST00000558797, p1@uc002aqe.2
9.36e-17FFCP PHASE1:Hg19::chr15:66874502..66874507,+#_48aba1d27a5bf5e27bf648ac5b33e8dbp1@ENST00000558797, p1@uc002aqe.2
1.6e-16FFCP PHASE2:Hg19::chr8:11561453..11561466,+#_9eae41ff1b8fb2367bbdecb26baf964ap2@GATA4
1.6e-16FFCP PHASE1:Hg19::chr8:11561453..11561466,+#_9eae41ff1b8fb2367bbdecb26baf964ap2@GATA4
2.03e-16FFCP PHASE2:Hg19::chr13:38171411..38171427,-#_206d9858ca3690b671dc2b85ec242238p@chr13:38171411..38171427, -
2.03e-16FFCP PHASE1:Hg19::chr13:38171411..38171427,-#_206d9858ca3690b671dc2b85ec242238p@chr13:38171411..38171427, -
3.38e-16FFCP PHASE1:Hg19::chrX:86773106..86773119,+#_b5cbe2c4e1dc09e6cc2a25689663896bp5@KLHL4
3.38e-16FFCP PHASE2:Hg19::chrX:86773106..86773119,+#_b5cbe2c4e1dc09e6cc2a25689663896bp5@KLHL4
3.43e-16FFCP PHASE1:Hg19::chr4:125633260..125633270,-#_cac3cf59421d760f122a541e9c429a96p@chr4:125633260..125633270, -
3.43e-16FFCP PHASE2:Hg19::chr4:125633260..125633270,-#_cac3cf59421d760f122a541e9c429a96p@chr4:125633260..125633270, -
1.22e-15FFCP PHASE1:Hg19::chr14:59100774..59100790,+#_74b0d1f2f4715c800a616b1ccfe19a04p8@DACT1
1.22e-15FFCP PHASE2:Hg19::chr14:59100774..59100790,+#_74b0d1f2f4715c800a616b1ccfe19a04p8@DACT1
3.72e-15FFCP PHASE1:Hg19::chr4:157264637..157264638,-#_885d4ba78cb312278af04723a9338f40p@chr4:157264637..157264638, -
3.72e-15FFCP PHASE2:Hg19::chr4:157264637..157264638,-#_885d4ba78cb312278af04723a9338f40p@chr4:157264637..157264638, -
1.52e-14FFCP PHASE2:Hg19::chr19:13227319..13227326,-#_52317aafa55849da6f088e0e310e5f08p6@TRMT1
1.52e-14FFCP PHASE1:Hg19::chr19:13227319..13227326,-#_52317aafa55849da6f088e0e310e5f08p6@TRMT1
3.33e-14FFCP PHASE1:Hg19::chrX:86773039..86773065,+#_4a4100396d35b4baa40db916ee8bda3bp2@AB385497
3.33e-14FFCP PHASE2:Hg19::chrX:86773039..86773065,+#_4a4100396d35b4baa40db916ee8bda3bp2@AB385497

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002548&oldid=3275496"