Swissregulon:TEF.p1: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{SwissregulonMotif
|datasource=http://www.swissregulon.unibas.ch/
|name=TEF.p1
|associated_transcription_factors=1.000:7008:TEF:thyrotrophic embryonic factor::NM_003216:
...") |
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(3 intermediate revisions by the same user not shown) | |||
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{{SwissregulonMotif | {{SwissregulonMotif | ||
|associated_transcription_factors=1.000:7008:TEF:thyrotrophic embryonic factor::NM_003216: | |||
|datasource=http://www.swissregulon.unibas.ch/ | |datasource=http://www.swissregulon.unibas.ch/ | ||
|gostat_on_mara_hg19=GO:0044464!cell part!0.00205817401513111!7021;9782;22927;4222;23481;2845;5998;1124;6309;53918;374462;89795;2119;415117;6326;8989;27340;5144;221074;8756;221301;116441;26257;56103;139596;387836;10584;9874;643803;59269;1129;8605;7432;6258;4921;1107;3237;6139;2064;54762;56052;6469;221981;3163;9073;56101;54329;3206;114757;169522;3559;134430;169792;2629;13;3685;59272;8689;2935;10128;3228;259266;56125;27255;64776;9407;153745;5142;1742;162605;56106;2028;54829;6097;84159$GO:0007275!multicellular organismal development!0.00205817401513111!7021;26257;4222;3685;1129;3228;3206;56125;27255;3237;2064;27302;2119;1742;6469;2028$GO:0016020!membrane!0.00649526482437962!9073;9782;56101;54329;2845;5998;1124;6309;169522;374462;89795;3559;415117;6326;8989;5144;221074;8756;221301;116441;56103;13;387836;2629;3685;1129;59272;8605;10128;56125;4921;27255;9407;2064;54762;56052;1742;6469;221981;56106;2028;54829$GO:0005886!plasma membrane!0.00994785025946872!9073;56103;56101;3685;59272;1129;54329;2845;56125;27255;4921;9407;169522;2064;3559;1742;6326;6469;56106;8989;2028$GO:0032501!multicellular organismal process!0.00994785025946872!7021;26257;4222;3685;1129;7432;3228;3206;56125;27255;9407;3237;169522;2064;27302;134430;2119;1742;6469;8989;2028$GO:0032502!developmental process!0.0100491055233457!7021;26257;4222;3685;1129;2935;23481;3228;3206;56125;27255;3237;2064;27302;3559;2119;1742;6469;2028$GO:0007399!nervous system development!0.0110679152903957!56125;27255;7021;26257;2064;1129;1742;6469$GO:0048856!anatomical structure development!0.0110679152903957!56125;27255;7021;26257;2064;27302;3685;1129;1742;2119;6469;23481;2028$GO:0008283!cell proliferation!0.0110679152903957!4921;2064;3559;27302;6469;7432;2028;23481;27340$GO:0044425!membrane part!0.0110679152903957!9073;9782;56101;54329;2845;6309;169522;374462;89795;3559;6326;8989;221074;8756;221301;116441;56103;13;387836;3685;1129;59272;10128;56125;4921;9407;54762;2064;56052;1742;6469;56106;221981;2028$GO:0004115!3',5'-cyclic-AMP phosphodiesterase activity!0.0111776142997654!5144;5142$GO:0044459!plasma membrane part!0.013359788581646!9073;56125;4921;9407;169522;2064;3685;1129;1742;6326;6469;8989;2028;2845$GO:0048731!system development!0.0139000154485437!56125;27255;7021;26257;2064;27302;3685;1129;1742;2119;6469;2028$GO:0005640!nuclear outer membrane!0.0227123340586152!89795;10128$GO:0043565!sequence-specific DNA binding!0.0227123340586152!6258;3206;7021;26257;3237;4222;2119;6097;3228$GO:0005887!integral to plasma membrane!0.0307322786594648!56125;4921;9407;169522;3685;1129;6326;8989;2028;2845$GO:0031226!intrinsic to plasma membrane!0.0319414439012706!56125;4921;9407;169522;3685;1129;6326;8989;2028;2845$GO:0016021!integral to membrane!0.0331985786433306!221074;9073;8756;221301;116441;56103;387836;13;56101;3685;59272;1129;54329;2845;56125;4921;6309;9407;169522;374462;2064;54762;3559;56052;6326;221981;56106;8989;2028$GO:0045941!positive regulation of transcription!0.0331985786433306!59269;2119;7021;6469;169792$GO:0031224!intrinsic to membrane!0.0331985786433306!221074;9073;8756;221301;116441;56103;387836;13;56101;3685;59272;1129;54329;2845;56125;4921;6309;9407;169522;374462;2064;54762;3559;56052;6326;221981;56106;8989;2028$GO:0001568!blood vessel development!0.0331985786433306!3685;6469;2064;2028$GO:0005637!nuclear inner membrane!0.0331985786433306!9782;10128$GO:0045935!positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0331985786433306!59269;2119;7021;6469;169792$GO:0001944!vasculature development!0.0331985786433306!3685;6469;2064;2028$GO:0030336!negative regulation of cell migration!0.0392642167680635!6469;27302$GO:0005626!insoluble fraction!0.0399890637753524!5144;5142$GO:0007267!cell-cell signaling!0.0399890637753524!56125;1742;6469;7432;2064;2028$GO:0051271!negative regulation of cell motility!0.0399890637753524!6469;27302$GO:0007422!peripheral nervous system development!0.0399890637753524!2064$GO:0040013!negative regulation of locomotion!0.0399890637753524!6469;27302$GO:0007507!heart development!0.0399890637753524!6469;2064;27302$GO:0007156!homophilic cell adhesion!0.0399890637753524!56125;56103;56106;56101$GO:0016337!cell-cell adhesion!0.0399890637753524!9073;56125;56103;56106;56101$GO:0000267!cell fraction!0.0399890637753524!13;5142;1129;8989;7432;3163;5144$GO:0031325!positive regulation of cellular metabolic process!0.0399890637753524!59269;2119;7021;6469;169792$GO:0043169!cation binding!0.0399890637753524!221074;8756;23613;9782;56103;2629;51200;56101;3685;59269;59272;6258;56125;1124;6309;1107;114757;169522;2064;6326;56106;8989;6097;2028;8975;169792;3163$GO:0009266!response to temperature stimulus!0.0399890637753524!11080;8989$GO:0046996!oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with NADH or NADPH as one donor, and the other dehydrogenated!0.0399890637753524!6309$GO:0033079!immature T cell proliferation!0.0399890637753524!2064$GO:0004578!chitobiosyldiphosphodolichol beta-mannosyltransferase activity!0.0399890637753524!56052$GO:0033083!regulation of immature T cell proliferation!0.0399890637753524!2064$GO:0060019!radial glial cell differentiation!0.0399890637753524!6469$GO:0033612!receptor serine/threonine kinase binding!0.0399890637753524!27302$GO:0033084!regulation of immature T cell proliferation in the thymus!0.0399890637753524!2064$GO:0032435!negative regulation of proteasomal ubiquitin-dependent protein catabolic process!0.0399890637753524!6469$GO:0046639!negative regulation of alpha-beta T cell differentiation!0.0399890637753524!6469$GO:0007228!activation of hh target transcription factor!0.0399890637753524!6469$GO:0045581!negative regulation of T cell differentiation!0.0399890637753524!6469$GO:0050046!lathosterol oxidase activity!0.0399890637753524!6309$GO:0007000!nucleolus organization and biogenesis!0.0399890637753524!23481$GO:0004845!uracil phosphoribosyltransferase activity!0.0399890637753524!139596$GO:0060020!Bergmann glial cell differentiation!0.0399890637753524!6469$GO:0050955!thermoception!0.0399890637753524!8989$GO:0004230!glutamyl aminopeptidase activity!0.0399890637753524!2028$GO:0007227!signal transduction downstream of smoothened!0.0399890637753524!6469$GO:0033087!negative regulation of immature T cell proliferation!0.0399890637753524!2064$GO:0033080!immature T cell proliferation in the thymus!0.0399890637753524!2064$GO:0046636!negative regulation of alpha-beta T cell activation!0.0399890637753524!6469$GO:0033088!negative regulation of immature T cell proliferation in the thymus!0.0399890637753524!2064$GO:0044453!nuclear membrane part!0.0430952815158111!9782;89795;10128$GO:0048522!positive regulation of cellular process!0.0430952815158111!4921;7021;2064;59269;2119;6469;7432;169792$GO:0008284!positive regulation of cell proliferation!0.0430952815158111!4921;6469;7432;2064$GO:0016477!cell migration!0.0430952815158111!6469;2064;2028;27302$GO:0022610!biological adhesion!0.0430952815158111!3685;9073;56125;4921;27255;56103;56106;56101$GO:0007155!cell adhesion!0.0430952815158111!3685;9073;56125;4921;27255;56103;56106;56101$GO:0007409!axonogenesis!0.043437395981703!6469;26257;2064$GO:0009893!positive regulation of metabolic process!0.0444961836930961!59269;2119;7021;6469;169792$GO:0042129!regulation of T cell proliferation!0.046205607295992!6469;2064$GO:0048667!neuron morphogenesis during differentiation!0.0470840258613374!6469;26257;2064$GO:0048812!neurite morphogenesis!0.0470840258613374!6469;26257;2064$GO:0043167!ion binding!0.0470840258613374!221074;8756;23613;9782;56103;2629;51200;56101;3685;59269;59272;6258;56125;1124;6309;1107;114757;169522;2064;6326;56106;8989;6097;2028;8975;5144;169792;3163$GO:0001822!kidney development!0.0471224779133834!7021;6469$GO:0000904!cellular morphogenesis during differentiation!0.0471224779133834!6469;26257;2064$GO:0005634!nucleus!0.0471224779133834!7021;26257;9782;22927;139596;9874;4222;23481;10128;5998;3228;6258;259266;3206;53918;64776;1107;153745;3237;89795;134430;2119;6097;27340;169792;84159$GO:0005515!protein binding!0.0471224779133834!9073;7021;9782;56101;23481;5998;1124;53918;9068;169522;3559;415117;11080;27340;23613;56103;9874;3685;59272;54477;8689;2935;10128;7432;259266;56125;27255;1107;2064;27302;1742;6469;56106;54829$GO:0001525!angiogenesis!0.0471224779133834!6469;2064;2028$GO:0050808!synapse organization and biogenesis!0.0471224779133834!56125;2064$GO:0042098!T cell proliferation!0.0471224779133834!6469;2064$GO:0001655!urogenital system development!0.0471224779133834!7021;6469$GO:0030217!T cell differentiation!0.0471224779133834!6469;2064$GO:0044452!nucleolar part!0.0471224779133834!27340;134430$GO:0031175!neurite development!0.0471224779133834!6469;26257;2064$GO:0046637!regulation of alpha-beta T cell differentiation!0.0471224779133834!6469$GO:0001618!viral receptor activity!0.0471224779133834!59272$GO:0001672!regulation of chromatin assembly or disassembly!0.0471224779133834!9874$GO:0046475!glycerophospholipid catabolic process!0.0471224779133834!8605$GO:0022612!gland morphogenesis!0.0471224779133834!6469$GO:0016539!intein-mediated protein splicing!0.0471224779133834!6469$GO:0043237!laminin-1 binding!0.0471224779133834!6469$GO:0000248!C-5 sterol desaturase activity!0.0471224779133834!6309$GO:0043587!tongue morphogenesis!0.0471224779133834!6469$GO:0004392!heme oxygenase (decyclizing) activity!0.0471224779133834!3163$GO:0043586!tongue development!0.0471224779133834!6469$GO:0030908!protein splicing!0.0471224779133834!6469$GO:0006788!heme oxidation!0.0471224779133834!3163$GO:0007435!salivary gland morphogenesis!0.0471224779133834!6469$GO:0005113!patched binding!0.0471224779133834!6469$GO:0021978!telencephalon regionalization!0.0471224779133834!6469$GO:0007197!muscarinic acetylcholine receptor, adenylate cyclase inhibiting pathway!0.0471224779133834!1129$GO:0032944!regulation of mononuclear cell proliferation!0.0471224779133834!6469;2064$GO:0050670!regulation of lymphocyte proliferation!0.0471224779133834!6469;2064$GO:0045944!positive regulation of transcription from RNA polymerase II promoter!0.0489280222747006!7021;6469;169792$GO:0048518!positive regulation of biological process!0.0497196713714859!4921;7021;2064;59269;2119;6469;7432;169792 | |||
|gostat_on_mara_mm9=GO:0005667!transcription factor complex!0.00501079593888307!15432;21343;15395;15431;72504;15416;13819$GO:0043565!sequence-specific DNA binding!0.00501079593888307!20183;15432;15395;104156;20230;15431;15416$GO:0009887!organ morphogenesis!0.00670036757921608!15432;15395;104156;15431;237523;15416;13819$GO:0044451!nucleoplasm part!0.00670036757921608!15432;21343;15395;15431;72504;15416;13819$GO:0043233!organelle lumen!0.00670036757921608!67270;15432;15395;15431;72504;15416;13819;21343$GO:0031974!membrane-enclosed lumen!0.00670036757921608!67270;15432;15395;15431;72504;15416;13819;21343$GO:0005654!nucleoplasm!0.00670036757921608!15432;21343;15395;15431;72504;15416;13819$GO:0003700!transcription factor activity!0.01020509106277!20183;15432;15395;104156;20230;15431;15416;13819$GO:0031981!nuclear lumen!0.0151249549923509!15432;21343;15395;15431;72504;15416;13819$GO:0044446!intracellular organelle part!0.0157488425664565!67270;15432;12316;15395;72003;15431;72504;15416;13819;21343;11468;20230;72155$GO:0044422!organelle part!0.0157488425664565!67270;15432;12316;15395;72003;15431;72504;15416;13819;21343;11468;20230;72155$GO:0044428!nuclear part!0.0246467941364277!15432;15395;15431;72504;15416;13819;21343;20230$GO:0043234!protein complex!0.0301835492130581!15432;15395;15431;72504;15416;13819;21343;109700;73677;93834$GO:0048513!organ development!0.0359768470080187!15432;12316;15395;15431;237523;15416;13819;11468;104156$GO:0007389!pattern specification process!0.0392719165972911!15432;15395;15431;15416$GO:0032991!macromolecular complex!0.0392719165972911!67270;15432;15395;15431;72504;15416;13819;21343;109700;73677;93834$GO:0051642!centrosome localization!0.0424802117102847!12316$GO:0051661!maintenance of centrosome localization!0.0424802117102847!12316$GO:0021873!forebrain neuroblast division!0.0424802117102847!12316$GO:0009786!regulation of asymmetric cell division!0.0424802117102847!12316$GO:0045769!negative regulation of asymmetric cell division!0.0424802117102847!12316$GO:0051782!negative regulation of cell division!0.0424802117102847!12316$GO:0055057!neuroblast division!0.0424802117102847!12316 | |||
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| |||
|name=TEF.p1 | |name=TEF.p1 | ||
|weight_matrix=NA:TEF.p1;PO:A:C:G:T;01:158.304842:9.059196:15.748612:45.036793;02:12.650436:6.668963:6.20794:202.622104;03:63.292349:8.868027:137.398655:18.590412;04:14.328043:34.259319:23.590397:155.971684;05:49.034115:9.980331:7.908698:161.226299;06:80.572976:20.958872:8.136385:118.48121;07:168.646146:8.211417:11.051581:40.240299;08:71.738123:54.56994:5.536963:96.304417;09:174.643279:3.629825:38.592915:11.283424;10:25.079477:42.963661:9.029864:151.076441;11:204.072356:6.402191:10.274274:7.400622;12:209.341539:2.935438:8.476164:7.396302 | |weight_matrix=NA:TEF.p1;PO:A:C:G:T;01:158.304842:9.059196:15.748612:45.036793;02:12.650436:6.668963:6.20794:202.622104;03:63.292349:8.868027:137.398655:18.590412;04:14.328043:34.259319:23.590397:155.971684;05:49.034115:9.980331:7.908698:161.226299;06:80.572976:20.958872:8.136385:118.48121;07:168.646146:8.211417:11.051581:40.240299;08:71.738123:54.56994:5.536963:96.304417;09:174.643279:3.629825:38.592915:11.283424;10:25.079477:42.963661:9.029864:151.076441;11:204.072356:6.402191:10.274274:7.400622;12:209.341539:2.935438:8.476164:7.396302 | ||
}} | }} |
Latest revision as of 10:01, 17 April 2012
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Motif Activities (MARA) on Phase1 data
hg19
Chart |
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Sample of clicked point: |
mm9
Z-value table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Chart |
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Sample of clicked point: |
GOStat results on predicted Motif target
hg19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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mm9 | ||||||||||||||||||||||||||||||||||||||||||||||||
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