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Browse Transcription Factors hg19: Difference between revisions

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Line 2: Line 2:
|?GeneID
|?GeneID
|?Symbol
|?Symbol
|?Associated jaspar id
|?Associated motif id
|?Description
|?Description
|format=array
|format=array
Line 9: Line 9:
|order=DESC
|order=DESC
|mainlabel=-
|mainlabel=-
|sep=:
|sep=?
|propsep=/
|propsep=/
|limit=
|manysep=!
|manysep=!
|recordsep=<RCRD>
|recordsep=<RCRD>
Line 18: Line 17:
{{#vardefine:db_content}}
{{#vardefine:db_content}}


{{#arraydefine:geneids_array|{{#var:geneids_content}}|:}}
{{#arraydefine:geneids_array|{{#var:geneids_content}}|?}}


{{
{{
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   | {{#arraysize:geneids_array}}
   | {{#arraysize:geneids_array}}
   | <nowiki/>
   | <nowiki/>
{{#vardefine:ID|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|0 }} }}
{{#vardefine:ID|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|0}}}}
{{#vardefine:Symbol|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|1 }} }}
{{#vardefine:Symbol|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|1}}}}
{{#vardefine:MotifId|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|2 }} }}
{{#vardefine:MotifId|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|2}}}}
{{#vardefine:Description|{{#explode:{{#arrayindex:geneids_array| {{#var:j}} }}|/|3 }} }}
{{#vardefine:Description|{{#explode:{{#arrayindex:geneids_array|{{#var:j}}}}|/|3}}}}
{{#vardefine:PeakCount|{{#ask: [[Category:FFCP]][[EntrezGene::{{#var:ID}}]]|format=count}}}}
{{#vardefine:PeakCount|{{#ask: [[Category:FFCP]][[EntrezGene::{{#var:ID}}]]|format=count}}}}


{{#arraydefine: defined_array{{#var:j}} |{{#var:ID}}/{{#var:Symbol}}/{{#var:MotifId}}/{{#var:Description}}/{{#var:PeakCount}}}}
{{#arraydefine: defined_array{{#var:j}} |{{#var:ID}}/{{#var:Symbol}}/{{#var:MotifId}}/{{#var:Description}}/{{#var:PeakCount}}}}
{{#vardefine:db_content|{{#arrayprint:defined_array{{#var:j}} }}:{{#var:db_content}}  }}
{{#vardefine:db_content|{{#arrayprint:defined_array{{#var:j}}}}?{{#var:db_content}}  }}


}}
}}
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<html>
<html>
<script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
                @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";


.ImageBorder
.ImageBorder
Line 50: Line 50:


</style>
</style>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/ZeroClipboard.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.js">
</script>
<script type="text/javascript">
<script type="text/javascript">
             var content = "";
             var content = "";
Line 62: Line 58:
                     content= "</html>{{#var:db_content}}<html>";
                     content= "</html>{{#var:db_content}}<html>";


                     var content_array = content.split(":");
                     var content_array = content.split("?");
                     for(i=0;i<content_array.length-1;i++){
                     for(i=0;i<content_array.length-1;i++){
                     var temp = content_array[i];
                     var temp = content_array[i];
Line 69: Line 65:
                         if(temp_array[2].length> 0){ mot_id=temp_array[2];}else{mot_id="NA";}
                         if(temp_array[2].length> 0){ mot_id=temp_array[2];}else{mot_id="NA";}
                      
                      
                     m_data.content.push({EntrezGene:'<a href=/resource_browser/EntrezGene:'+temp_array[0]+'>'+temp_array[0]+'</a>',            Symbol:temp_array[1],MotifId:mot_id,Description:temp_array[3],PeakCount:temp_array[4]});
                     m_data.content.push({EntrezGene:'<a href=/5/sstar/EntrezGene:'+temp_array[0]+'>'+temp_array[0]+'</a>',            Symbol:temp_array[1],MotifId:mot_id,Description:temp_array[3],PeakCount:temp_array[4]});
                  
                  
                 }
                 }
var oTable = $('#tf_table').dataTable( {
$('#tf_table').DataTable( {
                 "bProcessing": true,
        dom: 'Blfrtip',
                 "iDisplayLength":25,
                 processing: true,
                "aLengthMenu": [[10,25,50, -1], [10,25,50, "All"]],
                 pageLength: 25,
                 "bScrollCollapse": true,
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
"bPaginate": true,
        lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]],
"bFilter": true,
                 scrollCollapse: true,
"bInfo": true,
                 autoWidth: false,  
                 "bAutoWidth": false,  
                 jQueryUI: false,
                 "bJQueryUI": false,
                 order: [[ 2, "asc" ]],
                 "aaSorting": [[ 2, "asc" ]],
                 data: m_data.content,
                 "aaData": m_data.content,
        columns: [
                "aoColumns":[
{ data: "EntrezGene", title: "EntrezGene"},
                                {"mData": "EntrezGene","sTitle": "EntrezGene"},  
            { data: "Symbol", title: "Symbol"},
                                {"mData": "Symbol","sTitle": "Symbol"},  
            { data: "MotifId", title: "Associated Motif",
                                {"mData": "MotifId","sTitle":"Associated Motif",
              render: function ( data, type, row, meta ) {
                                              "fnRender": function( obj ) {
var motid = data;
var motid = obj.aData.MotifId;
if (motid == "NA") {
if(motid == "NA"){
    return_val = "NA";
return_val= "NA";
} else {
}else{
    var splitted = motid.split("!");
var splitted = motid.split("!");
    if (splitted!=null) {
if(splitted!=null)
        if (splitted.length > 1) {
{
            var return_val = "";
  if(splitted.length>1)
            for (i = 0; i < splitted.length; i++) {
  {
                if (splitted[i].toString().indexOf("JASPAR motif") >= 0) {
  var return_val=""
                    return_val = '<a href=\"/5/sstar/' + splitted[i] + '\"><img src=\"/5/sstar/seqlogo/jaspar/' + splitted[i].split(":")[1] + '.png"  class="ImageBorder"  alt="' + splitted[i] + '">' + '</a>' + return_val;
  for(i=0;i<splitted.length;i++)
                } else if (splitted[i].toString().indexOf("Swissregulon") >= 0) {
  return_val='<a href=\"/resource_browser/'+"JASPAR_Motif:"+splitted[i]+'\"><img src=\"/resource_browser/seqlogos/jaspar/' + splitted[i] + '.png"  class="ImageBorder"  alt="'+splitted[i]+'">'+'</a>' +return_val;
                    /*return_val = '<a href=\"/5/sstar/'+ splitted[i] + '\"><img src=\"/5/sstar/seqlogo/' + replaceAll(splitted[i].split(":")[1]," ","_") + '.png"  class="ImageBorder"  alt="' + splitted[i] + '">' + '</a>' + return_val;*/
                                                                               
return_val = "";
  }                                                                        
                }
  else{
                else{
return_val='<a href=\"/resource_browser/'+"JASPAR_Motif:"+obj.aData.MotifId+'\"><img src="/resource_browser/seqlogos/jaspar/' + obj.aData.MotifId + '.png"  class="ImageBorder"  alt="'+obj.aData.MotifId+'">'+'</a>';
                    return_val = "";
  }  
                }
}  
            }
else  
        } else {
{
            if (splitted[0].toString().indexOf("JASPAR motif") >= 0) {
  return_val= "NA"
                return_val = '<a href=\"/5/sstar/' + splitted[0] + '\"><img src=\"/5/sstar/seqlogo/jaspar/' + splitted[0].split(":")[1] + '.png"  class="ImageBorder"  alt="' + splitted[0] + '">' + '</a>';
}
            } else if (splitted[0].toString().indexOf("Swissregulon") >= 0) {
 
              /* return_val = '<a href=\"/5/sstar/' + splitted[0] + '\"><img src=\"/5/sstar/seqlogo/' + replaceAll(splitted[0].split(":")[1]," ","_") + '.png"  class="ImageBorder"  alt="' + splitted[0] + '">' + '</a>';*/
return_val = "";
            }
            else{
                    return_val = "";
                }
        }
    } else {
        return_val = "NA";
    }
}
}


  return return_val
  return return_val;
  }
  }
                                 },
                                 },
                                 {"mData": "Description","sTitle": "Description"},  
                                 {data: "Description",title: "Description"},  
                                 {"mData": "PeakCount","sTitle": "#of peaks"}
                                 {data: "PeakCount",title: "#of peaks"}
                                 ]
                                 ]
} );
} );


var oTableTools = new TableTools( oTable, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});


$('#export_tool').before( oTableTools.dom.container );
} );


 
function replaceAll(str, token, newtoken) {
} );
    if(token!=newtoken)
    while(str.indexOf(token) > -1) {
        str = str.replace(token, newtoken);
    }
    return str;
}
</script>
</script>
<span id="export_tool"></span>
<span id="export_tool"></span>
</html>
</html>


<table cellpadding="0" cellspacing="0" border="0" class="display" id="tf_table">   
<table cellpadding="0" cellspacing="0" border="0" class="stripe cell-border order-column compact" id="tf_table">   
</table>
</table>

Latest revision as of 09:57, 21 September 2021



Human transcription factors

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