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{{f5samples
{{f5samples
|id=FF:10212-103G5
|DRA_sample_Accession=chicken_CAGE@SAMD00053748
|name=chicken embryo whole body,06hr (HH1-2)
|accession_numbers=chicken_CAGE;DRX057277;DRR063036;DRZ007531;DRZ007563
|sample_id=10212
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=103G5
|rna_box=103
|rna_position=G5
|sample_cell_lot=#3
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Chicken (Gallus gallus)
|sample_strain=
|sample_dev_stage=HH1-2
|sample_tissue=whole body
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=50
|rna_concentration=0.31
|sample_note=Roughly equivalent of mouse E6
|profile_hcage=CNhs13028,LSID999,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000922,UBERON:0001062
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000032,FF:0000001,FF:0000242,FF:0000217,FF:0000004,FF:0000225
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 36:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|id=FF:10212-103G5
|is_a=EFO:0002091;;FF:0000004;;FF:0000225
|is_obsolete=
|library_id=CNhs13028
|name=chicken embryo whole body,06hr (HH1-2)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13028,LSID999,release012,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=,,,
|rna_box=103
|rna_catalog_number=
|rna_concentration=0.31
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=G5
|rna_rin=
|rna_sample_type=
|rna_tube_id=103G5
|rna_weight_ug=50
|sample_age=
|sample_category=tissues
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=#3
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=
|sample_company=
|sample_description=
|sample_dev_stage=HH1-2
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=10212
|sample_note=Roughly equivalent of mouse E6
|sample_sex=
|sample_species=Gallus gallus
|sample_strain=
|sample_tissue=whole body
|top_motifs=
|top_motifs=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_chicken;search_select_hide=table111:FF:10212-103G5;search_select_hide=table117:FF:10212-103G5
}}
}}

Latest revision as of 09:37, 5 June 2020


Name:chicken embryo whole body,06hr (HH1-2)
Species:Gallus gallus
Library ID:CNhs13028
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissuewhole body
dev stageHH1-2
sexNA
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
chicken_CAGE  SAMD00053748
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13028 chicken_CAGE DRX057277 DRR063036
Accession ID

Library idBAMCTSS
CNhs13028 DRZ007531 DRZ007563



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000032 (chicken sample)
0000001 (sample)
0000242 (chicken developmental series)
0000217 (chicken whole embryo)
0000004 (tissue sample)
0000225 (chicken embryo whole body 6 hours HH1-2)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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