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{{f5samples
{{f5samples
|DRA_sample_Accession=chicken_CAGE@SAMD00053745
|DRA_sample_Accession=chicken_CAGE@SAMD00053745
|accession_numbers=chicken_CAGE;DRX057267;DRR063026;DRZ007521;DRZ007553
|DRA_sample_Accession_Zoo=chicken_sRNA@SAMD00053745
|accession_numbers=chicken_CAGE;DRX057267;DRR063026;DRZ007521;DRZ00755375;DRZ014422!chicken_sRNA;DRX163585;DRR172974;DRZ014421!chicken_sRNA;DRX163586;DRR172975;DRZ014422
|accession_numbers_Zoo=chicken_sRNA;DRX163585;DRR172974;DRZ014421!chicken_sRNA;DRX163586;DRR172975;DRZ014422
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|sample_note=
|sample_note=
|sample_sex=unknown
|sample_sex=unknown
|sample_species=Chicken (Gallus gallus)
|sample_species=Gallus gallus
|sample_strain=
|sample_strain=
|sample_tissue=whole body
|sample_tissue=whole body
|top_motifs=
|top_motifs=
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_chicken;search_select_hide=table111:FF:10004-101A9;search_select_hide=table117:FF:10004-101A9
|zoo_library_id=SRhi10006.GGCTAC!SRhi10007.GGTAGC
}}
}}

Latest revision as of 09:37, 5 June 2020


Name:chicken embryo whole body, day10 (HH37)
Species:Gallus gallus
Library ID:CNhs10485
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissuewhole body
dev stage10 days embryo
sexunknown
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationGuojun Sheng (RIKEN CDB)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
chicken_CAGE  SAMD00053745
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10485 chicken_CAGE DRX057267 DRR063026
chicken_sRNA DRX163585 DRR172974
chicken_sRNA DRX163586 DRR172975
Accession ID

Library idBAMCTSS
CNhs10485 DRZ007521 DRZ00755375
DRZ014421
DRZ014422
Accession ID

Library idBAMCTSS
CNhs10485 DRZ014422

sRNA Accession numbers
MethodSample accession id
chicken_sRNA  SAMD00053745
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GGCTAC chicken_sRNA DRX163585 DRR172974
SRhi10007.GGTAGC chicken_sRNA DRX163586 DRR172975
Accession ID

Library idBAMCTSS
SRhi10006.GGCTAC DRZ014421
SRhi10007.GGTAGC DRZ014422



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000032 (chicken sample)
0000001 (sample)
0000004 (tissue sample)
0000649 (10 days sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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