FF:787-43B6: Difference between revisions

Latest revision as of 19:20, 4 June 2020

Name:	pancreas, neonate N16
Species:	Mouse (Mus musculus)
Library ID:	CNhs11136
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	pancreas
dev stage	16 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005979

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11136		CAGE		DRX009063		DRR009937

Accession ID Mm9

Library id		BAM		CTSS
CNhs11136		DRZ001362		DRZ002745

Accession ID Mm10

Library id		BAM		CTSS
CNhs11136		DRZ012712		DRZ014095

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11136

0	0
1	0
10	0
100	0
1000	0.177
1001	0.0443
1002	0.00856
1003	0.0202
1004	0
1005	0
1006	0.147
1007	0.0365
1008	0
1009	0.0227
101	0.103
1010	0.213
1011	-0.108
1012	0.0687
1013	0.586
1014	0.114
1015	-0.119
1016	-0.202
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.767
1023	0
1024	0.0294
1025	0.39
1026	0
1027	-0.048
1028	0
1029	0.0704
103	0.0474
1030	0.119
1031	-0.0891
1032	-0.00405
1033	0
1034	0.956
1035	0
1036	0.12
1037	0
1038	-0.00865
1039	0.203
104	0
1040	-0.0399
1041	0.213

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11136

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.742
MA0003.1	MA0003.1	0.741
MA0004.1	MA0004.1	0.175
MA0006.1	MA0006.1	0.121
MA0007.1	MA0007.1	0.375
MA0009.1	MA0009.1	0.34
MA0014.1	MA0014.1	0.608
MA0017.1	MA0017.1	0.58
MA0018.2	MA0018.2	4.63207e-4
MA0019.1	MA0019.1	0.972
MA0024.1	MA0024.1	0.0325
MA0025.1	MA0025.1	0.633
MA0027.1	MA0027.1	0.978
MA0028.1	MA0028.1	0.903
MA0029.1	MA0029.1	0.655
MA0030.1	MA0030.1	0.375
MA0031.1	MA0031.1	0.964
MA0035.2	MA0035.2	0.27
MA0038.1	MA0038.1	0.796
MA0039.2	MA0039.2	0.325
MA0040.1	MA0040.1	0.697
MA0041.1	MA0041.1	0.365
MA0042.1	MA0042.1	0.704
MA0043.1	MA0043.1	0.00241
MA0046.1	MA0046.1	5.13428e-10
MA0047.2	MA0047.2	3.51619e-4
MA0048.1	MA0048.1	0.837
MA0050.1	MA0050.1	0.43
MA0051.1	MA0051.1	0.677
MA0052.1	MA0052.1	4.95524e-4
MA0055.1	MA0055.1	0.281
MA0057.1	MA0057.1	0.249
MA0058.1	MA0058.1	0.374
MA0059.1	MA0059.1	0.00188
MA0060.1	MA0060.1	0.0936
MA0061.1	MA0061.1	0.635
MA0062.2	MA0062.2	0.92
MA0065.2	MA0065.2	0.191
MA0066.1	MA0066.1	0.868
MA0067.1	MA0067.1	0.0798
MA0068.1	MA0068.1	0.962
MA0069.1	MA0069.1	0.356
MA0070.1	MA0070.1	0.632
MA0071.1	MA0071.1	0.627
MA0072.1	MA0072.1	0.39
MA0073.1	MA0073.1	0.996
MA0074.1	MA0074.1	0.307
MA0076.1	MA0076.1	0.593
MA0077.1	MA0077.1	0.225
MA0078.1	MA0078.1	0.517
MA0079.2	MA0079.2	0.844
MA0080.2	MA0080.2	0.966
MA0081.1	MA0081.1	0.397
MA0083.1	MA0083.1	0.741
MA0084.1	MA0084.1	0.721
MA0087.1	MA0087.1	0.695
MA0088.1	MA0088.1	0.0314
MA0090.1	MA0090.1	0.0809
MA0091.1	MA0091.1	4.01067e-4
MA0092.1	MA0092.1	0.17
MA0093.1	MA0093.1	0.191
MA0099.2	MA0099.2	0.00632
MA0100.1	MA0100.1	0.0056
MA0101.1	MA0101.1	0.921
MA0102.2	MA0102.2	0.157
MA0103.1	MA0103.1	1.351e-5
MA0104.2	MA0104.2	0.117
MA0105.1	MA0105.1	0.831
MA0106.1	MA0106.1	0.042
MA0107.1	MA0107.1	0.678
MA0108.2	MA0108.2	0.0117
MA0111.1	MA0111.1	0.654
MA0112.2	MA0112.2	1.17243e-4
MA0113.1	MA0113.1	0.708
MA0114.1	MA0114.1	0.779
MA0115.1	MA0115.1	0.995
MA0116.1	MA0116.1	0.895
MA0117.1	MA0117.1	0.539
MA0119.1	MA0119.1	0.67
MA0122.1	MA0122.1	0.324
MA0124.1	MA0124.1	0.2
MA0125.1	MA0125.1	0.222
MA0131.1	MA0131.1	0.923
MA0135.1	MA0135.1	0.687
MA0136.1	MA0136.1	0.255
MA0137.2	MA0137.2	0.00611
MA0138.2	MA0138.2	0.282
MA0139.1	MA0139.1	0.0846
MA0140.1	MA0140.1	0.4
MA0141.1	MA0141.1	0.314
MA0142.1	MA0142.1	0.569
MA0143.1	MA0143.1	0.29
MA0144.1	MA0144.1	0.0577
MA0145.1	MA0145.1	0.0817
MA0146.1	MA0146.1	0.367
MA0147.1	MA0147.1	0.0232
MA0148.1	MA0148.1	2.17951e-5
MA0149.1	MA0149.1	0.0417
MA0150.1	MA0150.1	0.723
MA0152.1	MA0152.1	0.521
MA0153.1	MA0153.1	0.0102
MA0154.1	MA0154.1	0.0118
MA0155.1	MA0155.1	0.336
MA0156.1	MA0156.1	0.574
MA0157.1	MA0157.1	0.32
MA0159.1	MA0159.1	0.577
MA0160.1	MA0160.1	0.836
MA0162.1	MA0162.1	0.444
MA0163.1	MA0163.1	0.0666
MA0164.1	MA0164.1	0.418
MA0258.1	MA0258.1	0.0525
MA0259.1	MA0259.1	0.497

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11136

Novel motif	Logo	P-value
1	1	0.0481
10	10	0.342
100	100	0.683
101	101	0.777
102	102	0.76
103	103	0.0649
104	104	0.513
105	105	0.826
106	106	0.0176
107	107	0.352
108	108	0.638
109	109	0.0462
11	11	0.256
110	110	0.0365
111	111	0.11
112	112	0.0915
113	113	0.174
114	114	0.807
115	115	0.915
116	116	0.539
117	117	0.286
118	118	0.219
119	119	0.101
12	12	0.386
120	120	0.891
121	121	0.252
122	122	0.197
123	123	0.424
124	124	0.764
125	125	0.522
126	126	0.126
127	127	0.62
128	128	0.0659
129	129	0.348
13	13	0.00407
130	130	0.219
131	131	0.607
132	132	0.743
133	133	0.0876
134	134	0.172
135	135	0.969
136	136	0.786
137	137	0.175
138	138	0.0269
139	139	0.488
14	14	0.759
140	140	0.0568
141	141	0.354
142	142	0.777
143	143	0.923
144	144	0.225
145	145	0.0253
146	146	0.315
147	147	0.364
148	148	0.0847
149	149	0.315
15	15	0.609
150	150	0.385
151	151	0.322
152	152	0.0106
153	153	0.69
154	154	0.169
155	155	0.454
156	156	0.0167
157	157	0.144
158	158	0.11
159	159	0.0092
160	160	0.152
161	161	0.392
162	162	0.855
163	163	0.775
164	164	0.276
165	165	0.236
166	166	0.549
167	167	0.411
168	168	0.53
169	169	0.0116
17	17	0.053
18	18	0.671
19	19	0.0209
2	2	0.527
20	20	0.716
21	21	0.491
22	22	0.403
23	23	0.598
24	24	0.0706
25	25	0.936
26	26	0.00386
27	27	0.604
28	28	0.773
29	29	0.322
3	3	0.396
30	30	0.788
31	31	0.417
32	32	0.55
33	33	0.98
34	34	0.678
35	35	0.45
36	36	0.485
37	37	0.031
38	38	0.527
39	39	0.228
4	4	0.274
40	40	0.827
41	41	0.139
42	42	0.182
43	43	0.286
44	44	0.817
45	45	0.824
46	46	0.108
47	47	0.772
48	48	0.329
49	49	0.117
5	5	0.525
50	50	0.504
51	51	0.628
52	52	0.441
53	53	0.66
54	54	0.793
55	55	0.543
56	56	0.376
57	57	0.627
58	58	0.17
59	59	0.215
6	6	0.819
60	60	0.184
61	61	0.111
62	62	0.295
63	63	0.0756
64	64	0.58
65	65	0.292
66	66	0.455
67	67	0.665
68	68	0.549
69	69	0.496
7	7	0.07
70	70	0.298
71	71	0.00331
72	72	0.378
73	73	0.07
74	74	0.534
75	75	0.296
76	76	0.938
77	77	0.16
78	78	0.335
79	79	0.0937
8	8	0.155
80	80	0.897
81	81	0.488
82	82	0.138
83	83	0.285
84	84	0.0276
85	85	0.0438
86	86	0.213
87	87	0.852
88	88	0.711
89	89	0.744
9	9	0.538
90	90	0.312
91	91	0.671
92	92	0.248
93	93	0.913
94	94	0.2
95	95	0.732
96	96	0.516
97	97	0.00954
98	98	0.901
99	99	0.352

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11136

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011267 mouse pancreas- neonate N16 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000306 (mouse neonate N16 sample)
0011267 (mouse pancreas- neonate N16 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005979
+|accession_numbers=CAGE;DRX009063;DRR009937;DRZ001362;DRZ002745;DRZ012712;DRZ014095
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.93!857.72!Rbpjl;;chr5:144951153..144951203,+!p1@Bhlha15!2.50!447.51!Bhlha15;;chr2:19367259..19367278,+!p1@Ptf1a!2.26!179.51!Ptf1a;;chr9:74709695..74709722,+!p1@Onecut1!1.77!57.83!Onecut1;;chr7:19608891..19608895,-!p1@Foxa3!1.59!48.35!Foxa3;;chr1:138857076..138857105,-!p1@Nr5a2!1.51!31.60!Nr5a2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.51!31.29!Ppard;;chr17:27865882..27865901,-!p1@Spdef!1.37!22.44!Spdef;;chr14:63864056..63864102,-!p1@Gata4!1.33!35.08!Gata4;;chr2:147871627..147871641,-!p1@Foxa2!1.27!17.70!Foxa2;;chr2:103143336..103143367,-!p1@Ehf!1.25!26.86!Ehf;;chr2:163332558..163332596,+!p2@Hnf4a!1.23!16.12!Hnf4a;;chr5:125538737..125538781,-!p2@Ncor2!1.20!53.09!Ncor2;;chr1:138857048..138857071,-!p2@Nr5a2!1.19!14.54!Nr5a2;;chr4:133109285..133109308,+!p1@Nr0b2!1.17!13.91!Nr0b2;;chr1:138857112..138857130,-!p7@Nr5a2!1.13!12.64!Nr5a2;;chr10:88969376..88969395,-!p1@Nr1h4!1.13!12.64!Nr1h4;;chr5:104121453..104121479,+!p4@Aff1!1.12!55.62!Aff1;;chr11:83664365..83664383,+!p1@Hnf1b!1.08!11.06!Hnf1b;;chr14:63890545..63890560,-!p5@Gata4!1.03!9.80!Gata4;;chr5:148081686..148081715,+!p1@Pdx1!1.02!9.48!Pdx1;;chr5:135582751..135582788,+!p1@Mlxipl!1.01!37.92!Mlxipl;;chr6:90412582..90412601,+!p1@Klf15!1.00!43.93!Klf15;;chr8:59799772..59799789,+!p1@Hand2!0.98!25.28!Hand2;;chr11:121380594..121380609,-!p2@Zfp750!0.96!14.22!Zfp750;;chr3:30408384..30408431,-!p4@Mecom!0.96!10.43!Mecom;;chr14:63890491..63890516,-!p2@Gata4!0.96!8.22!Gata4;;chr1:138846079..138846103,-!p6@Nr5a2!0.95!7.90!Nr5a2;;chr11:121380640..121380655,-!p1@Zfp750!0.93!12.64!Zfp750;;chr7:52472041..52472065,+!p2@Tead2!0.93!8.85!Tead2;;chr11:57645506..57645523,-!p1@Hand1!0.93!7.58!Hand1;;chr6:90412608..90412630,+!p2@Klf15!0.92!15.49!Klf15;;chr7:51787434..51787448,-!p1@Spib!0.92!10.75!Spib;;chr9:106362954..106362977,+!p6@Pcbp4!0.86!6.32!Pcbp4;;chr1:138846009..138846038,-!p3@Nr5a2!0.85!6.95!Nr5a2;;chr2:79296783..79296801,-!p1@Neurod1!0.85!6.00!Neurod1;;chr1:38721792..38721845,-!p1@Aff3!0.84!7.58!Aff3;;chr4:154010918..154010931,-!p1@Prdm16!0.83!18.01!Prdm16;;chr4:119486912..119486954,+!p3@Hivep3!0.83!10.43!Hivep3;;chr9:74714281..74714296,+!p5@Onecut1!0.83!5.69!Onecut1;;chr7:148513409..148513455,-!p2@Deaf1!0.82!27.81!Deaf1;;chr18:74375772..74375799,+!p2@Cxxc1!0.81!17.07!Cxxc1;;chr3:3508024..3508069,+!p2@Hnf4g!0.80!5.37!Hnf4g;;chr5:148081722..148081744,+!p2@Pdx1!0.80!5.37!Pdx1;;chr3:89197057..89197114,-!p1@Zbtb7b!0.79!18.96!Zbtb7b;;chr2:104966766..104966786,+!p1@Wt1!0.79!8.53!Wt1;;chr17:14011485..14011507,+!p2@Mllt4!0.78!5.06!Mllt4;;chr11:5420655..5420659,+!p3@Xbp1!0.78!5.06!Xbp1;;chr8:124806048..124806094,+!p1@Zfpm1!0.77!48.99!Zfpm1;;chr6:14851440..14851497,+!p2@Foxp2!0.76!12.33!Foxp2;;chr5:148081667..148081678,+!p3@Pdx1!0.76!4.74!Pdx1;;chr19:10315179..10315241,-!p1@Gm98!0.75!53.41!Gm98;;chr3:30408674..30408716,-!p2@Mecom!0.75!7.90!Mecom;;chr18:80904854..80904919,-!p2@Nfatc1!0.74!59.10!Nfatc1;;chr2:168415815..168415872,-!p1@Nfatc2!0.74!26.86!Nfatc2;;chr2:147872790..147872821,-!p2@Foxa2!0.73!4.42!Foxa2;;chr2:147871948..147871977,-!p3@Foxa2!0.73!4.42!Foxa2;;chr14:63890519..63890539,-!p3@Gata4!0.73!4.42!Gata4;;chr14:63890459..63890484,-!p4@Gata4!0.73!4.42!Gata4;;chr11:5420954..5420969,+!p2@Xbp1!0.72!60.05!Xbp1;;chr18:7004715..7004731,-!p1@Mkx!0.72!11.06!Mkx;;chr1:138845748..138845766,-!p4@Nr5a2!0.72!5.69!Nr5a2;;chr11:121380611..121380625,-!p3@Zfp750!0.72!5.37!Zfp750;;chr6:72849280..72849297,-!p6@Kcmf1!0.71!8.53!Kcmf1;;chr2:115890469..115890485,-!p7@Meis2!0.71!6.95!Meis2;;chr7:52071956..52071978,-!p1@Atf5!0.70!148.85!Atf5;;chr3:30408603..30408668,-!p1@Mecom!0.69!9.80!Mecom;;chr1:138846047..138846074,-!p5@Nr5a2!0.68!4.11!Nr5a2;;chr1:137155026..137155042,-!p1@Elf3!0.67!24.65!Elf3;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.67!6.00!Mesp2;;chr15:81633165..81633188,+!p2@Tef!0.66!33.82!Tef;;chr10:22539932..22539956,-!p1@Tcf21!0.66!10.75!Tcf21;;chr8:123608252..123608268,+!p1@Foxf1a!0.66!5.69!Foxf1a;;chr7:52471143..52471186,+!p1@Tead2!0.65!43.30!Tead2;;chr19:37509324..37509337,+!p1@Hhex!0.65!28.44!Hhex;;chr6:14851287..14851342,+!p1@Foxp2!0.65!12.96!Foxp2;;chr6:146744595..146744613,+!p2@Arntl2!0.65!6.32!Arntl2;;chr3:30039329..30039355,-!p5@Mecom!0.65!3.48!Mecom;;chr15:61817095..61817111,+!p1@Myc!0.64!235.13!Myc;;chr1:172797892..172797915,-!p1@Atf6!0.64!111.56!Atf6;;chr2:91864661..91864686,-!p1@Creb3l1!0.63!84.38!Creb3l1;;chr14:79915425..79915501,+!p1@Elf1!0.63!34.13!Elf1;;chr9:48644037..48644067,-!p2@Zbtb16!0.63!9.17!Zbtb16;;chr15:37162796..37162828,+!p1@Grhl2!0.63!6.00!Grhl2;;chr11:5420973..5420992,+!p1@Xbp1!0.62!403.58!Xbp1;;chr14:22807083..22807104,-!p1@Zfp503!0.62!67.00!Zfp503;;chr6:118429255..118429336,-!p1@Zfp9!0.62!61.63!Zfp9;;chr15:102865088..102865107,+!p1@Hoxc4!0.62!4.42!Hoxc4;;chr6:115372058..115372085,+!p3@Pparg!0.62!3.16!Pparg;;chr2:115890953..115890974,-!p6@Meis2!0.61!5.06!Meis2;;chr11:98605517..98605539,+!p5@Thra!0.61!4.74!Thra;;chr7:6649134..6649167,-!p1@Zim1!0.60!19.28!Zim1;;chr12:100802113..100802127,-!p5@Foxn3!0.60!4.11!Foxn3;;chr2:115888250..115888298,-!p10@Meis2!0.60!3.79!Meis2;;chr6:90412556..90412581,+!p3@Klf15!0.59!7.27!Klf15;;chr1:87546583..87546595,+!p1@Sp100!0.59!4.42!Sp100;;chr19:23215673..23215753,+!p1@Klf9!0.58!50.57!Klf9;;chr10:114821444..114821491,-!p1@Thap2!0.58!26.86!Thap2;;chr7:50568466..50568486,-!p2@Zfp715!0.58!8.53!Zfp715;;chr9:51021788..51021802,+!p1@Pou2af1!0.58!3.48!Pou2af1;;chr15:37162834..37162849,+!p2@Grhl2!0.58!3.48!Grhl2;;chr17:28409136..28409150,+!p3@Ppard!0.58!2.84!Ppard;;chr5:144951136..144951139,+!p2@Bhlha15!0.58!2.84!Bhlha15;;chr5:115420882..115420896,-!p3@Hnf1a!0.58!2.84!Hnf1a;;chr1:138846117..138846129,-!p8@Nr5a2!0.58!2.84!Nr5a2;;chr16:43363190..43363242,+!p2@Zbtb20!0.57!9.80!Zbtb20;;chr18:11052606..11052633,+!p4@Gata6!0.57!7.90!Gata6;;chr11:52096066..52096081,-!p2@Tcf7!0.57!3.48!Tcf7;;chr2:56976543..56976558,-!p2@Nr4a2!0.56!6.95!Nr4a2;;chr14:22807216..22807231,-!p3@Zfp503!0.56!5.06!Zfp503;;chr6:15135456..15135520,+!p3@Foxp2!0.55!6.32!Foxp2;;chr12:113917014..113917034,+!p1@Zbtb42!0.55!5.06!Zbtb42;;chr11:83664334..83664353,+!p2@Hnf1b!0.55!2.53!Hnf1b;;chr11:98407234..98407259,-!p2@Ikzf3!0.55!2.53!Ikzf3;;chr5:67490284..67490302,-!p1@Phox2b!0.55!2.53!Phox2b;;chr2:103143315..103143328,-!p2@Ehf!0.55!2.53!Ehf;;chr9:74714303..74714318,+!p2@Onecut1!0.55!2.53!Onecut1;;chr4:44723559..44723593,-!p1@Pax5!0.55!2.53!Pax5;;chr5:36826883..36826951,-!p1@Tada2b!0.54!23.39!Tada2b;;chr5:104121391..104121450,+!p3@Aff1!0.54!15.80!Aff1;;chr12:37835141..37835194,+!p1@Meox2!0.54!9.17!Meox2;;chr16:43363968..43364001,+!p7@Zbtb20!0.54!5.06!Zbtb20;;chr9:96620459..96620478,-!p9@Zbtb38!0.54!2.84!Zbtb38;;chr1:194979315..194979359,+!p1@Irf6!0.53!18.33!Irf6;;chr18:11052642..11052659,+!p1@Gata6!0.53!15.17!Gata6;;chr1:172797864..172797873,-!p2@Atf6!0.53!7.90!Atf6;;chr8:87643578..87643593,-!p1@Zfp791!0.53!5.69!Zfp791;;chr13:117099847..117099907,-!p1@Isl1!0.53!5.06!Isl1;;chr1:194979361..194979373,+!p2@Irf6!0.53!3.48!Irf6;;chr8:125897750..125897758,+!p2@Tcf25!0.52!19.91!Tcf25;;chr13:56804865..56804898,+!p3@Smad5!0.52!7.27!Smad5;;chr4:154010940..154010962,-!p3@Prdm16!0.52!6.00!Prdm16;;chr2:91077034..91077078,-!p2@Ddb2!0.52!6.00!Ddb2;;chr2:18314363..18314465,-!p1@Dnajc1!0.51!72.69!Dnajc1;;chr3:94176733..94176794,+!p1@Rorc!0.51!22.12!Rorc;;chr5:25004540..25004562,-!p3@Mll3!0.51!14.22!Mll3;;chr4:148178529..148178548,+!p3@Casz1!0.51!6.32!Casz1;;chr9:48644013..48644027,-!p5@Zbtb16!0.51!2.84!Zbtb16;;chr9:74709664..74709671,+!p6@Onecut1!0.51!2.21!Onecut1;;chr9:74709682..74709691,+!p3@Onecut1!0.51!2.21!Onecut1;;chr7:17642177..17642223,-!p3@Hif3a!0.51!2.21!Hif3a;;chr5:115421065..115421088,-!p1@Hnf1a!0.51!2.21!Hnf1a;;chr13:48758276..48758291,+!p1@Barx1!0.51!2.21!Barx1;;chr14:63864337..63864381,-!p6@Gata4!0.51!2.21!Gata4;;chr14:63890660..63890687,-!p7@Gata4!0.51!2.21!Gata4;;chr11:98407264..98407295,-!p1@Ikzf3!0.51!2.21!Ikzf3;;chr2:115890864..115890869,-!p14@Meis2!0.51!2.21!Meis2;;chr2:147012125..147012149,-!p1@Nkx2-2!0.51!2.21!Nkx2-2;;chr19:43686789..43686811,+!p1@Nkx2-3!0.51!2.21!Nkx2-3;;chr2:34227446..34227511,-!p1@Pbx3!0.50!6.00!Pbx3;;chr2:169458799..169458832,+!p5@Tshz2!0.50!4.11!Tshz2;;chr19:5560600..5560617,-!p1@Ovol1!0.50!2.84!Ovol1;;chr4:97444446..97444470,+!p3@Nfia!0.49!26.55!Nfia;;chr14:22807107..22807119,-!p2@Zfp503!0.49!11.69!Zfp503;;chr16:3872286..3872315,-!p3@Zfp597!0.49!4.74!Zfp597;;chr11:18918820..18918831,-!p4@Meis1!0.49!4.74!Meis1;;chr5:31262609..31262693,-!p1@Preb!0.48!140.64!Preb;;chr9:30838206..30838285,+!p2@Zbtb44!0.48!34.76!Zbtb44;;chr12:39507680..39507715,+!p2@Etv1!0.48!4.74!Etv1;;chr5:3647720..3647733,-!p3@Gatad1!0.48!4.42!Gatad1;;chr11:44431369..44431389,+!p8@Ebf1!0.48!2.84!Ebf1;;chr14:22808697..22808715,-!p4@Zfp503!0.48!2.53!Zfp503;;chr1:52065508..52065522,+!p2@Stat4!0.48!2.53!Stat4;;chr10:80889867..80889924,-!p1@Nfic!0.47!75.22!Nfic;;chr5:38611720..38611799,+!p1@Lyar!0.47!72.37!Lyar;;chr7:148513456..148513506,-!p1@Deaf1!0.47!41.08!Deaf1;;chr1:191994550..191994623,-!p1@Prox1!0.47!18.01!Prox1;;chr1:172797876..172797887,-!p5@Atf6!0.47!5.37!Atf6;;chr19:23215469..23215494,+!p2@Klf9!0.47!3.48!Klf9;;chr16:42907676..42907797,+!p1@Zbtb20!0.46!33.82!Zbtb20;;chr6:131338363..131338383,-!p4@Csda!0.46!11.06!Csda;;chr5:147760339..147760350,+!p3@Gtf3a!0.46!6.95!Gtf3a;;chrX:137135036..137135064,-!p4@Tsc22d3!0.46!4.42!Tsc22d3;;chr19:23215430..23215441,+!p7@Klf9!0.46!2.53!Klf9;;chr18:69681413..69681424,+!p24@Tcf4!0.46!1.90!Tcf4;;chr16:43236037..43236050,+!p35@Zbtb20!0.46!1.90!Zbtb20;;chr11:98614335..98614349,+!p8@Thra!0.46!1.90!Thra;;chr2:147012101..147012118,-!p3@Nkx2-2!0.46!1.90!Nkx2-2;;chr14:63890691..63890718,-!p8@Gata4!0.46!1.90!Gata4;;chr5:147760305..147760324,+!p2@Gtf3a!0.45!11.69!Gtf3a;;chr2:160698288..160698358,-!p3@Zhx3!0.45!7.27!Zhx3;;chr6:99216488..99216534,-!p2@Foxp1!0.45!6.64!Foxp1;;chr10:114821393..114821431,-!p5@Thap2!0.45!6.32!Thap2;;chr2:115891427..115891441,-!p4@Meis2!0.45!4.74!Meis2;;chr11:102178005..102178022,-!p8@Ubtf!0.45!3.48!Ubtf;;chr12:9581262..9581282,+!p1@Os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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011267
 |is_obsolete=
+|library_id=CNhs11136
+|library_id_phase_based=2:CNhs11136
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;787
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;787
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N16.CNhs11136.787-43B6.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N16.CNhs11136.787-43B6.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N16.CNhs11136.787-43B6.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N16.CNhs11136.787-43B6.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N16.CNhs11136.787-43B6.mm9.nobarcode.rdna.fa.gz
 |name=pancreas, neonate N16
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11136,LSID735,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.352475825945836,0,0,0,0,0.0780390110245975,0.148617510340911,0,0.0265271669621596,0,0,0.0349287792353075,0,0,0,0,0,0,-0.191893350882575,0,0,0,0.212739717419247,0,0.119268019631849,1.4196739541164,0,0,0,0,0,0,0.306131903398601,0,0,0,0,0,0.0215930896902655,-0.0354446388481378,-0.175120539051379,-0.0504770267228104,0.141782004387216,0,0,0,0,0,0,0,0,0,0,0.119268019631849,0,0.0532624720684087,0,0,0,0,0,0,0,0,0,0.0338797123016083,0.149601965887571,0.423710225982788,-0.0388230231392335,0.101730346928344,0,0,0,0,0.212739717419247,0,-0.00189759027611735,-0.0196530374008001,0.321529993105963,0.0404364247919416,0,0,0,0,0,0.119268019631849,0.162033474707546,0.456798692264654,-0.032716679346101,0,0,0,0,0
 |rna_box=43
 |rna_catalog_number=
@@ Line 61: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 81: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:787-43B6;search_select_hide=table117:787-43B6
 }}

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FF:787-43B6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:20, 4 June 2020

CNhs11136

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0