FF:777-19A2: Difference between revisions

Latest revision as of 19:20, 4 June 2020

Name:	eyeball, neonate N16
Species:	Mouse (Mus musculus)
Library ID:	CNhs11188
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	eyeball
dev stage	16 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004878

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11188		CAGE		DRX008962		DRR009836

Accession ID Mm9

Library id		BAM		CTSS
CNhs11188		DRZ001261		DRZ002644

Accession ID Mm10

Library id		BAM		CTSS
CNhs11188		DRZ012611		DRZ013994

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11188

0	0
1	0.315
10	0
100	0
1000	0.428
1001	0.537
1002	0.38
1003	0.145
1004	0
1005	0
1006	0.524
1007	0.0262
1008	0
1009	0.0594
101	-0.0531
1010	0
1011	0.142
1012	0.249
1013	0.21
1014	-0.0874
1015	-0.223
1016	-0.128
1017	0
1018	0.0999
1019	0.826
102	0
1020	0
1021	0
1022	0.415
1023	0
1024	0.0534
1025	0
1026	0
1027	0.359
1028	0
1029	0.632
103	0.309
1030	0
1031	0.122
1032	0.0362
1033	0.0683
1034	0.0137
1035	0
1036	-0.102
1037	0.873
1038	0.118
1039	0.184
104	0
1040	0.0594
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11188

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0432
MA0003.1	MA0003.1	0.925
MA0004.1	MA0004.1	0.0591
MA0006.1	MA0006.1	0.497
MA0007.1	MA0007.1	0.376
MA0009.1	MA0009.1	0.439
MA0014.1	MA0014.1	0.193
MA0017.1	MA0017.1	4.23705e-5
MA0018.2	MA0018.2	0.224
MA0019.1	MA0019.1	0.591
MA0024.1	MA0024.1	1.29563e-4
MA0025.1	MA0025.1	0.202
MA0027.1	MA0027.1	0.0712
MA0028.1	MA0028.1	1.09633e-6
MA0029.1	MA0029.1	0.635
MA0030.1	MA0030.1	0.84
MA0031.1	MA0031.1	0.431
MA0035.2	MA0035.2	0.194
MA0038.1	MA0038.1	0.085
MA0039.2	MA0039.2	0.001
MA0040.1	MA0040.1	0.0944
MA0041.1	MA0041.1	0.366
MA0042.1	MA0042.1	0.857
MA0043.1	MA0043.1	0.0726
MA0046.1	MA0046.1	3.42394e-20
MA0047.2	MA0047.2	0.0355
MA0048.1	MA0048.1	0.00268
MA0050.1	MA0050.1	0.0014
MA0051.1	MA0051.1	0.00222
MA0052.1	MA0052.1	3.02831e-5
MA0055.1	MA0055.1	1.0938e-4
MA0057.1	MA0057.1	0.592
MA0058.1	MA0058.1	0.0443
MA0059.1	MA0059.1	0.0094
MA0060.1	MA0060.1	0.00518
MA0061.1	MA0061.1	0.00141
MA0062.2	MA0062.2	1.54222e-14
MA0065.2	MA0065.2	0.0142
MA0066.1	MA0066.1	0.508
MA0067.1	MA0067.1	0.899
MA0068.1	MA0068.1	0.253
MA0069.1	MA0069.1	0.124
MA0070.1	MA0070.1	0.624
MA0071.1	MA0071.1	0.0348
MA0072.1	MA0072.1	1.83047e-7
MA0073.1	MA0073.1	0.87
MA0074.1	MA0074.1	0.141
MA0076.1	MA0076.1	1.01701e-7
MA0077.1	MA0077.1	0.866
MA0078.1	MA0078.1	0.0579
MA0079.2	MA0079.2	0.633
MA0080.2	MA0080.2	5.31992e-12
MA0081.1	MA0081.1	5.65111e-4
MA0083.1	MA0083.1	0.497
MA0084.1	MA0084.1	0.545
MA0087.1	MA0087.1	0.174
MA0088.1	MA0088.1	0.322
MA0090.1	MA0090.1	0.724
MA0091.1	MA0091.1	0.0789
MA0092.1	MA0092.1	0.658
MA0093.1	MA0093.1	0.0755
MA0099.2	MA0099.2	0.00947
MA0100.1	MA0100.1	0.00654
MA0101.1	MA0101.1	4.79221e-4
MA0102.2	MA0102.2	0.143
MA0103.1	MA0103.1	0.783
MA0104.2	MA0104.2	0.156
MA0105.1	MA0105.1	0.00223
MA0106.1	MA0106.1	0.298
MA0107.1	MA0107.1	0.00676
MA0108.2	MA0108.2	0.5
MA0111.1	MA0111.1	0.426
MA0112.2	MA0112.2	0.172
MA0113.1	MA0113.1	0.0545
MA0114.1	MA0114.1	5.36783e-5
MA0115.1	MA0115.1	7.17512e-4
MA0116.1	MA0116.1	0.178
MA0117.1	MA0117.1	0.831
MA0119.1	MA0119.1	0.997
MA0122.1	MA0122.1	0.413
MA0124.1	MA0124.1	0.897
MA0125.1	MA0125.1	0.0491
MA0131.1	MA0131.1	0.291
MA0135.1	MA0135.1	0.637
MA0136.1	MA0136.1	2.96964e-22
MA0137.2	MA0137.2	0.00295
MA0138.2	MA0138.2	2.88863e-5
MA0139.1	MA0139.1	0.368
MA0140.1	MA0140.1	0.113
MA0141.1	MA0141.1	0.147
MA0142.1	MA0142.1	0.521
MA0143.1	MA0143.1	0.457
MA0144.1	MA0144.1	0.0025
MA0145.1	MA0145.1	1
MA0146.1	MA0146.1	0.0486
MA0147.1	MA0147.1	0.0601
MA0148.1	MA0148.1	0.00632
MA0149.1	MA0149.1	0.328
MA0150.1	MA0150.1	0.905
MA0152.1	MA0152.1	0.93
MA0153.1	MA0153.1	6.50512e-19
MA0154.1	MA0154.1	0.203
MA0155.1	MA0155.1	0.746
MA0156.1	MA0156.1	4.28237e-18
MA0157.1	MA0157.1	0.124
MA0159.1	MA0159.1	0.175
MA0160.1	MA0160.1	0.509
MA0162.1	MA0162.1	0.549
MA0163.1	MA0163.1	6.14381e-4
MA0164.1	MA0164.1	0.851
MA0258.1	MA0258.1	0.578
MA0259.1	MA0259.1	0.361

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11188

Novel motif	Logo	P-value
1	1	0.981
10	10	0.213
100	100	0.96
101	101	0.702
102	102	0.866
103	103	0.636
104	104	0.877
105	105	0.918
106	106	0.65
107	107	0.638
108	108	0.631
109	109	0.16
11	11	0.216
110	110	0.135
111	111	0.0633
112	112	0.186
113	113	0.229
114	114	0.85
115	115	0.891
116	116	0.298
117	117	7.59083e-4
118	118	0.00494
119	119	0.57
12	12	0.154
120	120	0.492
121	121	0.885
122	122	0.49
123	123	0.019
124	124	0.194
125	125	0.677
126	126	0.16
127	127	0.699
128	128	0.919
129	129	0.884
13	13	1.1698e-6
130	130	0.295
131	131	0.303
132	132	0.831
133	133	0.881
134	134	0.786
135	135	0.557
136	136	0.00119
137	137	0.791
138	138	0.0499
139	139	0.567
14	14	0.159
140	140	0.67
141	141	0.763
142	142	0.82
143	143	0.0973
144	144	0.97
145	145	0.0254
146	146	0.818
147	147	0.705
148	148	0.811
149	149	0.713
15	15	0.131
150	150	0.0635
151	151	0.406
152	152	0.0285
153	153	0.92
154	154	0.537
155	155	0.163
156	156	0.846
157	157	0.466
158	158	0.983
159	159	0.176
160	160	0.991
161	161	0.215
162	162	0.974
163	163	0.953
164	164	6.93209e-4
165	165	0.0934
166	166	0.696
167	167	0.852
168	168	0.59
169	169	0.0413
17	17	0.451
18	18	0.694
19	19	0.906
2	2	0.193
20	20	0.00104
21	21	0.165
22	22	0.597
23	23	0.226
24	24	0.0398
25	25	0.353
26	26	3.37492e-4
27	27	0.465
28	28	0.826
29	29	0.00142
3	3	0.2
30	30	0.521
31	31	0.658
32	32	0.584
33	33	0.038
34	34	0.766
35	35	0.649
36	36	0.279
37	37	0.0745
38	38	0.453
39	39	0.536
4	4	0.547
40	40	0.285
41	41	0.321
42	42	0.224
43	43	0.668
44	44	0.631
45	45	0.897
46	46	0.445
47	47	0.722
48	48	0.396
49	49	0.744
5	5	0.299
50	50	0.592
51	51	0.822
52	52	0.973
53	53	0.0483
54	54	0.342
55	55	0.202
56	56	0.967
57	57	0.851
58	58	0.602
59	59	0.109
6	6	0.871
60	60	0.19
61	61	0.0778
62	62	0.509
63	63	0.419
64	64	0.915
65	65	0.609
66	66	0.828
67	67	0.415
68	68	0.327
69	69	0.271
7	7	0.101
70	70	0.842
71	71	0.00949
72	72	0.359
73	73	0.0012
74	74	0.406
75	75	0.0132
76	76	0.0666
77	77	0.981
78	78	0.0122
79	79	0.906
8	8	0.0498
80	80	0.591
81	81	0.316
82	82	0.92
83	83	0.199
84	84	0.768
85	85	0.931
86	86	0.225
87	87	0.00248
88	88	0.462
89	89	0.609
9	9	0.759
90	90	0.696
91	91	0.836
92	92	0.942
93	93	0.501
94	94	0.722
95	95	0.00261
96	96	0.768
97	97	0.961
98	98	0.396
99	99	0.628

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11188

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011423 mouse eyeball- neonate N16 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0004456 (entire sense organ system)
0001456 (face)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000306 (mouse neonate N16 sample)
0011423 (mouse eyeball- neonate N16 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000970,UBERON:0001032,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0002104,UBERON:0004456
+|DRA_sample_Accession=CAGE@SAMD00004878
+|accession_numbers=CAGE;DRX008962;DRR009836;DRZ001261;DRZ002644;DRZ012611;DRZ013994
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0004456,UBERON:0001456
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000306,FF:0011423
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:16465229..16465249,-!p1@Crx!2.96!920.47!Crx;;chr9:59797875..59797929,-!p1@Nr2e3!2.47!295.70!Nr2e3;;chr2:79296783..79296801,-!p1@Neurod1!2.46!287.42!Neurod1;;chr10:76285563..76285576,-!p2@Pcbp3!2.19!154.96!Pcbp3;;chr10:129717274..129717298,-!p1@Neurod4!2.10!125.47!Neurod4;;chr14:56143046..56143060,-!p1@Nrl!2.09!122.63!Nrl;;chr14:49287186..49287225,-!p1@Otx2!2.03!107.10!Otx2;;chr12:87762578..87762612,+!p1@Esrrb!1.97!93.39!Esrrb;;chr2:105509045..105509071,+!p1@Pax6!1.93!84.08!Pax6;;chr10:76279462..76279479,-!p3@Pcbp3!1.86!71.14!Pcbp3;;chr19:19185671..19185693,-!p1@Rorb!1.85!160.14!Rorb;;chr15:103164702..103164778,-!p3@Zfp385a!1.75!64.93!Zfp385a;;chr2:103264213..103264233,+!p1@Elf5!1.72!51.74!Elf5;;chr18:66098702..66098742,-!p1@Rax!1.72!51.22!Rax;;chr14:56143775..56143804,-!p2@Nrl!1.70!49.67!Nrl;;chr19:19075589..19075609,-!p4@Rorb!1.67!46.31!Rorb;;chr1:19199236..19199258,+!p1@Tfap2b!1.64!42.17!Tfap2b;;chr5:98609885..98609900,+!p1@Prdm8!1.62!40.88!Prdm8;;chr11:21901608..21901634,-!p1@Otx1!1.60!39.06!Otx1;;chr3:101814061..101814094,+!p1@Nhlh2!1.54!33.37!Nhlh2;;chr2:105522662..105522687,+!p2@Pax6!1.53!32.60!Pax6;;chr1:189821714..189821761,+!p1@Esrrg!1.52!57.95!Esrrg;;chr13:72101178..72101203,-!p1@Irx1!1.44!40.62!Irx1;;chr2:103264245..103264268,+!p2@Elf5!1.43!26.13!Elf5;;chr2:77654815..77654872,-!p2@Zfp385b!1.39!28.97!Zfp385b;;chr13:40829137..40829205,-!p1@Tfap2a!1.38!25.61!Tfap2a;;chr2:105515793..105515808,+!p3@Pax6!1.38!23.02!Pax6;;chr4:148263504..148263553,+!p10@Casz1!1.37!22.51!Casz1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.36!40.88!Tsc22d4;;chr3:99057269..99057306,+!p1@Tbx15!1.36!26.39!Tbx15;;chr17:86020510..86020589,+!p3@Six3!1.33!20.44!Six3;;chr4:148178529..148178548,+!p3@Casz1!1.32!46.57!Casz1;;chr12:30219426..30219506,+!p2@Myt1l!1.32!19.66!Myt1l;;chr13:72766250..72766273,+!p1@Irx2!1.31!29.75!Irx2;;chr13:117099847..117099907,-!p1@Isl1!1.30!34.67!Isl1;;chr12:85910771..85910785,+!p1@Vsx2!1.29!18.37!Vsx2;;chr10:67375146..67375208,-!p2@Zfp365!1.28!27.68!Zfp365;;chr12:87762625..87762637,+!p7@Esrrb!1.26!17.33!Esrrb;;chr1:19199095..19199114,+!p5@Tfap2b!1.26!17.33!Tfap2b;;chr6:83661226..83661282,+!p1@Vax2!1.26!17.07!Vax2;;chr2:103143336..103143367,-!p1@Ehf!1.24!26.13!Ehf;;chr15:78994907..78994926,-!p1@Sox10!1.21!39.06!Sox10;;chr8:12395603..12395621,+!p1@Sox1!1.21!15.26!Sox1;;chr4:148263454..148263472,+!p11@Casz1!1.21!15.26!Casz1;;chr4:148178559..148178603,+!p1@Casz1!1.20!41.91!Casz1;;chr6:145814003..145814056,-!p1@Bhlhe41!1.19!41.13!Bhlhe41;;chr11:121380640..121380655,-!p1@Zfp750!1.19!24.06!Zfp750;;chr16:91270004..91270023,+!p1@Olig1!1.18!16.30!Olig1;;chr13:83712735..83712761,+!p9@Mef2c!1.18!14.23!Mef2c;;chr13:72101161..72101177,-!p2@Irx1!1.17!19.14!Irx1;;chr14:18493480..18493494,+!p2@Thrb!1.17!15.26!Thrb;;chr14:56143103..56143107,-!p4@Nrl!1.17!13.71!Nrl;;chr14:18493386..18493464,+!p1@Thrb!1.15!49.41!Thrb;;chr8:24780125..24780143,+!p1@Zmat4!1.15!18.89!Zmat4;;chr2:38206744..38206766,+!p1@Lhx2!1.15!15.78!Lhx2;;chr11:98636531..98636559,-!p1@Nr1d1!1.14!72.95!Nr1d1;;chr2:172375081..172375105,+!p1@Tfap2c!1.14!12.94!Tfap2c;;chr12:87762732..87762747,+!p9@Esrrb!1.14!12.94!Esrrb;;chr10:129717308..129717319,-!p2@Neurod4!1.13!12.42!Neurod4;;chr11:21901587..21901604,-!p2@Otx1!1.13!12.42!Otx1;;chr7:116154364..116154444,+!p1@Tub!1.12!21.21!Tub;;chr7:38558574..38558611,-!p2@Zfp536!1.12!15.26!Zfp536;;chr10:67364011..67364018,-!p5@Zfp365!1.12!12.16!Zfp365;;chr13:40825465..40825469,-!p2@Tfap2a!1.12!12.16!Tfap2a;;chr9:69137716..69137744,+!p1@Rora!1.10!72.18!Rora;;chr1:137155026..137155042,-!p1@Elf3!1.10!67.52!Elf3;;chr17:86020156..86020183,+!p1@Six3!1.10!11.64!Six3;;chr8:107793737..107793757,+!p2@Hsf4!1.08!12.68!Hsf4;;chr14:56143812..56143822,-!p5@Nrl!1.08!11.12!Nrl;;chr11:90252223..90252240,-!p1@Hlf!1.07!90.55!Hlf;;chr1:6720216..6720232,+!p1@St18!1.07!10.87!St18;;chr14:49287107..49287125,-!p3@Otx2!1.07!10.87!Otx2;;chr2:146047829..146047847,+!p1@Insm1!1.06!18.89!Insm1;;chr1:19199021..19199048,+!p8@Tfap2b!1.06!10.61!Tfap2b;;chr9:59797847..59797858,-!p5@Nr2e3!1.06!10.61!Nr2e3;;chr14:56143753..56143767,-!p3@Nrl!1.06!10.61!Nrl;;chr1:19202352..19202354,+!p2@Tfap2b!1.05!10.35!Tfap2b;;chr2:150514750..150514756,-!p1@Vsx1!1.05!10.35!Vsx1;;chr18:36441119..36441158,+!p2@Pura!1.04!24.32!Pura;;chr2:65683890..65683907,+!p1@Csrnp3!1.04!19.14!Csrnp3;;chr17:48015839..48015915,-!p3@Foxp4!1.04!11.90!Foxp4;;chr7:38558544..38558566,-!p4@Zfp536!1.04!11.38!Zfp536;;chr1:19199079..19199092,+!p7@Tfap2b!1.04!10.09!Tfap2b;;chr7:52960555..52960662,+!p1@Dbp!1.03!84.60!Dbp;;chr4:153708892..153708904,-!p13@Prdm16!1.03!9.83!Prdm16;;chr11:78317000..78317005,+!p1@Sebox!1.02!9.57!Sebox;;chr1:191994700..191994711,-!p4@Prox1!1.02!9.57!Prox1;;chr2:38206580..38206600,+!p2@Lhx2!1.01!11.38!Lhx2;;chr15:103170533..103170556,-!p1@Zfp385a!1.00!33.89!Zfp385a;;chr5:77543897..77543911,-!p2@Hopx!1.00!17.59!Hopx;;chr17:48015645..48015689,-!p9@Foxp4!1.00!11.64!Foxp4;;chr1:19199119..19199134,+!p4@Tfap2b!1.00!9.05!Tfap2b;;chr4:97248607..97248649,+!p15@Nfia!1.00!9.05!Nfia;;chr14:104867201..104867258,-!p1@Pou4f1!0.99!12.42!Pou4f1;;chr12:74040861..74040875,+!p1@Six6!0.99!8.80!Six6;;chr14:56143826..56143833,-!p6@Nrl!0.99!8.80!Nrl;;chr4:114598669..114598674,-!p1@Foxe3!0.99!8.80!Foxe3;;chr2:181501710..181501742,+!p2@Myt1!0.99!8.80!Myt1;;chr17:86020115..86020128,+!p2@Six3!0.99!8.80!Six3;;chr19:19185697..19185711,-!p2@Rorb!0.98!11.12!Rorb;;chr11:121380611..121380625,-!p3@Zfp750!0.98!10.61!Zfp750;;chr2:105509100..105509107,+!p6@Pax6!0.98!8.54!Pax6;;chr12:74040895..74040916,+!p2@Six6!0.98!8.54!Six6;;chr16:91225808..91225824,+!p1@Olig2!0.98!8.54!Olig2;;chr17:86012772..86012825,+!p4@Six3!0.97!8.28!Six3;;chr1:19199221..19199234,+!p6@Tfap2b!0.97!8.28!Tfap2b;;chr14:49284773..49284790,-!p2@Otx2!0.97!8.28!Otx2;;chr9:106356211..106356242,+!p1@Pcbp4!0.96!164.28!Pcbp4;;chr15:76353005..76353021,-!p2@Scrt1!0.96!8.02!Scrt1;;chr14:34791937..34791977,-!p1@Zfp488!0.96!8.02!Zfp488;;chr13:83643159..83643226,+!p3@Mef2c!0.96!8.02!Mef2c;;chr14:18493470..18493477,+!p4@Thrb!0.96!8.02!Thrb;;chr2:163051181..163051205,+!p2@Tox2!0.96!8.02!Tox2;;chr2:103264277..103264292,+!p3@Elf5!0.96!8.02!Elf5;;chr12:84828663..84828679,-!p1@Dpf3!0.95!62.35!Dpf3;;chr14:19071466..19071550,-!p1@Nr1d2!0.94!54.85!Nr1d2;;chr15:103170516..103170531,-!p2@Zfp385a!0.94!18.89!Zfp385a;;chr13:40826150..40826167,-!p3@Tfap2a!0.94!8.54!Tfap2a;;chr2:81893535..81893548,+!p1@Zfp804a!0.94!7.76!Zfp804a;;chr4:97248473..97248496,+!p16@Nfia!0.94!7.76!Nfia;;chr2:181501745..181501778,+!p1@Myt1!0.94!7.76!Myt1;;chr2:103143315..103143328,-!p2@Ehf!0.93!7.50!Ehf;;chr2:105515635..105515661,+!p5@Pax6!0.93!7.50!Pax6;;chr4:97248652..97248671,+!p19@Nfia!0.93!7.50!Nfia;;chr11:101755669..101755686,-!p1@Meox1!0.92!13.45!Meox1;;chr13:72766279..72766296,+!p2@Irx2!0.92!11.12!Irx2;;chr15:103170561..103170572,-!p4@Zfp385a!0.92!10.87!Zfp385a;;chr11:90252071..90252093,-!p7@Hlf!0.92!7.24!Hlf;;chr1:19199064..19199075,+!p10@Tfap2b!0.92!7.24!Tfap2b;;chr15:81633165..81633188,+!p2@Tef!0.90!59.24!Tef;;chr18:11052485..11052508,+!p2@Gata6!0.90!20.18!Gata6;;chr2:120365588..120365602,-!p2@Zfp106!0.90!11.90!Zfp106;;chr4:150482353..150482386,-!p6@Camta1!0.90!6.98!Camta1;;chr3:128916868..128916890,+!p1@Pitx2!0.89!9.57!Pitx2;;chr2:77654650..77654685,-!p3@Zfp385b!0.89!8.80!Zfp385b;;chr4:150482563..150482655,-!p2@Camta1!0.88!24.58!Camta1;;chr4:148275237..148275311,+!p2@Casz1!0.87!27.68!Casz1;;chr17:14011485..14011507,+!p2@Mllt4!0.87!6.47!Mllt4;;chr11:90251852..90251855,-!p4@Hlf!0.86!7.76!Hlf;;chr2:77654793..77654805,-!p7@Zfp385b!0.86!6.21!Zfp385b;;chr9:91260594..91260612,-!p1@Zic1!0.86!6.21!Zic1;;chr16:25801993..25802014,+!p1@Trp63!0.84!5.95!Trp63;;chr9:69137672..69137702,+!p2@Rora!0.82!25.35!Rora;;chr2:127347067..127347093,-!p1@Kcnip3!0.82!9.83!Kcnip3;;chr11:98789140..98789168,+!p5@Rara!0.82!9.31!Rara;;chr1:191994550..191994623,-!p1@Prox1!0.81!40.62!Prox1;;chr7:148008023..148008092,-!p1@Zfp941!0.81!13.97!Zfp941;;chr7:38557752..38557793,-!p3@Zfp536!0.81!6.47!Zfp536;;chr6:97941770..97941784,+!p4@Mitf!0.81!5.43!Mitf;;chr11:90252108..90252134,-!p6@Hlf!0.81!5.43!Hlf;;chr1:189821700..189821713,+!p4@Esrrg!0.81!5.43!Esrrg;;chr19:46222859..46222876,-!p1@Pitx3!0.81!5.43!Pitx3;;chr4:21612929..21612952,-!p1@Prdm13!0.81!5.43!Prdm13;;chr7:52960700..52960719,+!p2@Dbp!0.80!6.73!Dbp;;chr4:54960870..54960926,+!p1@Zfp462!0.79!19.92!Zfp462;;chr11:121380594..121380609,-!p2@Zfp750!0.79!9.31!Zfp750;;chr11:90250944..90250982,-!p2@Hlf!0.79!9.05!Hlf;;chr15:76352677..76352737,-!p3@Scrt1!0.79!5.17!Scrt1;;chr12:87762617..87762622,+!p13@Esrrb!0.79!5.17!Esrrb;;chr2:77541432..77541474,-!p5@Zfp385b!0.79!5.17!Zfp385b;;chr5:104183219..104183236,+!p2@Aff1!0.78!36.99!Aff1;;chr7:38554763..38554780,-!p1@Zfp536!0.78!9.57!Zfp536;;chr7:130644017..130644092,-!p1@Zkscan2!0.77!10.09!Zkscan2;;chr5:122499831..122499891,-!p1@Cux2!0.77!7.76!Cux2;;chr19:23215554..23215567,+!p5@Klf9!0.77!6.98!Klf9;;chr8:107793688..107793736,+!p1@Hsf4!0.77!6.47!Hsf4;;chr9:24578720..24578735,-!p1@Tbx20!0.77!4.92!Tbx20;;chr2:77654767..77654784,-!p12@Zfp385b!0.77!4.92!Zfp385b;;chr17:25707623..25707639,-!p1@Sox8!0.76!22.25!Sox8;;chr5:125342568..125342602,+!p2@Zfp664!0.75!8.02!Zfp664;;chr9:31720843..31720888,-!p1@Barx2!0.75!5.17!Barx2;;chr4:82351566..82351607,-!p10@Nfib!0.75!4.66!Nfib;;chr18:66098673..66098684,-!p2@Rax!0.75!4.66!Rax;;chr14:122874619..122874634,+!p1@Zic2!0.75!4.66!Zic2;;chr5:104121453..104121479,+!p4@Aff1!0.74!22.51!Aff1;;chr3:89197057..89197114,-!p1@Zbtb7b!0.74!16.56!Zbtb7b;;chr3:5218629..5218684,+!p1@Zfhx4!0.74!16.04!Zfhx4;;chr2:77654936..77654988,-!p4@Zfp385b!0.74!5.69!Zfp385b;;chr11:98636508..98636524,-!p3@Nr1d1!0.74!5.69!Nr1d1;;chr14:98568971..98569025,-!p1@Dach1!0.73!37.25!Dach1;;chr11:100683839..100683890,-!p2@Stat5b!0.73!11.12!Stat5b;;chr6:145813905..145813932,-!p2@Bhlhe41!0.73!8.80!Bhlhe41;;chr3:99057256..99057268,+!p3@Tbx15!0.73!4.40!Tbx15;;chr13:40829337..40829360,-!p5@Tfap2a!0.73!4.40!Tfap2a;;chr16:43363190..43363242,+!p2@Zbtb20!0.72!14.49!Zbtb20;;chr18:83080278..83080293,+!p5@Zfp516!0.72!10.61!Zfp516;;chr13:721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Tbx2;;chr12:34642510..34642530,+!p1@Twist1!0.57!10.09!Twist1;;chr16:43363152..43363186,+!p3@Zbtb20!0.57!7.24!Zbtb20;;chr4:118846454..118846506,-!p2@Zfp691!0.57!7.24!Zfp691;;chr16:43619057..43619078,+!p8@Zbtb20!0.57!6.47!Zbtb20;;chr10:62328079..62328093,-!p5@Tet1!0.57!4.14!Tet1;;chr18:14131126..14131211,-!p1@Zfp521!0.56!69.07!Zfp521;;chr16:23988711..23988727,-!p1@Bcl6!0.56!39.06!Bcl6;;chr8:112603610..112603656,+!p1@Zfp612!0.56!14.75!Zfp612;;chr17:87153440..87153451,+!p4@Epas1!0.56!6.21!Epas1;;chr7:120351014..120351109,+!p1@Arntl!0.55!43.98!Arntl;;chr7:6124098..6124133,+!p1@Zfp444!0.55!14.23!Zfp444;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.55!12.16!Ppp1r13l;;chr18:83080255..83080277,+!p4@Zfp516!0.55!7.50!Zfp516;;chr17:15701263..15701277,-!p2@Prdm9!0.55!7.24!Prdm9;;chr12:74147689..74147711,-!p1@Six1!0.55!6.47!Six1;;chr19:23216166..23216191,+!p6@Klf9!0.55!3.62!Klf9;;chr18:66098752..66098757,-!p3@Rax!0.55!2.59!Rax;;chr12:74040716..74040745,+!p3@Six6!0.55!2.59!Six6;;chr13:40824310..40824314,-!p6@Tfap2a!0.55!2.59!Tfap2a;;chr12:30213247..30213333,+!p1@Myt1l!0.55!2.59!Myt1l;;chr14:18814147..18814153,+!p5@Thrb!0.55!2.59!Thrb;;chr2:181501988..181502026,+!p3@Myt1!0.55!2.59!Myt1;;chr7:38557887..38557910,-!p5@Zfp536!0.55!2.59!Zfp536;;chr9:59797133..59797145,-!p7@Nr2e3!0.55!2.59!Nr2e3;;chr11:100553754..100553787,-!p1@Zfp385c!0.55!2.59!Zfp385c;;chr2:79296907..79296918,-!p2@Neurod1!0.55!2.59!Neurod1;;chr3:101814037..101814046,+!p2@Nhlh2!0.55!2.59!Nhlh2;;chr7:30644985..30645072,+!p1@Zfp420!0.54!18.11!Zfp420;;chr6:145813964..145813994,-!p3@Bhlhe41!0.54!3.36!Bhlhe41;;chr7:144505980..144506010,-!p3@Ebf3!0.54!3.10!Ebf3;;chr12:86939657..86939685,+!p6@Jdp2!0.54!3.10!Jdp2;;chr4:61869460..61869521,-!p1@Zfp37!0.53!15.78!Zfp37;;chr18:5334362..5334408,-!p1@Zfp438!0.53!12.42!Zfp438;;chr11:69579401..69579427,+!p2@Zbtb4!0.53!11.38!Zbtb4;;chr12:3806536..3806571,+!p3@Dnmt3a!0.53!10.61!Dnmt3a;;chr6:115310872..115310899,+!p2@Pparg!0.53!4.66!Pparg;;chr12:72149325..72149343,+!p2@Arid4a!0.53!3.62!Arid4a;;chr9:122812356..122812381,+!p@chr9:122812356..122812381,+!0.52!5.17!Gm8008;;chr11:62602947..62602980,-!p2@Zfp286!0.52!5.17!Zfp286;;chr10:62328047..62328076,-!p3@Tet1!0.52!3.88!Tet1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!0.52!3.10!Pou3f3;;chr19:23215509..23215523,+!p4@Klf9!0.52!3.10!Klf9;;chr19:19075560..19075565,-!p6@Rorb!0.52!2.33!Rorb;;chr19:5560570..5560582,-!p2@Ovol1!0.52!2.33!Ovol1;;chr13:83643136..83643158,+!p7@Mef2c!0.52!2.33!Mef2c;;chr5:75471615..75471622,+!p1@Gsx2!0.52!2.33!Gsx2;;chr2:81893447..81893468,+!p2@Zfp804a!0.52!2.33!Zfp804a;;chr3:128902837..128902861,+!p3@Pitx2!0.52!2.33!Pitx2;;chr2:77541362..77541382,-!p8@Zfp385b!0.52!2.33!Zfp385b;;chr3:99044284..99044308,+!p4@Tbx15!0.52!2.33!Tbx15;;chr3:99057677..99057730,+!p2@Tbx15!0.52!2.33!Tbx15;;chrX:34442842..34442866,-!p3@Nkrf!0.52!2.33!Nkrf;;chr1:19199193..19199207,+!p11@Tfap2b!0.52!2.33!Tfap2b;;chr2:168427068..168427115,-!p3@Nfatc2!0.52!2.33!Nfatc2;;chr9:118387300..118387317,+!p1@Eomes!0.52!2.33!Eomes;;chr8:118231705..118231722,-!p3@Maf!0.51!22.77!Maf;;chr11:98789099..98789124,+!p3@Rara!0.51!8.54!Rara;;chr2:77357622..77357704,-!p1@Zfp385b!0.51!7.24!Zfp385b;;chr16:42907554..42907591,+!p5@Zbtb20!0.51!6.73!Zbtb20;;chr12:119539732..119539762,-!p3@Sp4!0.51!5.95!Sp4;;chr9:68501522..68501538,+!p4@Rora!0.51!4.92!Rora;;chr19:9017011..9017032,+!p4@Mta2!0.51!4.14!Mta2;;chr1:136456791..136456810,+!p1@Kdm5b!0.50!101.93!Kdm5b;;chr11:97524509..97524595,+!p1@Mllt6!0.50!33.63!Mllt6;;chr5:135582751..135582788,+!p1@Mlxipl!0.50!10.87!Mlxipl;;chr13:31898729..31898761,+!p1@Foxc1!0.50!6.47!Foxc1;;chr4:135129538..135129558,-!p1@Grhl3!0.50!3.62!Grhl3;;chr5:104121391..104121450,+!p3@Aff1!0.49!13.97!Aff1;;chr12:75008946..75008957,+!p2@Hif1a!0.49!13.71!Hif1a;;chr9:68501568..68501592,+!p3@Rora!0.49!5.69!Rora;;chr16:43363968..43364001,+!p7@Zbtb20!0.49!4.40!Zbtb20;;chr13:31898637..31898653,+!p2@Foxc1!0.49!4.40!Foxc1;;chr16:43364215..43364252,+!p14@Zbtb20!0.49!2.85!Zbtb20;;chr17:86020186..86020195,+!p9@Six3!0.49!2.07!Six3;;chr16:91270091..91270143,+!p2@Olig1!0.49!2.07!Olig1;;chr7:119885539..119885574,+!p3@Tead1!0.49!2.07!Tead1;;chr11:84339016..84339044,-!p1@Lhx1!0.49!2.07!Lhx1;;chr3:17954233..17954249,+!p1@Bhlhe22!0.49!2.07!Bhlhe22;;chr3:89191054..89191070,-!p5@Zbtb7b!0.49!2.07!Zbtb7b;;chr12:3806003..3806031,+!p11@Dnmt3a!0.49!2.07!Dnmt3a;;chr12:75002389..75002406,+!p4@Hif1a!0.49!2.07!Hif1a;;chr2:151907338..151907360,+!p2@Scrt2!0.49!2.07!Scrt2;;chr1:169548377..169548430,+!p1@Rxrg!0.49!2.07!Rxrg;;chr7:13563183..13563249,+!p1@Zfp446!0.48!18.89!Zfp446;;chr14:98568761..98568814,-!p2@Dach1!0.48!18.11!Dach1;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.48!7.24!Tfcp2l1;;chr2:166888481..166888548,-!p3@Znfx1!0.48!6.73!Znfx1;;chr16:43363837..43363842,+!p11@Zbtb20!0.48!4.40!Zbtb20;;chr15:85566184..85566238,+!p1@Ppara!0.48!3.36!Ppara;;chr13:53568104..53568156,-!p1@Msx2!0.48!3.36!Msx2;;chr3:5218516..5218544,+!p2@Zfhx4!0.48!3.36!Zfhx4;;chr13:44826694..44826710,+!p3@Jarid2!0.47!28.97!Jarid2;;chr19:26679615..26679646,+!p3@Smarca2!0.47!18.11!Smarca2;;chr17:34730333..34730362,+!p2@Pbx2!0.47!10.09!Pbx2;;chr8:94325814..94325839,-!p2@Irx3!0.47!4.92!Irx3;;chr9:96619968..96619983,-!p6@Zbtb38!0.47!3.88!Zbtb38;;chr19:59533221..59533271,+!p1@Emx2!0.47!2.59!Emx2;;chr7:144505957..144505972,-!p2@Ebf3!0.47!2.59!Ebf3;;chr15:81641878..81641921,+!p1@Tef!0.46!67.26!Tef;;chr19:23215673..23215753,+!p1@Klf9!0.46!37.77!Klf9;;chr7:48888915..48888973,+!p1@Zfp788!0.46!32.34!Zfp788;;chr6:14851287..14851342,+!p1@Foxp2!0.46!8.02!Foxp2;;chr18:83080305..83080335,+!p2@Zfp516!0.46!7.50!Zfp516;;chr15:35225845..35225867,+!p1@Osr2!0.46!5.95!Osr2;;chr11:50745114..50745144,-!p1@Zfp354b!0.46!5.95!Zfp354b;;chr2:91077034..91077078,-!p2@Ddb2!0.46!5.17!Ddb2;;chr4:13712228..13712267,+!p3@Runx1t1!0.46!3.88!Runx1t1;;chr12:3807076..3807086,+!p8@Dnmt3a!0.46!3.88!Dnmt3a;;chr8:90328310..90328362,-!p3@Zfp423!0.46!2.33!Zfp423;;chr17:87153028..87153049,+!p2@Epas1!0.45!53.03!Epas1;;chr9:96619823..96619898,-!p2@Zbtb38!0.45!10.87!Zbtb38;;chr2:163028808..163028869,+!p1@Tox2!0.45!8.54!Tox2;;chr7:4947724..4947743,-!p3@Zfp579!0.45!5.17!Zfp579;;chr19:26679596..26679607,+!p8@Smarca2!0.45!4.66!Smarca2;;chr1:69732511..69732540,-!p2@Ikzf2!0.45!2.59!Ikzf2;;chr3:95032515..95032553,-!p5@Mllt11!0.45!2.33!Mllt11;;chr7:122968213..122968266,-!p4@Sox6!0.45!2.33!Sox6;;chr12:54349410..54349461,+!p1@Npas3!0.45!2.33!Npas3;;chr10:88996295..88996335,-!p3@Nr1h4!0.45!2.33!Nr1h4;;chr10:79957600..79957618,+!p1@Onecut3!0.45!1.81!Onecut3;;chr10:42303385..42303401,-!p1@Nr2e1!0.45!1.81!Nr2e1;;chr11:96685444..96685473,-!p5@Nfe2l1!0.45!1.81!Nfe2l1;;chr2:181501822..181501834,+!p8@Myt1!0.45!1.81!Myt1;;chr2:172375136..172375149,+!p2@Tfap2c!0.45!1.81!Tfap2c;;chr2:172376528..172376543,+!p3@Tfap2c!0.45!1.81!Tfap2c;;chr2:26062055..26062100,-!p1@Lhx3!0.45!1.81!Lhx3;;chr9:55388997..55389016,+!p1@Isl2!0.45!1.81!Isl2;;chr3:89191265..89191276,-!p16@Zbtb7b!0.45!1.81!Zbtb7b;;chr5:106887496..106887515,-!p2@Barhl2!0.45!1.81!Barhl2;;chr3:89191234..89191245,-!p15@Zbtb7b!0.45!1.81!Zbtb7b;;chr4:107107224..107107259,+!p2@Glis1!0.45!1.81!Glis1;;chr12:86939997..86940040,+!p4@Jdp2!0.45!1.81!Jdp2;;chr7:17200307..17200370,-!p2@Grlf1!0.44!17.85!Grlf1;;chr18:83080231..83080254,+!p3@Zfp516!0.44!7.76!Zfp516;;chr11:5761979..5761992,+!p2@Aebp1!0.44!4.40!Aebp1;;chr13:99124189..99124205,+!p1@Foxd1!0.44!3.10!Foxd1;;chr11:101646155..101646170,-!p3@Etv4!0.44!2.33!Etv4;;chr10:67375223..67375240,-!p4@Zfp365!0.44!2.07!Zfp365;;chr3:34548946..34548972,+!p2@Sox2!0.44!2.07!Sox2;;chr4:150503457..150503498,-!p3@Camta1!0.44!2.07!Camta1;;chr6:52663725..52663794,+!p1@Tax1bp1!0.43!367.10!Tax1bp1;;chr5:76733756..76733815,-!p1@Clock!0.43!37.51!Clock;;chr11:100721761..100721851,+!p1@Stat5a!0.43!17.33!Stat5a;;chr6:53018556..53018650,-!p1@Jazf1!0.43!15.78!Jazf1;;chr7:6649134..6649167,-!p1@Zim1!0.43!12.68!Zim1;;chr19:28086084..28086124,-!p6@Rfx3!0.43!6.21!Rfx3;;chr9:48644037..48644067,-!p2@Zbtb16!0.43!5.43!Zbtb16;;chr13:67229127..67229153,+!p2@Zfp759!0.43!4.14!Zfp759;;chr4:13712168..13712218,+!p4@Runx1t1!0.43!3.36!Runx1t1;;chr8:87237732..87237745,-!p7@Nfix!0.43!3.10!Nfix;;chr5:134741947..134741948,-!p9@Gtf2i!0.43!3.10!Gtf2i;;chr5:107125549..107125605,-!p1@Zfp644!0.42!41.39!Zfp644;;chr4:133276801..133276891,-!p3@Arid1a!0.42!24.58!Arid1a;;chr6:47785649..47785724,+!p1@Zfp398!0.42!18.89!Zfp398;;chr7:50835064..50835134,+!p1@Zfp719!0.42!18.11!Zfp719;;chr18:11052642..11052659,+!p1@Gata6!0.42!11.38!Gata6;;chr12:75009172..75009223,+!p3@Hif1a!0.42!5.17!Hif1a;;chr4:154010409..154010466,-!p2@Prdm16!0.42!4.92!Prdm16;;chr13:31898496..31898519,+!p3@Foxc1!0.42!3.10!Foxc1;;chr9:69137648..69137656,+!p5@Rora!0.42!2.59!Rora;;chr8:79423144..79423178,+!p3@Nr3c2!0.42!2.59!Nr3c2;;chr7:6315994..6316007,+!p2@Zfp78!0.42!2.33!Zfp78;;chr12:37835203..37835218,+!p3@Meox2!0.42!2.07!Meox2;;chr3:95032213..95032226,-!p6@Mllt11!0.42!2.07!Mllt11;;chr4:97444471..97444514,+!p1@Nfia!0.41!62.35!Nfia;;chr5:25004566..25004590,-!p1@Mll3!0.41!53.55!Mll3;;chr12:119539843..119539899,-!p1@Sp4!0.41!11.90!Sp4;;chr19:26681865..26681900,+!p6@Smarca2!0.41!6.21!Smarca2;;chr10:80870405..80870428,-!p4@Nfic!0.41!5.69!Nfic;;chr16:42907656..42907675,+!p10@Zbtb20!0.41!4.40!Zbtb20;;chr12:25257141..25257173,+!p1@Grhl1!0.41!4.14!Grhl1;;chr4:133310137..133310152,-!p12@Arid1a!0.41!3.10!Arid1a;;chr4:13670626..13670657,+!p5@Runx1t1!0.41!2.85!Runx1t1;;chr1:165243591..165243625,-!p2@Prrx1!0.41!2.85!Prrx1;;chr17:44873258..44873281,-!p5@Runx2!0.41!2.33!Runx2;;chr8:87237692..87237703,-!p12@Nfix!0.41!2.33!Nfix;;chr19:5560600..5560617,-!p1@Ovol1!0.41!2.07!Ovol1;;chr6:52664406..52664434,+!p3@Tax1bp1!0.41!2.07!Tax1bp1;;chr6:144157968..144157989,-!p7@Sox5!0.41!1.55!Sox5;;chr9:96632719..96632745,-!p7@Zbtb38!0.41!1.55!Zbtb38;;chr7:53631837..53631850,+!p1@Myod1!0.41!1.55!Myod1;;chr8:94881639..94881650,+!p5@Irx5!0.41!1.55!Irx5;;chr9:31721051..31721068,-!p3@Barx2!0.41!1.55!Barx2;;chr2:172376261..172376267,+!p4@Tfap2c!0.41!1.55!Tfap2c;;chr2:162769220..162769252,+!p1@L3mbtl1!0.41!1.55!L3mbtl1;;chr2:26063801..26063813,-!p2@Lhx3!0.41!1.55!Lhx3;;chr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678684..13678704,+!p17@Runx1t1!0.25!0.78!Runx1t1;;chr4:148178459..148178482,+!p4@Casz1!0.25!0.78!Casz1;;chr3:8667049..8667056,-!p5@Hey1!0.25!0.78!Hey1;;chr2:77541309..77541322,-!p14@Zfp385b!0.25!0.78!Zfp385b;;chr4:153708869..153708872,-!p24@Prdm16!0.25!0.78!Prdm16;;chr4:150503544..150503561,-!p8@Camta1!0.25!0.78!Camta1;;chr4:82351639..82351658,-!p14@Nfib!0.25!0.78!Nfib;;chr4:107353376..107353452,-!p3@Dmrtb1!0.25!0.78!Dmrtb1;;chr7:144505876..144505884,-!p9@Ebf3!0.25!0.78!Ebf3;;chr5:35731612..35731623,+!p3@Hmx1!0.25!0.78!Hmx1;;chr13:40820555..40820584,-!p14@Tfap2a!0.25!0.78!Tfap2a;;chr13:40826236..40826248,-!p8@Tfap2a!0.25!0.78!Tfap2a;;chr15:37163065..37163092,+!p4@Grhl2!0.25!0.78!Grhl2;;chr12:75002357..75002378,+!p6@Hif1a!0.25!0.78!Hif1a;;chr14:122874718..122874729,+!p3@Zic2!0.25!0.78!Zic2;;chr14:52640344..52640350,-!p17@Zfp219!0.25!0.78!Zfp219;;chr14:17408052..17408073,-!p5@Rarb!0.25!0.78!Rarb;;chr13:44936106..44936121,+!p13@Jarid2!0.25!0.78!Jarid2;;chr14:98568502..98568516,-!p7@Dach1!0.25!0.78!Dach1;;chr12:37835219..37835230,+!p5@Meox2!0.25!0.78!Meox2;;chrX:55284180..55284195,+!p2@Zic3!0.25!0.78!Zic3;;chr9:91256933..91256954,+!p4@Zic4!0.25!0.78!Zic4;;chrX:108009761..108009788,+!p1@Pou3f4!0.25!0.78!Pou3f4;;chr9:91263879..91263911,+!p1@Zic4!0.25!0.78!Zic4;;chr8:87298020..87298041,-!p9@Nfix!0.25!0.78!Nfix;;chr9:63514609..63514620,-!p10@Smad3!0.25!0.78!Smad3;;chr9:59797525..59797538,-!p2@Nr2e3!0.25!0.78!Nr2e3;;chr9:59796270..59796294,-!p4@Nr2e3!0.25!0.78!Nr2e3;;chr8:87238155..87238187,-!p13@Nfix!0.25!0.78!Nfix;;chr9:59797503..59797513,-!p3@Nr2e3!0.25!0.78!Nr2e3;;chr8:94325779..94325791,-!p7@Irx3!0.25!0.78!Irx3;;chr7:53631818..53631829,+!p2@Myod1!0.25!0.78!Myod1;;chr11:98190955..98190968,-!p2@Neurod2!0.25!0.78!Neurod2;;chr11:121381087..121381108,-!p4@Zfp750!0.25!0.78!Zfp750;;chr10:5636354..5636373,-!p2@Esr1!0.25!0.78!Esr1;;chr11:100720767..100720797,+!p4@Stat5a!0.25!0.78!Stat5a;;chr11:90251960..90251972,-!p9@Hlf!0.25!0.78!Hlf;;chr11:100720806..100720820,+!p6@Stat5a!0.25!0.78!Stat5a;;chr11:116196714..116196729,-!p2@Foxj1!0.25!0.78!Foxj1;;chr10:42303410..42303422,-!p3@Nr2e1!0.25!0.78!Nr2e1;;chr1:136186574..136186592,+!p1@Myog!0.25!0.78!Myog;;chr1:169528457..169528482,+!p3@Rxrg!0.25!0.78!Rxrg;;chr2:65768174..65768247,+!p2@Csrnp3!0.25!0.78!Csrnp3;;chr1:135557400..135557421,-!p4@Zbed6!0.25!0.78!Zbed6;;chr2:105522885..105522902,+!p15@Pax6!0.25!0.78!Pax6;;chr1:173987720..173987729,-!p1@Nhlh1!0.25!0.78!Nhlh1;;chr1:6720186..6720198,+!p5@St18!0.25!0.78!St18;;chr1:140739042..140739054,-!p2@Lhx9!0.25!0.78!Lhx9;;chr1:19202185..19202187,+!p9@Tfap2b!0.25!0.78!Tfap2b;;chr2:105515772..105515780,+!p9@Pax6!0.25!0.78!Pax6;;chr2:105514700..105514715,+!p13@Pax6!0.25!0.78!Pax6;;chr15:80085920..80085941,+!p1@Atf4!0.24!181.61!Atf4;;chrX:148667771..148667803,+!p1@Kdm5c!0.24!87.44!Kdm5c;;chr6:35083688..35083730,-!p1@Cnot4!0.24!78.90!Cnot4;;chr4:149611320..149611348,+!p1@Eno1,p1@Gm5506,p1@LOC100045967,p1@LOC100503183!0.24!67.26!Eno1;;chr9:122775056..122775117,-!p1@Zfp445!0.24!53.03!Zfp445;;chr2:119722948..119723028,+!p1@Mga!0.24!45.27!Mga;;chr11:87881744..87881791,+!p1@Vezf1!0.24!43.98!Vezf1;;chr7:13420322..13420401,+!p1@Zfp110!0.24!30.79!Zfp110;;chr11:6375995..6376105,-!p1@Purb!0.24!27.68!Purb;;chr14:76814539..76814600,+!p2@Tsc22d1!0.24!21.99!Tsc22d1;;chr8:4613152..4613177,+!p1@Zfp958!0.24!17.33!Zfp958;;chr9:55785900..55785950,-!p1@Scaper!0.24!15.26!Scaper;;chr18:55152206..55152251,-!p1@Zfp608!0.24!14.75!Zfp608;;chr14:76904356..76904367,+!p3@Tsc22d1!0.24!10.87!Tsc22d1;;chr4:97444590..97444607,+!p6@Nfia!0.24!10.87!Nfia;;chr15:100382390..100382441,-!p1@Tfcp2!0.24!9.83!Tfcp2;;chr6:90412582..90412601,+!p1@Klf15!0.24!6.73!Klf15;;chr18:55147667..55147746,-!p2@Zfp608!0.24!6.47!Zfp608;;chr19:28085485..28085544,-!p5@Rfx3!0.24!5.43!Rfx3;;chr6:117813087..117813121,+!p1@Zfp239!0.24!5.17!Zfp239;;chr6:47785748..47785776,+!p3@Zfp398!0.24!5.17!Zfp398;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:777-19A2
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011423
+|is_a=EFO:0002091;;FF:0011423
+|is_obsolete=
+|library_id=CNhs11188
+|library_id_phase_based=2:CNhs11188
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;777
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;777
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/eyeball%252c%2520neonate%2520N16.CNhs11188.777-19A2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/eyeball%252c%2520neonate%2520N16.CNhs11188.777-19A2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/eyeball%252c%2520neonate%2520N16.CNhs11188.777-19A2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/eyeball%252c%2520neonate%2520N16.CNhs11188.777-19A2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/eyeball%252c%2520neonate%2520N16.CNhs11188.777-19A2.mm9.nobarcode.rdna.fa.gz
 |name=eyeball, neonate N16
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11188,LSID746,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.268195142254294,0.0246103221177863,0.015441128362435,0,0.181102009199648,0,0.631279592716332,0,0.057444161746059,0,0,-0.0843392403965415,0,0,0,0,0,0,0.256955690155078,0,0,0,0,0,0.0999233952154288,0,0,0,0,0,0,0,0.106392790210991,0,0,0,0,0.072826001231154,0.0992018811684331,0.0212837820094826,-0.168832191102102,0.713845112727581,0.502112839178996,0,0,0,0,0,0,0,0,0,0.710900076814477,0.0999233952154288,0,0.115096461636207,0,0,0,0,0.0393973086044324,0,0.0999233952154288,0.0999233952154288,0.181102009199648,0.107123576820257,0.201251774667475,0.176434944037021,0.994009838857694,0.242404537794703,0,0.171461286166902,0.0618551472169937,0.219107374533675,0,0,0.197575443059092,0.0354590317270418,0.0438846478621957,0.229693011824352,0.00735237917290455,0,0,0,0.0499616976077144,0,0.00529305329049867,0.114347855640614,0.132299670110304,0.0888643793056667,0,0.308524606664259,0,0.000264502265504702
 |rna_box=19
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=eyeball
 |top_motifs=CRX:9.18018866797;RORA:5.69795518841;MAFB:3.03904850998;PITX1..3:2.70896616486;TAL1_TCF{3,4,12}:2.68186917175;NFIL3:2.48020518961;NFE2L2:2.38235280187;CDC5L:2.28673516961;NANOG:2.15417250639;TGIF1:2.01685127507;SOX5:1.95380068466;TOPORS:1.69967666122;VSX1,2:1.69418680542;SPZ1:1.58468743444;POU6F1:1.56819143378;NKX2-1,4:1.56639092583;NHLH1,2:1.53169261713;ESRRA:1.49410220266;SMAD1..7,9:1.47325976765;MYFfamily:1.47088390995;FOXP1:1.42418070529;POU3F1..4:1.37820266706;NR5A1,2:1.35693112909;MYOD1:1.2932145873;GTF2A1,2:1.25771819414;ADNP_IRX_SIX_ZHX:1.25461138261;HOX{A5,B5}:1.22970488056;SOX{8,9,10}:1.19681998845;KLF4:1.19139279723;BPTF:1.14645378852;IKZF1:1.11900345265;PAX2:1.10750397053;REST:1.1025151424;TLX1..3_NFIC{dimer}:1.10146427149;HOX{A4,D4}:1.02174889593;GTF2I:1.01920798949;RXR{A,B,G}:0.99514020159;NFE2L1:0.992703521576;AHR_ARNT_ARNT2:0.989682322518;NKX6-1,2:0.966619798978;ZEB1:0.962832001636;PAX6:0.960431075769;CUX2:0.897570671314;ZBTB6:0.879963656171;NFIX:0.858539147049;NKX2-3_NKX2-5:0.856325970967;PRDM1:0.851209620354;MTE{core}:0.834239306667;PAX5:0.827969447132;TFAP2{A,C}:0.824441315719;TFCP2:0.823647976035;PPARG:0.812997730325;GFI1:0.812437987131;SREBF1,2:0.80020089262;MED-1{core}:0.789481721988;MYBL2:0.760138676648;PATZ1:0.757140243629;DBP:0.739539728388;MEF2{A,B,C,D}:0.732418228768;MZF1:0.732122802807;GCM1,2:0.728229569888;ZFP161:0.723091209557;MAZ:0.720274869631;BREu{core}:0.707812113947;ATF2:0.700851462332;HIC1:0.698954822636;PRRX1,2:0.688680046015;GFI1B:0.659885270343;NFE2:0.657147352076;FOX{I1,J2}:0.654698823126;GATA4:0.649858602103;HIF1A:0.628312758417;EVI1:0.615463540196;NKX3-2:0.609814344528;NKX2-2,8:0.598632470746;NR3C1:0.591171563021;TFAP2B:0.565515961075;ZIC1..3:0.558402216839;HAND1,2:0.550293415347;RFX2..5_RFXANK_RFXAP:0.546045744236;ARID5B:0.539038177624;SNAI1..3:0.522490096411;NFATC1..3:0.481847515366;EGR1..3:0.473771331869;SP1:0.465222149693;PAX1,9:0.416933457504;PAX8:0.412654289935;ZNF384:0.39785060452;LMO2:0.39620726008;FOXA2:0.389607107155;SOX2:0.375092793081;TFAP4:0.372917661796;HSF1,2:0.340986436886;PAX4:0.296978091511;RFX1:0.270172107565;FOXD3:0.267498488166;ZBTB16:0.25552780982;FOSL2:0.247414088387;bHLH_family:0.238603770364;TEAD1:0.233446906025;XCPE1{core}:0.204869887932;POU1F1:0.198267869404;HBP1_HMGB_SSRP1_UBTF:0.190369556818;RREB1:0.181491827917;ESR1:0.163439202959;FOXP3:0.160515675899;UFEwm:0.146903413288;ATF6:0.110931920541;FOXL1:0.109291517792;TBP:0.100853586268;AIRE:0.0135382013981;FOXN1:0.0100063334876;RBPJ:-0.00955033541005;ATF5_CREB3:-0.0198029882806;FOX{F1,F2,J1}:-0.0456940086518;MTF1:-0.0477519939446;RXRA_VDR{dimer}:-0.0520557154253;PBX1:-0.0640967263361;STAT5{A,B}:-0.102830660099;ZNF143:-0.104340142505;CREB1:-0.120750506385;YY1:-0.129074607622;HMX1:-0.156255438726;GZF1:-0.156324764419;ZNF238:-0.159222416183;STAT2,4,6:-0.162023920551;LHX3,4:-0.187520639007;TP53:-0.223560187973;HES1:-0.228623360178;JUN:-0.230239325852;SRF:-0.231375761609;NRF1:-0.264647628719;POU5F1:-0.284551891557;HMGA1,2:-0.307437379649;FOXO1,3,4:-0.311391021927;GLI1..3:-0.317551214496;IRF7:-0.344665752854;GATA6:-0.36114529104;FOS_FOS{B,L1}_JUN{B,D}:-0.376423579494;AR:-0.37808876502;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.395252306679;NKX3-1:-0.410187057124;POU2F1..3:-0.424756252918;NANOG{mouse}:-0.461321103685;ATF4:-0.483566654815;STAT1,3:-0.48542878383;TBX4,5:-0.485682069092;IKZF2:-0.491329062095;IRF1,2:-0.495055093067;EP300:-0.501990503729;ALX1:-0.506515458712;FOXM1:-0.523346086079;T:-0.54878492403;TLX2:-0.571023825196;EN1,2:-0.584903151016;HNF4A_NR2F1,2:-0.585038673838;FOX{D1,D2}:-0.587297829348;LEF1_TCF7_TCF7L1,2:-0.589079199731;NR6A1:-0.594387869065;ZNF148:-0.596601033338;SOX17:-0.629768029776;TEF:-0.659349420232;FOXQ1:-0.730877053432;TFDP1:-0.753240640056;BACH2:-0.773231615587;HOXA9_MEIS1:-0.824594731585;MYB:-0.833829429714;OCT4_SOX2{dimer}:-0.900814688111;HLF:-0.925268238562;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.927350972934;NR1H4:-0.937652001161;CEBPA,B_DDIT3:-0.94675299514;EBF1:-0.951193200068;ONECUT1,2:-0.979325351502;HNF1A:-0.999318579408;ZNF423:-1.04723424105;NFKB1_REL_RELA:-1.07269675136;NFY{A,B,C}:-1.07576816222;SPI1:-1.105312155;ETS1,2:-1.17958488561;DMAP1_NCOR{1,2}_SMARC:-1.20811059576;ELK1,4_GABP{A,B1}:-1.22305984441;PDX1:-1.23931454598;ALX4:-1.24996869984;SPIB:-1.36364137684;RUNX1..3:-1.40074897462;E2F1..5:-1.48187721517;ELF1,2,4:-1.69069076893;CDX1,2,4:-2.43429646322
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:777-19A2;search_select_hide=table117:777-19A2
 }}

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FF:777-19A2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:20, 4 June 2020

CNhs11188

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0